Rroxscaffold_2G00119490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0019728
Physical Location & Seq
Reverse (-)
51314765 .. 51318560
3796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00119490.1

Sequence Viewer

Length: 543 bp
ATGAAAGAGGAGAAGGAGGAGTCAGTCTTCTTTGAAGATCGAGGAATAAATCATACAATTATGCCATTCGGAAGAAGTCTTCTACAGAGGGAAAGCCTGTTACGAGTAAGTGGAGAGGAAAGATCTCCAGAGATTCTTATCTCATTCCATTCCAGTGGCTCGACCAGTAACCAATGGCGAAAACTAAAAAATCCATGGTTTCCCGGTAGAACCCCATTTCGCCCAAGTTGTTGCCAAACCGGAAAAAAGAAGCGGTTTTTCGCACAGCTTGCTCATAGTGCAGGTCCCACTTGTATATCGTATTTGGCCGAAGAAGCATCGGAGGAGTTCTTACCTTCTTGGGACTCCATGGACCAAGATCTGCTTTCATTATATGGGCAATACCGATCTACTTTAGTAGATCATATGGATGTAGAAAAAGCTTATGATTTTGATGAAATGGAAACATCTCTTTTCCATTTCTATTTACCTAGTTCATATCTTTGTTTCGTGTGTTTCCGGGAGGAATTCGATCTCTTCAATCTCGGGATACCACCTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

20.98

Weight (kDa)

5.28

Isoelectric Point (pI)

56.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019728)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g21890
pyrus_communis pycom461g00110
rosa_chinensis RchiOBHm_MTg0499041
rosa_laevigata RLG00000000411 RLG00000000423
rosa_roxburghii Rroxscaffold_2G00119490
rosa_samantha Rh1BG018700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 272
AciI CCGC 1 cut(s) 253
AcoI YGGCCR 1 cut(s) 306
AcsI RAATTY 1 cut(s) 506
AgsI TTSAA 2 cut(s) 35, 520
AluBI AGCT 2 cut(s) 268, 422
AluI AGCT 2 cut(s) 268, 422
Ama87I CYCGRG 1 cut(s) 524
AoxI GGCC 1 cut(s) 306
ApoI RAATTY 1 cut(s) 506
AspS9I GGNCC 2 cut(s) 284, 352
AsuC2I CCSGG 2 cut(s) 204, 500
AvaI CYCGRG 1 cut(s) 524
AvaII GGWCC 2 cut(s) 284, 352
BbsI GAAGAC 2 cut(s) 19, 71
BciVI GTATCC 1 cut(s) 522
BcnI CCSGG 2 cut(s) 204, 500
BfaI CTAG 1 cut(s) 471
BfmI CTRYAG 1 cut(s) 83
BfuAI ACCTGC 1 cut(s) 272
BfuI GTATCC 1 cut(s) 522
BglII AGATCT 2 cut(s) 122, 358
Bme1390I CCNGG 2 cut(s) 204, 500
Bme18I GGWCC 2 cut(s) 284, 352
BmeT110I CYCGRG 1 cut(s) 524
BmgT120I GGNCC 2 cut(s) 284, 352
BmiI GGNNCC 1 cut(s) 286
BmrFI CCNGG 2 cut(s) 204, 500
BmsI GCATC 1 cut(s) 326
BpiI GAAGAC 2 cut(s) 19, 71
BpmI CTGGAG 1 cut(s) 111
BpuMI CCSGG 2 cut(s) 204, 500
BsaBI GATNNNNATC 1 cut(s) 137
BsaJI CCNNGG 2 cut(s) 194, 348
BsaWI WCCGGW 1 cut(s) 239
Bse1I ACTGG 2 cut(s) 153, 165
Bse8I GATNNNNATC 1 cut(s) 137
BseDI CCNNGG 2 cut(s) 194, 348
BseGI GGATG 1 cut(s) 415
BseJI GATNNNNATC 1 cut(s) 137
BseNI ACTGG 2 cut(s) 153, 165
BseRI GAGGAG 3 cut(s) 23, 32, 338
BsgI GTGCAG 1 cut(s) 300
BshFI GGCC 1 cut(s) 308
BsiHKCI CYCGRG 1 cut(s) 524
BsiSI CCGG 3 cut(s) 204, 240, 499
BslFI GGGAC 2 cut(s) 270, 356
BsmFI GGGAC 2 cut(s) 270, 356
BsnI GGCC 1 cut(s) 308
BsoBI CYCGRG 1 cut(s) 524
Bsp143I GATC 6 cut(s) 37, 122, 358, 386, 400, 511
Bsp19I CCATGG 2 cut(s) 194, 348
BspACI CCGC 1 cut(s) 253
BspANI GGCC 1 cut(s) 308
BspLI GGNNCC 1 cut(s) 286
BspMI ACCTGC 1 cut(s) 272
BsrI ACTGG 2 cut(s) 153, 165
BssECI CCNNGG 2 cut(s) 194, 348
BssMI GATC 6 cut(s) 37, 122, 358, 386, 400, 511
BssT1I CCWWGG 2 cut(s) 194, 348
Bst6I CTCTTC 1 cut(s) 521
BstAPI GCANNNNNTGC 1 cut(s) 269
BstC8I GCNNGC 1 cut(s) 270
BstDSI CCRYGG 2 cut(s) 194, 348
BstF5I GGATG 1 cut(s) 415
BstKTI GATC 6 cut(s) 40, 125, 361, 389, 403, 514
BstMBI GATC 6 cut(s) 37, 122, 358, 386, 400, 511
BstMWI GCNNNNNNNGC 3 cut(s) 269, 278, 314
BstSCI CCNGG 2 cut(s) 202, 498
BstSFI CTRYAG 1 cut(s) 83
BstV2I GAAGAC 2 cut(s) 19, 71
BstX2I RGATCY 2 cut(s) 122, 358
BstXI CCANNNNNNTGG 1 cut(s) 155
BstYI RGATCY 2 cut(s) 122, 358
BsuI GTATCC 1 cut(s) 522
BsuRI GGCC 1 cut(s) 308
BtgI CCRYGG 2 cut(s) 194, 348
BtsCI GGATG 1 cut(s) 415
BtsIMutI CAGTG 1 cut(s) 160
BveI ACCTGC 1 cut(s) 272
Cac8I GCNNGC 1 cut(s) 270
Cfr13I GGNCC 2 cut(s) 284, 352
CviAII CATG 2 cut(s) 195, 349
CviJI RGCY 5 cut(s) 96, 159, 268, 308, 422
CviKI_1 RGCY 5 cut(s) 96, 159, 268, 308, 422
DpnI GATC 6 cut(s) 39, 124, 360, 388, 402, 513
DpnII GATC 6 cut(s) 37, 122, 358, 386, 400, 511
EaeI YGGCCR 1 cut(s) 306
Eam1104I CTCTTC 1 cut(s) 521
EarI CTCTTC 1 cut(s) 521
Eco130I CCWWGG 2 cut(s) 194, 348
Eco47I GGWCC 2 cut(s) 284, 352
Eco88I CYCGRG 1 cut(s) 524
EcoO109I RGGNCCY 1 cut(s) 284
EcoRI GAATTC 1 cut(s) 506
EcoT14I CCWWGG 2 cut(s) 194, 348
ErhI CCWWGG 2 cut(s) 194, 348
FaeI CATG 2 cut(s) 198, 352
FalI AAGNNNNNCTT 2 cut(s) 348, 380
FaqI GGGAC 2 cut(s) 270, 356
FatI CATG 2 cut(s) 194, 348
FauNDI CATATG 1 cut(s) 405
FokI GGATG 1 cut(s) 422
FspBI CTAG 1 cut(s) 471
GsuI CTGGAG 1 cut(s) 111
HaeIII GGCC 1 cut(s) 308
HapII CCGG 3 cut(s) 204, 240, 499
Hin1II CATG 2 cut(s) 198, 352
HindIII AAGCTT 1 cut(s) 420
HinfI GANTC 3 cut(s) 20, 133, 344
HpaII CCGG 3 cut(s) 204, 240, 499
Hpy188I TCNGA 2 cut(s) 71, 322
Hpy188III TCNNGA 2 cut(s) 128, 526
HpyAV CCTTC 2 cut(s) 7, 345
HpyCH4V TGCA 1 cut(s) 281
HpyF10VI GCNNNNNNNGC 3 cut(s) 269, 278, 314
Hsp92II CATG 2 cut(s) 198, 352
Kzo9I GATC 6 cut(s) 37, 122, 358, 386, 400, 511
LpnPI CCDG 8 cut(s) 110, 141, 166, 178, 217, 253, 267, 512
LweI GCATC 1 cut(s) 326
MaeI CTAG 1 cut(s) 471
MaeIII GTNAC 2 cut(s) 99, 167
MalI GATC 6 cut(s) 39, 124, 360, 388, 402, 513
MboI GATC 6 cut(s) 37, 122, 358, 386, 400, 511
MboII GAAGA 6 cut(s) 19, 47, 71, 84, 323, 508
MflI RGATCY 2 cut(s) 122, 358
MluCI AATT 2 cut(s) 57, 506
MlyI GAGTC 2 cut(s) 29, 338
MnlI CCTC 6 cut(s) 10, 35, 81, 109, 316, 496
MslI CAYNNNNRTG 2 cut(s) 153, 408
MspI CCGG 3 cut(s) 204, 240, 499
MspR9I CCNGG 2 cut(s) 204, 500
MwoI GCNNNNNNNGC 3 cut(s) 269, 278, 314
NciI CCSGG 2 cut(s) 204, 500
NcoI CCATGG 2 cut(s) 194, 348
NdeI CATATG 1 cut(s) 405
NdeII GATC 6 cut(s) 37, 122, 358, 386, 400, 511
NlaIII CATG 2 cut(s) 198, 352
NlaIV GGNNCC 1 cut(s) 286
PfeI GAWTC 1 cut(s) 133
PfoI TCCNGGA 1 cut(s) 498
PleI GAGTC 2 cut(s) 28, 338
PpsI GAGTC 2 cut(s) 28, 338
PpuMI RGGWCCY 1 cut(s) 284
Psp5II RGGWCCY 1 cut(s) 284
PspN4I GGNNCC 1 cut(s) 286
PspPI GGNCC 2 cut(s) 284, 352
PspPPI RGGWCCY 1 cut(s) 284
PsuI RGATCY 2 cut(s) 122, 358
RseI CAYNNNNRTG 2 cut(s) 153, 408
Sau3AI GATC 6 cut(s) 37, 122, 358, 386, 400, 511
Sau96I GGNCC 2 cut(s) 284, 352
SchI GAGTC 2 cut(s) 29, 338
ScrFI CCNGG 2 cut(s) 204, 500
SetI ASST 6 cut(s) 270, 286, 337, 424, 472, 538
SfaNI GCATC 1 cut(s) 326
SfcI CTRYAG 1 cut(s) 83
SinI GGWCC 2 cut(s) 284, 352
SmiMI CAYNNNNRTG 2 cut(s) 153, 408
Sse9I AATT 2 cut(s) 57, 506
SsiI CCGC 1 cut(s) 253
SspMI CTAG 1 cut(s) 471
StyD4I CCNGG 2 cut(s) 202, 498
StyI CCWWGG 2 cut(s) 194, 348
TaqI TCGA 3 cut(s) 40, 161, 510
TasI AATT 2 cut(s) 57, 506
TfiI GAWTC 1 cut(s) 133
TscAI CASTG 1 cut(s) 160
TspDTI ATGAA 4 cut(s) 17, 357, 450, 465
TspRI CASTG 1 cut(s) 160
VpaK11BI GGWCC 2 cut(s) 284, 352
XapI RAATTY 1 cut(s) 506
XspI CTAG 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.