Rmu_ssc0000432.1_g000118

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000432.1
OG0025466
Physical Location & Seq
Forward (+)
400040 .. 400676
637 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 396 bp
atgtgtcgtagcaaaagcacccttgccaaaggaacctgtggggttatcttggggttttcttgccatgatcttcttagcagggctgatgctgctgataattctagcactgaaacagactcagaaaagatgtcagaaaggaacttgcttggtgacataggtgtttggctccaatgccagttggcatgcaaactgtctcttttgagcgtgtgcgcaggcgtgccagcaccgtggggtgcagtcgtcgggggaggcgttacccttgctttgttggtagtatctgtggcagtagcactgacaatcggctcggggagactaggactgaaagaacggtcgccgggtttcaacaaggttgaaggtttgctccggggaggctttgtaatcgatgggattgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3730

Protein Analysis

131

Amino Acids

13.45

Weight (kDa)

6.55

Isoelectric Point (pI)

49.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025466)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0012667.1_g000002 Rmu_sc0021463.1_g000001 Rmu_ssc0000432.1_g000118

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 211
AgsI TTSAA 2 cut(s) 343, 353
Alw26I GTCTC 2 cut(s) 198, 304
Ama87I CYCGRG 1 cut(s) 304
ApeKI GCWGC 1 cut(s) 89
AspLEI GCGC 1 cut(s) 212
AsuC2I CCSGG 2 cut(s) 336, 365
AsuHPI GGTGA 1 cut(s) 161
AvaI CYCGRG 1 cut(s) 304
BbvI GCAGC 1 cut(s) 76
BccI CCATC 1 cut(s) 377
BcnI CCSGG 2 cut(s) 336, 365
BcoDI GTCTC 2 cut(s) 198, 304
BfaI CTAG 2 cut(s) 102, 314
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
Bme1390I CCNGG 2 cut(s) 336, 365
BmeT110I CYCGRG 1 cut(s) 304
BmiI GGNNCC 2 cut(s) 34, 167
BmrFI CCNGG 2 cut(s) 336, 365
BmsI GCATC 1 cut(s) 76
BpuMI CCSGG 2 cut(s) 336, 365
Bsa29I ATCGAT 1 cut(s) 381
BsaJI CCNNGG 2 cut(s) 227, 364
BsaXI ACNNNNNCTCC 2 cut(s) 360, 390
Bse1I ACTGG 1 cut(s) 175
BseCI ATCGAT 1 cut(s) 381
BseDI CCNNGG 2 cut(s) 227, 364
BseMII CTCAG 1 cut(s) 132
BseNI ACTGG 1 cut(s) 175
BseXI GCAGC 1 cut(s) 76
BsgI GTGCAG 1 cut(s) 255
Bsh1285I CGRYCG 1 cut(s) 332
BshVI ATCGAT 1 cut(s) 381
BsiEI CGRYCG 1 cut(s) 332
BsiHKCI CYCGRG 1 cut(s) 304
BsiSI CCGG 2 cut(s) 335, 364
BsmAI GTCTC 2 cut(s) 198, 304
BsoBI CYCGRG 1 cut(s) 304
Bsp143I GATC 1 cut(s) 67
BspCNI CTCAG 1 cut(s) 131
BspDI ATCGAT 1 cut(s) 381
BspLI GGNNCC 2 cut(s) 34, 167
BsrI ACTGG 1 cut(s) 175
BssECI CCNNGG 2 cut(s) 227, 364
BssMI GATC 1 cut(s) 67
Bst4CI ACNGT 3 cut(s) 192, 228, 330
BstC8I GCNNGC 4 cut(s) 184, 214, 218, 222
BstDEI CTNAG 2 cut(s) 74, 118
BstDSI CCRYGG 1 cut(s) 227
BstHHI GCGC 1 cut(s) 212
BstKTI GATC 1 cut(s) 70
BstMAI GTCTC 2 cut(s) 198, 304
BstMBI GATC 1 cut(s) 67
BstMCI CGRYCG 1 cut(s) 332
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstNSI RCATGY 1 cut(s) 186
BstSCI CCNGG 2 cut(s) 334, 363
BstV1I GCAGC 1 cut(s) 76
BstXI CCANNNNNNTGG 1 cut(s) 228
Bsu15I ATCGAT 1 cut(s) 381
BsuTUI ATCGAT 1 cut(s) 381
BtgI CCRYGG 1 cut(s) 227
BtsIMutI CAGTG 2 cut(s) 105, 290
Cac8I GCNNGC 4 cut(s) 184, 214, 218, 222
CfoI GCGC 1 cut(s) 212
ClaI ATCGAT 1 cut(s) 381
CviAII CATG 2 cut(s) 65, 183
CviJI RGCY 4 cut(s) 83, 166, 303, 372
CviKI_1 RGCY 4 cut(s) 83, 166, 303, 372
DdeI CTNAG 2 cut(s) 74, 118
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
Eco88I CYCGRG 1 cut(s) 304
FaeI CATG 2 cut(s) 68, 186
FaiI YATR 3 cut(s) 66, 155, 184
FatI CATG 2 cut(s) 64, 182
Fnu4HI GCNGC 1 cut(s) 90
Fsp4HI GCNGC 1 cut(s) 90
FspBI CTAG 2 cut(s) 102, 314
FspI TGCGCA 1 cut(s) 211
GlaI GCGC 1 cut(s) 211
GluI GCNGC 1 cut(s) 90
HapII CCGG 2 cut(s) 335, 364
HhaI GCGC 1 cut(s) 212
Hin1II CATG 2 cut(s) 68, 186
Hin6I GCGC 1 cut(s) 210
HinP1I GCGC 1 cut(s) 210
HinfI GANTC 1 cut(s) 116
HpaII CCGG 2 cut(s) 335, 364
HphI GGTGA 1 cut(s) 161
Hpy188I TCNGA 2 cut(s) 121, 133
Hpy99I CGWCG 1 cut(s) 245
HpyAV CCTTC 1 cut(s) 347
HpyCH4III ACNGT 3 cut(s) 192, 228, 330
HpyCH4V TGCA 2 cut(s) 186, 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 2 cut(s) 74, 118
Hsp92II CATG 2 cut(s) 68, 186
HspAI GCGC 1 cut(s) 210
Kzo9I GATC 1 cut(s) 67
LmnI GCTCC 2 cut(s) 171, 366
LpnPI CCDG 7 cut(s) 49, 64, 188, 198, 234, 348, 377
Lsp1109I GCAGC 1 cut(s) 76
LweI GCATC 1 cut(s) 76
MaeI CTAG 2 cut(s) 102, 314
MaeIII GTNAC 2 cut(s) 149, 253
MalI GATC 1 cut(s) 69
MboI GATC 1 cut(s) 67
MboII GAAGA 1 cut(s) 62
MluCI AATT 1 cut(s) 97
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 2 cut(s) 242, 362
MspI CCGG 2 cut(s) 335, 364
MspR9I CCNGG 2 cut(s) 336, 365
MwoI GCNNNNNNNGC 1 cut(s) 89
NciI CCSGG 2 cut(s) 336, 365
NdeII GATC 1 cut(s) 67
NlaIII CATG 2 cut(s) 68, 186
NlaIV GGNNCC 2 cut(s) 34, 167
NmuCI GTSAC 1 cut(s) 149
NsbI TGCGCA 1 cut(s) 211
NspI RCATGY 1 cut(s) 186
PaeI GCATGC 1 cut(s) 186
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PkrI GCNGC 1 cut(s) 91
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
PspN4I GGNNCC 2 cut(s) 34, 167
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 1 cut(s) 67
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 2 cut(s) 336, 365
SetI ASST 4 cut(s) 38, 160, 351, 358
SfaNI GCATC 1 cut(s) 76
SphI GCATGC 1 cut(s) 186
Sse9I AATT 1 cut(s) 97
SspMI CTAG 2 cut(s) 102, 314
StyD4I CCNGG 2 cut(s) 334, 363
TaaI ACNGT 3 cut(s) 192, 228, 330
TaqI TCGA 1 cut(s) 381
TasI AATT 1 cut(s) 97
TscAI CASTG 2 cut(s) 112, 297
TseFI GTSAC 1 cut(s) 149
TseI GCWGC 1 cut(s) 89
Tsp45I GTSAC 1 cut(s) 149
TspRI CASTG 2 cut(s) 112, 297
XceI RCATGY 1 cut(s) 186
XspI CTAG 2 cut(s) 102, 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.