Rmu_ssc0000388.1_g000064

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000388.1
OG0031022
Physical Location & Seq
Forward (+)
308541 .. 308882
342 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 342 bp
atgagtaacctgaacagactggatttcgctccattaggaacaactggctctagatgtcacaagtgggttcgtgatgtcagccaacatctcgaggccgatggaatcctggatatgattctcgagtctagccaggacgtgctaactgttgagcaagctcaaggtttggaagcaaatagagcagccttagaggcaaataaggcagaagccatcatcctaatgactcgtcatacggatgattcaccccagtacgagtatatgaataaagaagaccacagaaagctgtgggtctcactcaaagaaagatttgggaacgtctgtgactccctgcttcttgaactataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

113

Amino Acids

12.86

Weight (kDa)

4.96

Isoelectric Point (pI)

52.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031022)

Species Orthologous Gene IDs
rosa_multiflora Rmu_ssc0000388.1_g000064
rosa_samantha Rh6AG153000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 248
AgsI TTSAA 1 cut(s) 335
AjiI CACGTC 1 cut(s) 136
AjnI CCWGG 2 cut(s) 105, 129
AluBI AGCT 2 cut(s) 155, 280
AluI AGCT 2 cut(s) 155, 280
Alw26I GTCTC 1 cut(s) 292
Ama87I CYCGRG 2 cut(s) 89, 119
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 179
AsuHPI GGTGA 1 cut(s) 231
AvaI CYCGRG 2 cut(s) 89, 119
BbsI GAAGAC 1 cut(s) 273
BbvI GCAGC 1 cut(s) 191
BccI CCATC 2 cut(s) 92, 215
BciT130I CCWGG 2 cut(s) 107, 131
BcoDI GTCTC 1 cut(s) 292
BfaI CTAG 2 cut(s) 51, 126
BglI GCCNNNNNGGC 1 cut(s) 188
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
Bme1390I CCNGG 2 cut(s) 107, 131
BmeT110I CYCGRG 2 cut(s) 89, 119
BmgBI CACGTC 1 cut(s) 136
BmrFI CCNGG 2 cut(s) 107, 131
BmrI ACTGGG 1 cut(s) 238
BmuI ACTGGG 1 cut(s) 238
BpiI GAAGAC 1 cut(s) 273
BpuEI CTTGAG 1 cut(s) 141
BsaI GGTCTC 1 cut(s) 292
Bse1I ACTGG 3 cut(s) 24, 49, 244
BseBI CCWGG 2 cut(s) 107, 131
BseGI GGATG 2 cut(s) 210, 238
BseNI ACTGG 3 cut(s) 24, 49, 244
BseXI GCAGC 1 cut(s) 191
BshFI GGCC 1 cut(s) 95
BsiHKCI CYCGRG 2 cut(s) 89, 119
BsmAI GTCTC 1 cut(s) 292
BsnI GGCC 1 cut(s) 95
Bso31I GGTCTC 1 cut(s) 292
BsoBI CYCGRG 2 cut(s) 89, 119
BspANI GGCC 1 cut(s) 95
BspTNI GGTCTC 1 cut(s) 292
BsrI ACTGG 3 cut(s) 24, 49, 244
Bst2UI CCWGG 2 cut(s) 107, 131
Bst4CI ACNGT 1 cut(s) 145
BstC8I GCNNGC 1 cut(s) 153
BstDEI CTNAG 1 cut(s) 184
BstF5I GGATG 2 cut(s) 210, 238
BstMAI GTCTC 1 cut(s) 292
BstMWI GCNNNNNNNGC 3 cut(s) 176, 188, 197
BstNI CCWGG 2 cut(s) 107, 131
BstSCI CCNGG 2 cut(s) 105, 129
BstV1I GCAGC 1 cut(s) 191
BstV2I GAAGAC 1 cut(s) 273
BsuRI GGCC 1 cut(s) 95
BtrI CACGTC 1 cut(s) 136
BtsCI GGATG 2 cut(s) 210, 238
Cac8I GCNNGC 1 cut(s) 153
Csp6I GTAC 1 cut(s) 247
CviJI RGCY 8 cut(s) 48, 81, 95, 129, 155, 182, 206, 280
CviKI_1 RGCY 8 cut(s) 48, 81, 95, 129, 155, 182, 206, 280
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 1 cut(s) 184
Eco31I GGTCTC 1 cut(s) 292
Eco88I CYCGRG 2 cut(s) 89, 119
EcoRII CCWGG 2 cut(s) 105, 129
FaiI YATR 5 cut(s) 113, 228, 255, 257, 340
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 2 cut(s) 197, 245
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 2 cut(s) 51, 126
GluI GCNGC 1 cut(s) 180
HaeIII GGCC 1 cut(s) 95
HinfI GANTC 6 cut(s) 102, 115, 122, 220, 236, 320
HphI GGTGA 1 cut(s) 231
Hpy188III TCNNGA 5 cut(s) 51, 71, 89, 119, 332
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 2 cut(s) 135, 312
HpyF10VI GCNNNNNNNGC 3 cut(s) 176, 188, 197
HpyF3I CTNAG 1 cut(s) 184
HpySE526I ACGT 2 cut(s) 135, 312
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 9 cut(s) 5, 23, 30, 92, 116, 119, 143, 257, 338
Lsp1109I GCAGC 1 cut(s) 191
MaeI CTAG 2 cut(s) 51, 126
MaeII ACGT 2 cut(s) 135, 312
MaeIII GTNAC 3 cut(s) 5, 56, 317
MboII GAAGA 1 cut(s) 278
MlyI GAGTC 3 cut(s) 131, 214, 314
MnlI CCTC 2 cut(s) 85, 181
MslI CAYNNNNRTG 2 cut(s) 215, 231
MspR9I CCNGG 2 cut(s) 107, 131
MvaI CCWGG 2 cut(s) 107, 131
MwoI GCNNNNNNNGC 3 cut(s) 176, 188, 197
NmuCI GTSAC 2 cut(s) 56, 317
PaeR7I CTCGAG 2 cut(s) 89, 119
PfeI GAWTC 3 cut(s) 102, 115, 236
PfoI TCCNGGA 1 cut(s) 105
PkrI GCNGC 1 cut(s) 181
PleI GAGTC 3 cut(s) 130, 214, 314
PpsI GAGTC 3 cut(s) 130, 214, 314
Psp6I CCWGG 2 cut(s) 105, 129
PspGI CCWGG 2 cut(s) 105, 129
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
RseI CAYNNNNRTG 2 cut(s) 215, 231
SatI GCNGC 1 cut(s) 180
SchI GAGTC 3 cut(s) 131, 214, 314
ScrFI CCNGG 2 cut(s) 107, 131
SetI ASST 6 cut(s) 12, 138, 157, 163, 282, 315
Sfr274I CTCGAG 2 cut(s) 89, 119
SlaI CTCGAG 2 cut(s) 89, 119
SmiMI CAYNNNNRTG 2 cut(s) 215, 231
SmlI CTYRAG 3 cut(s) 89, 119, 156
SmoI CTYRAG 3 cut(s) 89, 119, 156
SspMI CTAG 2 cut(s) 51, 126
StyD4I CCNGG 2 cut(s) 105, 129
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 2 cut(s) 138, 315
TaqI TCGA 2 cut(s) 90, 120
TfiI GAWTC 3 cut(s) 102, 115, 236
TseFI GTSAC 2 cut(s) 56, 317
TseI GCWGC 1 cut(s) 179
Tsp45I GTSAC 2 cut(s) 56, 317
TspDTI ATGAA 1 cut(s) 272
TspGWI ACGGA 1 cut(s) 245
XbaI TCTAGA 1 cut(s) 50
XhoI CTCGAG 2 cut(s) 89, 119
XspI CTAG 2 cut(s) 51, 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.