Rroxscaffold_1G00027020

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
34034796 .. 34037060
2265 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00027020.1

Sequence Viewer

Length: 507 bp
ATGAACCCCACTACATTGTACCAGGCTTATGAGCTAGCCTCAATCTTTGAAGAAAAATATATGAGTCACAAAGGCACAAGACCTCCTCAAAGGCACAAAGGTACAAGTCAACAACAAAGAAGCAACAATTTTGGAACTAGACAACAGACTCCATTTCCAGCACCACCTAATCCTTATCTAAAACAAGAGTTCCAACTACGGATAATGATAGGAAATTGTCTCAAGCTGATTATCATGATAGGAGGGCAAGGGGATTGTGCTTCTTTTGTGATGAACCTTATAAGGAAGGGCATGTTTGTAAAAAAATCTCATAATCAAGGTCGAGCTTTACTTATTGAAGGAGTAATTAGTCTTGTAGTGCAACATGAAGAAAATACGTTGGAGGATTTAATTGATATGATGAAACCAGAATATGGAAATGAGGAACCTCAGCTAGTTGTGCAGGTTGTGAGGGAGGTTGATAGCCCAATGTCTATGCAGCTTGAGGGAGGTTGTGCAAATCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

19.05

Weight (kDa)

6.9

Isoelectric Point (pI)

51.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0022627)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 281
Acc36I ACCTGC 1 cut(s) 433
AccB7I CCANNNNNTGG 1 cut(s) 413
AfaI GTAC 2 cut(s) 20, 103
AfiI CCNNNNNNNGG 1 cut(s) 413
AgsI TTSAA 2 cut(s) 50, 338
AjnI CCWGG 1 cut(s) 21
AluBI AGCT 5 cut(s) 34, 226, 326, 433, 481
AluI AGCT 5 cut(s) 34, 226, 326, 433, 481
Alw26I GTCTC 1 cut(s) 224
ApeKI GCWGC 1 cut(s) 478
AsuNHI GCTAGC 1 cut(s) 34
BbvCI CCTCAGC 1 cut(s) 429
BbvI GCAGC 1 cut(s) 490
BciT130I CCWGG 1 cut(s) 23
BcoDI GTCTC 1 cut(s) 224
BfaI CTAG 3 cut(s) 35, 138, 434
BfuAI ACCTGC 1 cut(s) 433
BisI GCNGC 1 cut(s) 479
BlsI GCNGC 1 cut(s) 480
Bme1390I CCNGG 1 cut(s) 23
BmiI GGNNCC 1 cut(s) 426
BmrFI CCNGG 1 cut(s) 23
BmtI GCTAGC 1 cut(s) 38
BplI GAGNNNNNCTC 2 cut(s) 23, 55
Bpu10I CCTNAGC 1 cut(s) 429
BpuEI CTTGAG 2 cut(s) 206, 503
BsaXI ACNNNNNCTCC 2 cut(s) 67, 97
Bsc4I CCNNNNNNNGG 1 cut(s) 413
BseBI CCWGG 1 cut(s) 23
BseLI CCNNNNNNNGG 1 cut(s) 413
BseMII CTCAG 1 cut(s) 443
BseRI GAGGAG 1 cut(s) 75
BseXI GCAGC 1 cut(s) 490
BsgI GTGCAG 1 cut(s) 461
BslI CCNNNNNNNGG 1 cut(s) 413
BsmAI GTCTC 1 cut(s) 224
BspCNI CTCAG 1 cut(s) 442
BspHI TCATGA 1 cut(s) 234
BspLI GGNNCC 1 cut(s) 426
BspMI ACCTGC 1 cut(s) 433
BspOI GCTAGC 1 cut(s) 38
Bst2UI CCWGG 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 36
BstDEI CTNAG 1 cut(s) 429
BstMAI GTCTC 1 cut(s) 224
BstMWI GCNNNNNNNGC 1 cut(s) 439
BstNI CCWGG 1 cut(s) 23
BstNSI RCATGY 1 cut(s) 295
BstSCI CCNGG 1 cut(s) 21
BstV1I GCAGC 1 cut(s) 490
BveI ACCTGC 1 cut(s) 433
Cac8I GCNNGC 1 cut(s) 36
CciI TCATGA 1 cut(s) 234
Csp6I GTAC 2 cut(s) 19, 102
CviAII CATG 3 cut(s) 235, 292, 365
CviJI RGCY 8 cut(s) 26, 34, 38, 226, 326, 433, 465, 481
CviKI_1 RGCY 8 cut(s) 26, 34, 38, 226, 326, 433, 465, 481
CviQI GTAC 2 cut(s) 19, 102
DdeI CTNAG 1 cut(s) 429
EcoRII CCWGG 1 cut(s) 21
FaeI CATG 3 cut(s) 238, 295, 368
FatI CATG 3 cut(s) 234, 291, 364
Fnu4HI GCNGC 1 cut(s) 479
Fsp4HI GCNGC 1 cut(s) 479
FspBI CTAG 3 cut(s) 35, 138, 434
GluI GCNGC 1 cut(s) 479
Hin1II CATG 3 cut(s) 238, 295, 368
HincII GTYRAC 1 cut(s) 110
HindII GTYRAC 1 cut(s) 110
HinfI GANTC 2 cut(s) 64, 148
Hpy166II GTNNAC 1 cut(s) 110
Hpy188III TCNNGA 1 cut(s) 235
Hpy8I GTNNAC 1 cut(s) 110
HpyAV CCTTC 2 cut(s) 280, 332
HpyCH4IV ACGT 1 cut(s) 377
HpyCH4V TGCA 4 cut(s) 361, 442, 478, 497
HpyF10VI GCNNNNNNNGC 1 cut(s) 439
HpyF3I CTNAG 1 cut(s) 429
HpySE526I ACGT 1 cut(s) 377
Hsp92II CATG 3 cut(s) 238, 295, 368
LpnPI CCDG 5 cut(s) 8, 35, 171, 420, 428
Lsp1109I GCAGC 1 cut(s) 490
MaeI CTAG 3 cut(s) 35, 138, 434
MaeII ACGT 1 cut(s) 377
MaeIII GTNAC 1 cut(s) 65
MboII GAAGA 2 cut(s) 62, 380
MluCI AATT 4 cut(s) 127, 214, 345, 390
MlyI GAGTC 2 cut(s) 73, 142
MmeI TCCRAC 2 cut(s) 217, 360
MseI TTAA 1 cut(s) 389
MspR9I CCNGG 1 cut(s) 23
MvaI CCWGG 1 cut(s) 23
MwoI GCNNNNNNNGC 1 cut(s) 439
NheI GCTAGC 1 cut(s) 34
NlaIII CATG 3 cut(s) 238, 295, 368
NlaIV GGNNCC 1 cut(s) 426
NmuCI GTSAC 1 cut(s) 65
NspI RCATGY 1 cut(s) 295
PagI TCATGA 1 cut(s) 234
PflMI CCANNNNNTGG 1 cut(s) 413
PkrI GCNGC 1 cut(s) 480
PleI GAGTC 2 cut(s) 72, 142
PpsI GAGTC 2 cut(s) 72, 142
PsiI TTATAA 1 cut(s) 281
Psp6I CCWGG 1 cut(s) 21
PspGI CCWGG 1 cut(s) 21
PspN4I GGNNCC 1 cut(s) 426
RsaI GTAC 2 cut(s) 20, 103
RsaNI GTAC 2 cut(s) 19, 102
SaqAI TTAA 1 cut(s) 389
SatI GCNGC 1 cut(s) 479
SchI GAGTC 2 cut(s) 73, 142
ScrFI CCNGG 1 cut(s) 23
SmlI CTYRAG 2 cut(s) 221, 482
SmoI CTYRAG 2 cut(s) 221, 482
Sse9I AATT 4 cut(s) 127, 214, 345, 390
SspMI CTAG 3 cut(s) 35, 138, 434
StyD4I CCNGG 1 cut(s) 21
TaiI ACGT 1 cut(s) 380
TaqI TCGA 1 cut(s) 322
TasI AATT 4 cut(s) 127, 214, 345, 390
Tru1I TTAA 1 cut(s) 389
Tru9I TTAA 1 cut(s) 389
TseFI GTSAC 1 cut(s) 65
TseI GCWGC 1 cut(s) 478
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 4 cut(s) 17, 287, 381, 416
TspGWI ACGGA 1 cut(s) 214
Van91I CCANNNNNTGG 1 cut(s) 413
XceI RCATGY 1 cut(s) 295
XspI CTAG 3 cut(s) 35, 138, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.