Rmu_ssc0000489.1_g000003

N-acetyl-D-glucosamine kinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000489.1
OG0031027
Physical Location & Seq
Reverse (-)
9289 .. 10662
1374 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000489.1_g000003.1.cds

Sequence Viewer

Length: 408 bp
atgcattctggattgcacaatactatcaaaggggattggtatccatcttgggctcgcattgccgcacttgttccagaggttgtatcttgtgcagaggctggtgatgaagtcgcaaataagatcttgtttgattcagttgaggagttggggttaagtgtgaaagctgttgttcagagacttgacttgtgtggcccagatggaaaagattcttttccccttgtcatggttggtggtgttcttgaggcaaataagaggtgggatataggaaaggaagtgattagatgcatctccaaggactacccaggggcagttccaattagacctgaggtggagcctgcagttggggcagcattgttagcatggaactgtttgatgaaagaatctgttaaagaagccttcaagtgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BcrAD_BadFG

Protein Analysis

135

Amino Acids

14.64

Weight (kDa)

5.18

Isoelectric Point (pI)

45.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031027)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8012394.1_g000001 Rmu_ssc0000489.1_g000003

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 63
AfiI CCNNNNNNNGG 2 cut(s) 223, 341
AgsI TTSAA 1 cut(s) 400
AjnI CCWGG 1 cut(s) 301
AluBI AGCT 1 cut(s) 164
AluI AGCT 1 cut(s) 164
Alw26I GTCTC 1 cut(s) 169
AlwNI CAGNNNCTG 1 cut(s) 98
AoxI GGCC 1 cut(s) 190
ApeKI GCWGC 1 cut(s) 347
Asp700I GAANNNNTTC 1 cut(s) 205
AspS9I GGNCC 1 cut(s) 191
AsuHPI GGTGA 1 cut(s) 113
AxyI CCTNAGG 1 cut(s) 324
BanII GRGCYC 1 cut(s) 55
BbvI GCAGC 1 cut(s) 359
BccI CCATC 2 cut(s) 52, 191
BciT130I CCWGG 1 cut(s) 303
BciVI GTATCC 1 cut(s) 51
BcoDI GTCTC 1 cut(s) 169
BfmI CTRYAG 1 cut(s) 336
BfuI GTATCC 1 cut(s) 51
BglII AGATCT 1 cut(s) 120
BisI GCNGC 2 cut(s) 63, 348
BlsI GCNGC 2 cut(s) 64, 349
Bme1390I CCNGG 1 cut(s) 303
BmgT120I GGNCC 1 cut(s) 191
BmiI GGNNCC 1 cut(s) 333
BmrFI CCNGG 1 cut(s) 303
BmsI GCATC 2 cut(s) 272, 294
BpuEI CTTGAG 1 cut(s) 260
BsaBI GATNNNNATC 1 cut(s) 39
BsaJI CCNNGG 3 cut(s) 291, 301, 302
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 2 cut(s) 223, 341
Bse21I CCTNAGG 1 cut(s) 324
Bse3DI GCAATG 1 cut(s) 57
Bse8I GATNNNNATC 1 cut(s) 39
BseBI CCWGG 1 cut(s) 303
BseDI CCNNGG 3 cut(s) 291, 301, 302
BseJI GATNNNNATC 1 cut(s) 39
BseLI CCNNNNNNNGG 2 cut(s) 223, 341
BseMI GCAATG 1 cut(s) 57
BseMII CTCAG 1 cut(s) 315
BseRI GAGGAG 1 cut(s) 155
BseXI GCAGC 1 cut(s) 359
BsgI GTGCAG 1 cut(s) 111
BshFI GGCC 1 cut(s) 192
BslI CCNNNNNNNGG 2 cut(s) 223, 341
BsmAI GTCTC 1 cut(s) 169
BsmI GAATGC 1 cut(s) 4
BsnI GGCC 1 cut(s) 192
Bsp1286I GDGCHC 1 cut(s) 55
Bsp143I GATC 1 cut(s) 120
BspACI CCGC 1 cut(s) 63
BspANI GGCC 1 cut(s) 192
BspCNI CTCAG 1 cut(s) 316
BspLI GGNNCC 1 cut(s) 333
BspMAI CTGCAG 1 cut(s) 340
BsrDI GCAATG 1 cut(s) 57
BssECI CCNNGG 3 cut(s) 291, 301, 302
BssMI GATC 1 cut(s) 120
BssT1I CCWWGG 1 cut(s) 291
Bst2UI CCWGG 1 cut(s) 303
Bst4CI ACNGT 1 cut(s) 368
BstC8I GCNNGC 2 cut(s) 55, 336
BstDEI CTNAG 1 cut(s) 324
BstKTI GATC 1 cut(s) 123
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 1 cut(s) 120
BstMWI GCNNNNNNNGC 3 cut(s) 59, 344, 356
BstNI CCWGG 1 cut(s) 303
BstSCI CCNGG 1 cut(s) 301
BstSFI CTRYAG 1 cut(s) 336
BstV1I GCAGC 1 cut(s) 359
BstX2I RGATCY 1 cut(s) 120
BstYI RGATCY 1 cut(s) 120
Bsu36I CCTNAGG 1 cut(s) 324
BsuI GTATCC 1 cut(s) 51
BsuRI GGCC 1 cut(s) 192
Cac8I GCNNGC 2 cut(s) 55, 336
CaiI CAGNNNCTG 1 cut(s) 98
Cfr13I GGNCC 1 cut(s) 191
CviAII CATG 2 cut(s) 223, 360
CviJI RGCY 6 cut(s) 53, 98, 164, 192, 334, 395
CviKI_1 RGCY 6 cut(s) 53, 98, 164, 192, 334, 395
DdeI CTNAG 1 cut(s) 324
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 291
Eco24I GRGCYC 1 cut(s) 55
Eco81I CCTNAGG 1 cut(s) 324
EcoRII CCWGG 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 291
EcoT22I ATGCAT 2 cut(s) 6, 287
EcoT38I GRGCYC 1 cut(s) 55
ErhI CCWWGG 1 cut(s) 291
FaeI CATG 2 cut(s) 226, 363
FaiI YATR 3 cut(s) 224, 263, 361
FatI CATG 2 cut(s) 222, 359
Fnu4HI GCNGC 2 cut(s) 63, 348
FriOI GRGCYC 1 cut(s) 55
Fsp4HI GCNGC 2 cut(s) 63, 348
GluI GCNGC 2 cut(s) 63, 348
HaeIII GGCC 1 cut(s) 192
Hin1II CATG 2 cut(s) 226, 363
HinfI GANTC 3 cut(s) 131, 206, 380
HphI GGTGA 1 cut(s) 113
Hpy188I TCNGA 1 cut(s) 174
Hpy188III TCNNGA 3 cut(s) 9, 74, 239
HpyAV CCTTC 1 cut(s) 406
HpyCH4III ACNGT 1 cut(s) 368
HpyCH4V TGCA 5 cut(s) 4, 16, 92, 285, 338
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 344, 356
HpyF3I CTNAG 1 cut(s) 324
Hsp92II CATG 2 cut(s) 226, 363
Kzo9I GATC 1 cut(s) 120
LmnI GCTCC 1 cut(s) 331
LpnPI CCDG 7 cut(s) 84, 87, 207, 288, 315, 336, 348
Lsp1109I GCAGC 1 cut(s) 359
LweI GCATC 2 cut(s) 272, 294
MalI GATC 1 cut(s) 122
MboI GATC 1 cut(s) 120
MflI RGATCY 1 cut(s) 120
MhlI GDGCHC 1 cut(s) 55
MluCI AATT 1 cut(s) 315
MnlI CCTC 6 cut(s) 70, 88, 133, 235, 246, 319
Mph1103I ATGCAT 2 cut(s) 6, 287
MroXI GAANNNNTTC 1 cut(s) 205
MseI TTAA 2 cut(s) 152, 387
MspR9I CCNGG 1 cut(s) 303
Mva1269I GAATGC 1 cut(s) 4
MvaI CCWGG 1 cut(s) 303
MwoI GCNNNNNNNGC 3 cut(s) 59, 344, 356
NdeII GATC 1 cut(s) 120
NlaIII CATG 2 cut(s) 226, 363
NlaIV GGNNCC 1 cut(s) 333
NsiI ATGCAT 2 cut(s) 6, 287
PasI CCCWGGG 1 cut(s) 302
PctI GAATGC 1 cut(s) 4
PdmI GAANNNNTTC 1 cut(s) 205
PfeI GAWTC 3 cut(s) 131, 206, 380
PkrI GCNGC 2 cut(s) 64, 349
Psp6I CCWGG 1 cut(s) 301
PspGI CCWGG 1 cut(s) 301
PspN4I GGNNCC 1 cut(s) 333
PspPI GGNCC 1 cut(s) 191
PstI CTGCAG 1 cut(s) 340
PstNI CAGNNNCTG 1 cut(s) 98
PsuI RGATCY 1 cut(s) 120
SaqAI TTAA 2 cut(s) 152, 387
SatI GCNGC 2 cut(s) 63, 348
Sau3AI GATC 1 cut(s) 120
Sau96I GGNCC 1 cut(s) 191
ScrFI CCNGG 1 cut(s) 303
SduI GDGCHC 1 cut(s) 55
SetI ASST 5 cut(s) 81, 166, 257, 325, 330
SfaNI GCATC 2 cut(s) 272, 294
SfcI CTRYAG 1 cut(s) 336
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 1 cut(s) 315
SsiI CCGC 1 cut(s) 63
StyD4I CCNGG 1 cut(s) 301
StyI CCWWGG 1 cut(s) 291
TaaI ACNGT 1 cut(s) 368
TasI AATT 1 cut(s) 315
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 3 cut(s) 131, 206, 380
Tru1I TTAA 2 cut(s) 152, 387
Tru9I TTAA 2 cut(s) 152, 387
TseI GCWGC 1 cut(s) 347
TspDTI ATGAA 2 cut(s) 120, 389
XmnI GAANNNNTTC 1 cut(s) 205
Zsp2I ATGCAT 2 cut(s) 6, 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.