Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0026657

Physical Location & Seq

Genomic Coordinates Reverse (-)

44426826 .. 44432571

Gene Structure 5746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00117010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTTCAATCCTCATAGGGAGGAAGCTCTTTCTAGTTTCATGATCTATCCATCCAAACAGTTGCGAACGGATAAAGACACTAGGAAGGATTTCTCAGGGAACCATAATAAGAGGACTTCGGTGTCCGGACCACTCATCCATGGACCTGCATGGGCTAAATCTGGGAGGGAACGTGGTGATTCTAGTAGAACCAACTTGTCAAAGTTATCTGGTTTAGTATTGGCTAGGACGACTGCTCCCTCTGAAGATCAAATAGAGAAACCAGGTACTTCACGGCCTGAAACTGTAAGACAAGTAGGCAGATTTCAAGGGTCATTTGATGGAGAGGAGTTCACCAAAAAGCAGGATCAGATGCGTCACCCGCAGAGAATCACCGGTGGTCATCAGATAGAAGATGAGAAAGCAAATCTGAATGGTCGTGGTTCCAAGGGAAACAAAATATATGTCTCTGGCCCATTACTTGTTTCGTCAAACAATGTTGATCAGATGCTTAAAGAGCATGATCGTCGGATCCAAGAATATGCTCGACGGGCACGACTTGACAAGAATAGGCCTGGTAAGCAAGGGACGACAAATTCATCTTCTGCTTCAAGGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0071944 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

199

Amino Acids

22.35

Weight (kDa)

10.26

Isoelectric Point (pI)

46.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0026657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09600
rosa_roxburghii	Rroxscaffold_2G00117010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	121
Acc36I	ACCTGC	1 cut(s)	154
AccIII	TCCGGA	1 cut(s)	125
AciI	CCGC	1 cut(s)	362
AclWI	GGATC	3 cut(s)	354, 505, 518
AcsI	RAATTY	1 cut(s)	574
AcuI	CTGAAG	1 cut(s)	264
AfaI	GTAC	1 cut(s)	268
AgeI	ACCGGT	1 cut(s)	374
AgsI	TTSAA	3 cut(s)	7, 308, 591
AjnI	CCWGG	2 cut(s)	262, 553
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
Alw26I	GTCTC	1 cut(s)	451
AlwI	GGATC	3 cut(s)	354, 505, 518
Aor13HI	TCCGGA	1 cut(s)	125
AoxI	GGCC	3 cut(s)	275, 451, 551
ApoI	RAATTY	1 cut(s)	574
ArsI	GACNNNNNNTTYG	2 cut(s)	429, 461
AsiGI	ACCGGT	1 cut(s)	374
Asp700I	GAANNNNTTC	1 cut(s)	89
AspS9I	GGNCC	3 cut(s)	128, 143, 452
AsuHPI	GGTGA	4 cut(s)	188, 325, 350, 364
AvaII	GGWCC	2 cut(s)	128, 143
BaeGI	GKGCMC	1 cut(s)	535
BamHI	GGATCC	1 cut(s)	510
BccI	CCATC	2 cut(s)	58, 314
BceAI	ACGGC	1 cut(s)	290
BcgI	CGANNNNNNTGC	2 cut(s)	488, 522
BciT130I	CCWGG	2 cut(s)	264, 555
BclI	TGATCA	1 cut(s)	481
BcoDI	GTCTC	1 cut(s)	451
BfaI	CTAG	4 cut(s)	33, 81, 183, 225
BfuAI	ACCTGC	1 cut(s)	154
Bme1390I	CCNGG	2 cut(s)	264, 555
Bme18I	GGWCC	2 cut(s)	128, 143
BmgT120I	GGNCC	3 cut(s)	128, 143, 452
BmiI	GGNNCC	3 cut(s)	101, 424, 512
BmrFI	CCNGG	2 cut(s)	264, 555
BmsI	GCATC	2 cut(s)	342, 477
BsaJI	CCNNGG	2 cut(s)	139, 426
BsaWI	WCCGGW	2 cut(s)	125, 374
BsaXI	ACNNNNNCTCC	4 cut(s)	157, 187, 220, 250
Bse118I	RCCGGY	1 cut(s)	374
BseAI	TCCGGA	1 cut(s)	125
BseBI	CCWGG	2 cut(s)	264, 555
BseDI	CCNNGG	2 cut(s)	139, 426
BseGI	GGATG	2 cut(s)	50, 135
BseMII	CTCAG	1 cut(s)	108
BseRI	GAGGAG	1 cut(s)	341
BseSI	GKGCMC	1 cut(s)	535
BshFI	GGCC	3 cut(s)	277, 453, 553
BshTI	ACCGGT	1 cut(s)	374
BsiSI	CCGG	2 cut(s)	126, 375
BslFI	GGGAC	1 cut(s)	580
BsmAI	GTCTC	1 cut(s)	451
BsmFI	GGGAC	1 cut(s)	580
BsnI	GGCC	3 cut(s)	277, 453, 553
Bsp1286I	GDGCHC	1 cut(s)	535
Bsp13I	TCCGGA	1 cut(s)	125
Bsp143I	GATC	6 cut(s)	42, 247, 346, 481, 502, 510
Bsp19I	CCATGG	1 cut(s)	139
BspACI	CCGC	1 cut(s)	362
BspANI	GGCC	3 cut(s)	277, 453, 553
BspCNI	CTCAG	1 cut(s)	107
BspEI	TCCGGA	1 cut(s)	125
BspHI	TCATGA	1 cut(s)	39
BspLI	GGNNCC	3 cut(s)	101, 424, 512
BspMI	ACCTGC	1 cut(s)	154
BspPI	GGATC	3 cut(s)	354, 505, 518
BsrFI	RCCGGY	1 cut(s)	374
BssAI	RCCGGY	1 cut(s)	374
BssECI	CCNNGG	2 cut(s)	139, 426
BssMI	GATC	6 cut(s)	42, 247, 346, 481, 502, 510
BssT1I	CCWWGG	2 cut(s)	139, 426
Bst2UI	CCWGG	2 cut(s)	264, 555
Bst4CI	ACNGT	2 cut(s)	60, 286
BstDEI	CTNAG	1 cut(s)	94
BstDSI	CCRYGG	1 cut(s)	139
BstF5I	GGATG	2 cut(s)	50, 135
BstKTI	GATC	6 cut(s)	45, 250, 349, 484, 505, 513
BstMAI	GTCTC	1 cut(s)	451
BstMBI	GATC	6 cut(s)	42, 247, 346, 481, 502, 510
BstMWI	GCNNNNNNNGC	4 cut(s)	361, 496, 530, 559
BstNI	CCWGG	2 cut(s)	264, 555
BstSCI	CCNGG	2 cut(s)	262, 553
BstSLI	GKGCMC	1 cut(s)	535
BstX2I	RGATCY	1 cut(s)	510
BstYI	RGATCY	1 cut(s)	510
BsuRI	GGCC	3 cut(s)	277, 453, 553
BtgI	CCRYGG	1 cut(s)	139
BtsCI	GGATG	2 cut(s)	50, 135
BveI	ACCTGC	1 cut(s)	154
CciI	TCATGA	1 cut(s)	39
Cfr10I	RCCGGY	1 cut(s)	374
Cfr13I	GGNCC	3 cut(s)	128, 143, 452
CseI	GACGC	1 cut(s)	344
CsiI	ACCWGGT	1 cut(s)	262
Csp6I	GTAC	1 cut(s)	267
CspAI	ACCGGT	1 cut(s)	374
CviAII	CATG	4 cut(s)	40, 140, 150, 500
CviJI	RGCY	6 cut(s)	26, 155, 224, 277, 453, 553
CviKI_1	RGCY	6 cut(s)	26, 155, 224, 277, 453, 553
CviQI	GTAC	1 cut(s)	267
DdeI	CTNAG	1 cut(s)	94
DpnI	GATC	6 cut(s)	44, 249, 348, 483, 504, 512
DpnII	GATC	6 cut(s)	42, 247, 346, 481, 502, 510
DrdI	GACNNNNNNGTC	1 cut(s)	121
DseDI	GACNNNNNNGTC	1 cut(s)	121
Eco130I	CCWWGG	2 cut(s)	139, 426
Eco147I	AGGCCT	1 cut(s)	553
Eco47I	GGWCC	2 cut(s)	128, 143
Eco57I	CTGAAG	1 cut(s)	264
EcoRII	CCWGG	2 cut(s)	262, 553
EcoT14I	CCWWGG	2 cut(s)	139, 426
ErhI	CCWWGG	2 cut(s)	139, 426
FaeI	CATG	4 cut(s)	43, 143, 153, 503
FaiI	YATR	9 cut(s)	15, 41, 105, 141, 151, 442, 444, 501, 522
FaqI	GGGAC	1 cut(s)	580
FatI	CATG	4 cut(s)	39, 139, 149, 499
FauI	CCCGC	1 cut(s)	369
FbaI	TGATCA	1 cut(s)	481
FokI	GGATG	2 cut(s)	37, 122
FspBI	CTAG	4 cut(s)	33, 81, 183, 225
HaeIII	GGCC	3 cut(s)	277, 453, 553
HapII	CCGG	2 cut(s)	126, 375
HgaI	GACGC	1 cut(s)	344
Hin1II	CATG	4 cut(s)	43, 143, 153, 503
HinfI	GANTC	2 cut(s)	179, 369
HpaII	CCGG	2 cut(s)	126, 375
HphI	GGTGA	4 cut(s)	188, 325, 350, 364
Hpy166II	GTNNAC	1 cut(s)	333
Hpy188I	TCNGA	6 cut(s)	244, 351, 387, 411, 486, 510
Hpy188III	TCNNGA	2 cut(s)	40, 126
Hpy8I	GTNNAC	1 cut(s)	333
Hpy99I	CGWCG	2 cut(s)	510, 531
HpyAV	CCTTC	1 cut(s)	79
HpyCH4III	ACNGT	2 cut(s)	60, 286
HpyCH4IV	ACGT	1 cut(s)	172
HpyCH4V	TGCA	1 cut(s)	149
HpyF10VI	GCNNNNNNNGC	4 cut(s)	361, 496, 530, 559
HpyF3I	CTNAG	1 cut(s)	94
HpySE526I	ACGT	1 cut(s)	172
Hsp92II	CATG	4 cut(s)	43, 143, 153, 503
Kpn2I	TCCGGA	1 cut(s)	125
Ksp22I	TGATCA	1 cut(s)	481
Kzo9I	GATC	6 cut(s)	42, 247, 346, 481, 502, 510
LmnI	GCTCC	1 cut(s)	241
LweI	GCATC	2 cut(s)	342, 477
MabI	ACCWGGT	1 cut(s)	262
MaeI	CTAG	4 cut(s)	33, 81, 183, 225
MaeII	ACGT	1 cut(s)	172
MaeIII	GTNAC	1 cut(s)	356
MalI	GATC	6 cut(s)	44, 249, 348, 483, 504, 512
MboI	GATC	6 cut(s)	42, 247, 346, 481, 502, 510
MboII	GAAGA	3 cut(s)	257, 404, 573
MflI	RGATCY	1 cut(s)	510
MhlI	GDGCHC	1 cut(s)	535
MluCI	AATT	1 cut(s)	574
MmeI	TCCRAC	1 cut(s)	488
MnlI	CCTC	6 cut(s)	13, 21, 105, 159, 250, 319
MroI	TCCGGA	1 cut(s)	125
MroXI	GAANNNNTTC	1 cut(s)	89
MseI	TTAA	2 cut(s)	492, 598
MspI	CCGG	2 cut(s)	126, 375
MspR9I	CCNGG	2 cut(s)	264, 555
MvaI	CCWGG	2 cut(s)	264, 555
MwoI	GCNNNNNNNGC	4 cut(s)	361, 496, 530, 559
NcoI	CCATGG	1 cut(s)	139
NdeII	GATC	6 cut(s)	42, 247, 346, 481, 502, 510
NlaIII	CATG	4 cut(s)	43, 143, 153, 503
NlaIV	GGNNCC	3 cut(s)	101, 424, 512
NmuCI	GTSAC	1 cut(s)	356
PagI	TCATGA	1 cut(s)	39
PceI	AGGCCT	1 cut(s)	553
PcsI	WCGNNNNNNNCGW	1 cut(s)	532
PdmI	GAANNNNTTC	1 cut(s)	89
PfeI	GAWTC	2 cut(s)	179, 369
PinAI	ACCGGT	1 cut(s)	374
Psp6I	CCWGG	2 cut(s)	262, 553
PspGI	CCWGG	2 cut(s)	262, 553
PspN4I	GGNNCC	3 cut(s)	101, 424, 512
PspPI	GGNCC	3 cut(s)	128, 143, 452
PsuI	RGATCY	1 cut(s)	510
RsaI	GTAC	1 cut(s)	268
RsaNI	GTAC	1 cut(s)	267
SaqAI	TTAA	2 cut(s)	492, 598
Sau3AI	GATC	6 cut(s)	42, 247, 346, 481, 502, 510
Sau96I	GGNCC	3 cut(s)	128, 143, 452
ScrFI	CCNGG	2 cut(s)	264, 555
SduI	GDGCHC	1 cut(s)	535
SetI	ASST	4 cut(s)	28, 148, 175, 268
SexAI	ACCWGGT	1 cut(s)	262
SfaNI	GCATC	2 cut(s)	342, 477
SgrAI	CRCCGGYG	1 cut(s)	374
SinI	GGWCC	2 cut(s)	128, 143
Sse9I	AATT	1 cut(s)	574
SseBI	AGGCCT	1 cut(s)	553
SsiI	CCGC	1 cut(s)	362
SspMI	CTAG	4 cut(s)	33, 81, 183, 225
StuI	AGGCCT	1 cut(s)	553
StyD4I	CCNGG	2 cut(s)	262, 553
StyI	CCWWGG	2 cut(s)	139, 426
TaaI	ACNGT	2 cut(s)	60, 286
TaiI	ACGT	1 cut(s)	175
TaqI	TCGA	1 cut(s)	526
TasI	AATT	1 cut(s)	574
TfiI	GAWTC	2 cut(s)	179, 369
Tru1I	TTAA	2 cut(s)	492, 598
Tru9I	TTAA	2 cut(s)	492, 598
TseFI	GTSAC	1 cut(s)	356
Tsp45I	GTSAC	1 cut(s)	356
TspDTI	ATGAA	2 cut(s)	28, 567
TspGWI	ACGGA	1 cut(s)	83
VpaK11BI	GGWCC	2 cut(s)	128, 143
XapI	RAATTY	1 cut(s)	574
XmnI	GAANNNNTTC	1 cut(s)	89
XspI	CTAG	4 cut(s)	33, 81, 183, 225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.