Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000152

Orthogroup ID

OG0031822

Physical Location & Seq

Genomic Coordinates Forward (+)

123698 .. 125198

Gene Structure 1501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_152G00434630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGACTGATCAGGTTCAACCCAACGTGTATCTCATTGCTTGGGCTGTTTGTGAAACCACCATGTGCTTTAGTCACAAGCCTTGCCGACCTCCTTGGATCACTACAACCGCACTGTGTCTACCTCAAGATTTTGCAAGGGAATTGGGTCCAATACTTTGGACTGGGACGATAAGTCGACCCCACAATGGGCTATATATCAAGGGCCTGGTTTTGGTAAAGGGTTATGCCAACCTACAGGGCAAATGCATTCGTTGGCCCAAAGATCAGAAAATAAATCCAGAACGTGTAGCATTGGAGTATTTTTCAGAGGTGATTGGCCGGAGTAAGATTCAAGTAGTTAAAAGGAAGTCTAAAGAAATGTTCAAGACATGTTGCGTGCCTGCTGCTATGCAAGATCTCCTGTTTGAAGACAAAGCCAAACACCCATTCTCTTACGCAACTACAGCATCCGAATGGCAACTTTTCTTTCAGTTTGATGATAATGGTACTGGTGCCAGCTTCCTTCTCATTCATGGTCTCAACACAAGCTTGCCAAATGTTTTGTTGAAAGAAAGCATTCTAGTTTTTGGGAATAGAGAAGGATCTGAAGGAAATAACCAAGAAGAGAATGTGAATTTCTTGGCAGAGGCATTGTGGCTGGTGCCTTCTTGCAGCTACTTGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009506 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0030054 GO:0033554 GO:0034050 GO:0036094 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

221

Amino Acids

25.03

Weight (kDa)

7.55

Isoelectric Point (pI)

34.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031822)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_152G00434630 Rroxscaffold_2G00100610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	491, 640
AccI	GTMKAC	2 cut(s)	118, 175
AciI	CCGC	1 cut(s)	108
AclWI	GGATC	2 cut(s)	104, 589
AcoI	YGGCCR	1 cut(s)	316
AcsI	RAATTY	1 cut(s)	613
AcuI	CTGAAG	1 cut(s)	606
AdeI	CACNNNGTG	1 cut(s)	63
AfaI	GTAC	1 cut(s)	487
AfiI	CCNNNNNNNGG	3 cut(s)	185, 186, 211
AflIII	ACRYGT	3 cut(s)	24, 283, 368
AgsI	TTSAA	5 cut(s)	17, 332, 364, 407, 547
AhdI	GACNNNNNGTC	1 cut(s)	171
AjnI	CCWGG	1 cut(s)	204
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AluBI	AGCT	3 cut(s)	498, 528, 654
AluI	AGCT	3 cut(s)	498, 528, 654
Alw26I	GTCTC	1 cut(s)	521
AlwI	GGATC	2 cut(s)	104, 589
AoxI	GGCC	3 cut(s)	202, 254, 316
ApeKI	GCWGC	2 cut(s)	383, 651
ApoI	RAATTY	1 cut(s)	613
Asp700I	GAANNNNTTC	1 cut(s)	555
AspS9I	GGNCC	3 cut(s)	146, 202, 255
AsuHPI	GGTGA	1 cut(s)	322
AvaII	GGWCC	1 cut(s)	146
BanI	GGYRCC	2 cut(s)	491, 640
BbsI	GAAGAC	1 cut(s)	414
BbvI	GCAGC	1 cut(s)	370
BciT130I	CCWGG	1 cut(s)	206
BclI	TGATCA	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	521
BfaI	CTAG	2 cut(s)	560, 664
BfmI	CTRYAG	2 cut(s)	233, 441
BglII	AGATCT	1 cut(s)	394
BisI	GCNGC	2 cut(s)	384, 652
BlsI	GCNGC	2 cut(s)	385, 653
Bme1390I	CCNGG	1 cut(s)	206
Bme18I	GGWCC	1 cut(s)	146
BmeRI	GACNNNNNGTC	1 cut(s)	171
BmgT120I	GGNCC	3 cut(s)	146, 202, 255
BmiI	GGNNCC	3 cut(s)	147, 493, 642
BmrFI	CCNGG	1 cut(s)	206
BmrI	ACTGGG	1 cut(s)	171
BmsI	GCATC	1 cut(s)	455
BmuI	ACTGGG	1 cut(s)	171
BpiI	GAAGAC	1 cut(s)	414
BpuEI	CTTGAG	1 cut(s)	108
BsaI	GGTCTC	1 cut(s)	521
BsaJI	CCNNGG	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	3 cut(s)	185, 186, 211
Bse1I	ACTGG	2 cut(s)	166, 493
Bse3DI	GCAATG	1 cut(s)	33
BseBI	CCWGG	1 cut(s)	206
BseDI	CCNNGG	1 cut(s)	92
BseGI	GGATG	1 cut(s)	446
BseLI	CCNNNNNNNGG	3 cut(s)	185, 186, 211
BseMI	GCAATG	1 cut(s)	33
BseNI	ACTGG	2 cut(s)	166, 493
BseXI	GCAGC	1 cut(s)	370
BshFI	GGCC	3 cut(s)	204, 256, 318
BshNI	GGYRCC	2 cut(s)	491, 640
BsiSI	CCGG	1 cut(s)	319
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	3 cut(s)	185, 186, 211
BsmAI	GTCTC	1 cut(s)	521
BsmFI	GGGAC	1 cut(s)	178
BsmI	GAATGC	2 cut(s)	246, 555
BsnI	GGCC	3 cut(s)	204, 256, 318
Bso31I	GGTCTC	1 cut(s)	521
Bsp143I	GATC	5 cut(s)	7, 96, 262, 394, 581
BspACI	CCGC	1 cut(s)	108
BspANI	GGCC	3 cut(s)	204, 256, 318
BspLI	GGNNCC	3 cut(s)	147, 493, 642
BspPI	GGATC	2 cut(s)	104, 589
BspT107I	GGYRCC	2 cut(s)	491, 640
BspTNI	GGTCTC	1 cut(s)	521
BsrDI	GCAATG	1 cut(s)	33
BsrI	ACTGG	2 cut(s)	166, 493
BssECI	CCNNGG	1 cut(s)	92
BssMI	GATC	5 cut(s)	7, 96, 262, 394, 581
BssT1I	CCWWGG	1 cut(s)	92
Bst2UI	CCWGG	1 cut(s)	206
Bst4CI	ACNGT	1 cut(s)	114
Bst6I	CTCTTC	1 cut(s)	597
BstC8I	GCNNGC	4 cut(s)	377, 381, 496, 530
BstF5I	GGATG	1 cut(s)	446
BstKTI	GATC	5 cut(s)	10, 99, 265, 397, 584
BstMAI	GTCTC	1 cut(s)	521
BstMBI	GATC	5 cut(s)	7, 96, 262, 394, 581
BstMWI	GCNNNNNNNGC	1 cut(s)	443
BstNI	CCWGG	1 cut(s)	206
BstNSI	RCATGY	1 cut(s)	372
BstSCI	CCNGG	1 cut(s)	204
BstSFI	CTRYAG	2 cut(s)	233, 441
BstV1I	GCAGC	1 cut(s)	370
BstV2I	GAAGAC	1 cut(s)	414
BstX2I	RGATCY	2 cut(s)	394, 581
BstXI	CCANNNNNNTGG	1 cut(s)	156
BstYI	RGATCY	2 cut(s)	394, 581
BsuRI	GGCC	3 cut(s)	204, 256, 318
BtsCI	GGATG	1 cut(s)	446
BtsIMutI	CAGTG	1 cut(s)	110
Cac8I	GCNNGC	4 cut(s)	377, 381, 496, 530
Cfr13I	GGNCC	3 cut(s)	146, 202, 255
Csp6I	GTAC	1 cut(s)	486
CviAII	CATG	3 cut(s)	61, 369, 512
CviQI	GTAC	1 cut(s)	486
DpnI	GATC	5 cut(s)	9, 98, 264, 396, 583
DpnII	GATC	5 cut(s)	7, 96, 262, 394, 581
DraIII	CACNNNGTG	1 cut(s)	63
DriI	GACNNNNNGTC	1 cut(s)	171
EaeI	YGGCCR	1 cut(s)	316
Eam1104I	CTCTTC	1 cut(s)	597
Eam1105I	GACNNNNNGTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	597
Eco130I	CCWWGG	1 cut(s)	92
Eco31I	GGTCTC	1 cut(s)	521
Eco47I	GGWCC	1 cut(s)	146
Eco57I	CTGAAG	1 cut(s)	606
EcoO109I	RGGNCCY	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	204
EcoT14I	CCWWGG	1 cut(s)	92
EcoT22I	ATGCAT	1 cut(s)	248
ErhI	CCWWGG	1 cut(s)	92
FaeI	CATG	3 cut(s)	64, 372, 515
FaiI	YATR	7 cut(s)	62, 193, 195, 225, 370, 389, 513
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	3 cut(s)	60, 368, 511
FbaI	TGATCA	1 cut(s)	7
FblI	GTMKAC	2 cut(s)	118, 175
Fnu4HI	GCNGC	2 cut(s)	384, 652
FokI	GGATG	1 cut(s)	433
Fsp4HI	GCNGC	2 cut(s)	384, 652
FspBI	CTAG	2 cut(s)	560, 664
GluI	GCNGC	2 cut(s)	384, 652
HaeIII	GGCC	3 cut(s)	204, 256, 318
HapII	CCGG	1 cut(s)	319
Hin1II	CATG	3 cut(s)	64, 372, 515
HincII	GTYRAC	1 cut(s)	176
HindII	GTYRAC	1 cut(s)	176
HindIII	AAGCTT	1 cut(s)	526
HinfI	GANTC	1 cut(s)	328
HpaII	CCGG	1 cut(s)	319
HphI	GGTGA	1 cut(s)	322
Hpy166II	GTNNAC	2 cut(s)	119, 176
Hpy188I	TCNGA	4 cut(s)	267, 307, 451, 586
Hpy188III	TCNNGA	3 cut(s)	125, 278, 364
Hpy8I	GTNNAC	2 cut(s)	119, 176
HpyAV	CCTTC	4 cut(s)	512, 572, 581, 654
HpyCH4III	ACNGT	1 cut(s)	114
HpyCH4IV	ACGT	2 cut(s)	24, 283
HpyCH4V	TGCA	4 cut(s)	134, 246, 391, 651
HpyF10VI	GCNNNNNNNGC	1 cut(s)	443
HpySE526I	ACGT	2 cut(s)	24, 283
Hsp92II	CATG	3 cut(s)	64, 372, 515
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	5 cut(s)	7, 96, 262, 394, 581
Lsp1109I	GCAGC	1 cut(s)	370
LweI	GCATC	1 cut(s)	455
MaeI	CTAG	2 cut(s)	560, 664
MaeII	ACGT	2 cut(s)	24, 283
MaeIII	GTNAC	1 cut(s)	71
MalI	GATC	5 cut(s)	9, 98, 264, 396, 583
MboI	GATC	5 cut(s)	7, 96, 262, 394, 581
MboII	GAAGA	2 cut(s)	419, 614
MflI	RGATCY	2 cut(s)	394, 581
MluCI	AATT	2 cut(s)	140, 613
MnlI	CCTC	4 cut(s)	99, 132, 301, 619
Mph1103I	ATGCAT	1 cut(s)	248
MroXI	GAANNNNTTC	1 cut(s)	555
MseI	TTAA	1 cut(s)	339
MslI	CAYNNNNRTG	1 cut(s)	451
MspI	CCGG	1 cut(s)	319
MspR9I	CCNGG	1 cut(s)	206
Mva1269I	GAATGC	2 cut(s)	246, 555
MvaI	CCWGG	1 cut(s)	206
MwoI	GCNNNNNNNGC	1 cut(s)	443
NdeII	GATC	5 cut(s)	7, 96, 262, 394, 581
NlaIII	CATG	3 cut(s)	64, 372, 515
NlaIV	GGNNCC	3 cut(s)	147, 493, 642
NmuCI	GTSAC	1 cut(s)	71
NsiI	ATGCAT	1 cut(s)	248
NspI	RCATGY	1 cut(s)	372
PciI	ACATGT	1 cut(s)	368
PctI	GAATGC	2 cut(s)	246, 555
PdmI	GAANNNNTTC	1 cut(s)	555
PfeI	GAWTC	1 cut(s)	328
PkrI	GCNGC	2 cut(s)	385, 653
PscI	ACATGT	1 cut(s)	368
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	3 cut(s)	147, 493, 642
PspPI	GGNCC	3 cut(s)	146, 202, 255
PsuI	RGATCY	2 cut(s)	394, 581
RsaI	GTAC	1 cut(s)	487
RsaNI	GTAC	1 cut(s)	486
RseI	CAYNNNNRTG	1 cut(s)	451
SalI	GTCGAC	1 cut(s)	174
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	2 cut(s)	384, 652
Sau3AI	GATC	5 cut(s)	7, 96, 262, 394, 581
Sau96I	GGNCC	3 cut(s)	146, 202, 255
ScrFI	CCNGG	1 cut(s)	206
SfaNI	GCATC	1 cut(s)	455
SfcI	CTRYAG	2 cut(s)	233, 441
SinI	GGWCC	1 cut(s)	146
SmiMI	CAYNNNNRTG	1 cut(s)	451
SmlI	CTYRAG	1 cut(s)	123
SmoI	CTYRAG	1 cut(s)	123
Sse9I	AATT	2 cut(s)	140, 613
SsiI	CCGC	1 cut(s)	108
SspMI	CTAG	2 cut(s)	560, 664
StyD4I	CCNGG	1 cut(s)	204
StyI	CCWWGG	1 cut(s)	92
TaaI	ACNGT	1 cut(s)	114
TaiI	ACGT	2 cut(s)	27, 286
TaqI	TCGA	1 cut(s)	175
TasI	AATT	2 cut(s)	140, 613
TfiI	GAWTC	1 cut(s)	328
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	1 cut(s)	117
TseFI	GTSAC	1 cut(s)	71
TseI	GCWGC	2 cut(s)	383, 651
Tsp45I	GTSAC	1 cut(s)	71
TspDTI	ATGAA	1 cut(s)	500
TspRI	CASTG	1 cut(s)	117
VpaK11BI	GGWCC	1 cut(s)	146
XapI	RAATTY	1 cut(s)	613
XceI	RCATGY	1 cut(s)	372
XmiI	GTMKAC	2 cut(s)	118, 175
XmnI	GAANNNNTTC	1 cut(s)	555
XspI	CTAG	2 cut(s)	560, 664
Zsp2I	ATGCAT	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.