Rroxscaffold_2G00119500

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
51339138 .. 51339468
331 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00119500.1

Sequence Viewer

Length: 261 bp
ATGGTGCGGTATTTTCTTTTGGAGTCGTGTCGTCCAGATGACAAGTATTTGTTGTCTGTGCGGGATGATTTGGAGCTCATGCTCAGATATTGGGTGGAATCTCTCGTACGATATGTCCGGTGGTATGAGGAAGCCTGTTGTGATTTCACTTTACCTTTGGAACAACTATTAGATCCACCTGCGGTTTGTCTACGTCCTGATCGGAAAGACCTTTTAAATGTTATGACTAAATCCGTCAGCGTCGCTGTCCGCTACCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

10.34

Weight (kDa)

5.04

Isoelectric Point (pI)

44.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029499)

Species Orthologous Gene IDs
pyrus_communis pycom461g00290
rosa_roxburghii Rroxscaffold_2G00119500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 187
Acc36I ACCTGC 1 cut(s) 187
AccI GTMKAC 1 cut(s) 190
AciI CCGC 4 cut(s) 7, 61, 182, 250
AclWI GGATC 1 cut(s) 167
AfaI GTAC 1 cut(s) 108
AluBI AGCT 1 cut(s) 76
AluI AGCT 1 cut(s) 76
Alw21I GWGCWC 1 cut(s) 78
AlwI GGATC 1 cut(s) 167
BanII GRGCYC 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 78
BfuAI ACCTGC 1 cut(s) 187
BsaWI WCCGGW 1 cut(s) 117
BseGI GGATG 1 cut(s) 70
BseMII CTCAG 1 cut(s) 97
BsiHKAI GWGCWC 1 cut(s) 78
BsiSI CCGG 1 cut(s) 118
BsiWI CGTACG 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 78
Bsp143I GATC 2 cut(s) 172, 199
BspACI CCGC 4 cut(s) 7, 61, 182, 250
BspCNI CTCAG 1 cut(s) 96
BspMI ACCTGC 1 cut(s) 187
BspPI GGATC 1 cut(s) 167
BssMI GATC 2 cut(s) 172, 199
BstDEI CTNAG 1 cut(s) 83
BstF5I GGATG 1 cut(s) 70
BstKTI GATC 2 cut(s) 175, 202
BstMBI GATC 2 cut(s) 172, 199
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
BtsCI GGATG 1 cut(s) 70
BveI ACCTGC 1 cut(s) 187
CseI GACGC 1 cut(s) 229
Csp6I GTAC 1 cut(s) 107
CviAII CATG 1 cut(s) 79
CviJI RGCY 2 cut(s) 76, 134
CviKI_1 RGCY 2 cut(s) 76, 134
CviQI GTAC 1 cut(s) 107
DdeI CTNAG 1 cut(s) 83
DpnI GATC 2 cut(s) 174, 201
DpnII GATC 2 cut(s) 172, 199
DraI TTTAAA 1 cut(s) 216
Ecl136II GAGCTC 1 cut(s) 76
Eco24I GRGCYC 1 cut(s) 78
Eco53kI GAGCTC 1 cut(s) 76
EcoICRI GAGCTC 1 cut(s) 76
EcoT38I GRGCYC 1 cut(s) 78
FaeI CATG 1 cut(s) 82
FaiI YATR 4 cut(s) 80, 114, 126, 224
FatI CATG 1 cut(s) 78
FauI CCCGC 1 cut(s) 54
FblI GTMKAC 1 cut(s) 190
FokI GGATG 1 cut(s) 77
FriOI GRGCYC 1 cut(s) 78
HapII CCGG 1 cut(s) 118
HgaI GACGC 1 cut(s) 229
Hin1II CATG 1 cut(s) 82
HinfI GANTC 2 cut(s) 23, 98
HpaII CCGG 1 cut(s) 118
Hpy166II GTNNAC 1 cut(s) 191
Hpy188I TCNGA 2 cut(s) 86, 204
Hpy188III TCNNGA 2 cut(s) 35, 197
Hpy8I GTNNAC 1 cut(s) 191
Hpy99I CGWCG 1 cut(s) 245
HpyCH4IV ACGT 1 cut(s) 193
HpyF3I CTNAG 1 cut(s) 83
HpySE526I ACGT 1 cut(s) 193
Hsp92II CATG 1 cut(s) 82
Kzo9I GATC 2 cut(s) 172, 199
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 5 cut(s) 48, 131, 148, 192, 210
MaeII ACGT 1 cut(s) 193
MalI GATC 2 cut(s) 174, 201
MboI GATC 2 cut(s) 172, 199
MflI RGATCY 1 cut(s) 172
MhlI GDGCHC 1 cut(s) 78
MlyI GAGTC 1 cut(s) 32
MnlI CCTC 1 cut(s) 121
MseI TTAA 2 cut(s) 215, 259
MspI CCGG 1 cut(s) 118
NdeII GATC 2 cut(s) 172, 199
NlaIII CATG 1 cut(s) 82
PaqCI CACCTGC 1 cut(s) 187
PfeI GAWTC 1 cut(s) 98
Pfl23II CGTACG 1 cut(s) 106
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
Psp124BI GAGCTC 1 cut(s) 78
PspLI CGTACG 1 cut(s) 106
PsuI RGATCY 1 cut(s) 172
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
SacI GAGCTC 1 cut(s) 78
SaqAI TTAA 2 cut(s) 215, 259
Sau3AI GATC 2 cut(s) 172, 199
SchI GAGTC 1 cut(s) 32
SduI GDGCHC 1 cut(s) 78
SetI ASST 6 cut(s) 78, 157, 181, 196, 213, 258
SsiI CCGC 4 cut(s) 7, 61, 182, 250
SstI GAGCTC 1 cut(s) 78
TaiI ACGT 1 cut(s) 196
TfiI GAWTC 1 cut(s) 98
Tru1I TTAA 2 cut(s) 215, 259
Tru9I TTAA 2 cut(s) 215, 259
TspGWI ACGGA 1 cut(s) 223
XmiI GTMKAC 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.