Rroxscaffold_2G00139840

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
78145175 .. 78146163
989 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00139840.1

Sequence Viewer

Length: 192 bp
ATGTGTTTCAGGGTGGAGTGCAAACAATGTGGGAAGTACTCGTGGGGAGGGTGTGGAGAGCACTTGAAGACTCTCTACGGCAGCATTGATAAGGGGAAGCACTGCATGTGCCGTTCATGGCCTGGGGTTGTTATACCCAAAGAAGAATCACCTACTGAAACACAAGCAGTAGCCTCTGCCTCAGGAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

63

Amino Acids

6.88

Weight (kDa)

8.59

Isoelectric Point (pI)

36.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020420)

Species Orthologous Gene IDs
prunus_persica Prupe.7G145500_v2.0.a1
rosa_roxburghii Rroxscaffold_2G00139840
rosa_samantha Rh2AG161300 Rh2BG168100 Rh2DG167000
rosa_wichuraiana Rw2G012660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 38
AgsI TTSAA 1 cut(s) 67
AjnI CCWGG 1 cut(s) 121
Alw21I GWGCWC 1 cut(s) 63
AoxI GGCC 1 cut(s) 119
ApeKI GCWGC 1 cut(s) 81
AsuHPI GGTGA 1 cut(s) 141
AxyI CCTNAGG 1 cut(s) 181
BarI GAAGNNNNNNTAC 2 cut(s) 59, 91
BauI CACGAG 1 cut(s) 40
BbsI GAAGAC 1 cut(s) 74
Bbv12I GWGCWC 1 cut(s) 63
BbvI GCAGC 1 cut(s) 93
BceAI ACGGC 2 cut(s) 94, 96
BciT130I CCWGG 1 cut(s) 123
BisI GCNGC 1 cut(s) 82
BlsI GCNGC 1 cut(s) 83
BmcAI AGTACT 1 cut(s) 38
Bme1390I CCNGG 1 cut(s) 123
BmrFI CCNGG 1 cut(s) 123
BpiI GAAGAC 1 cut(s) 74
BsaJI CCNNGG 1 cut(s) 122
Bse21I CCTNAGG 1 cut(s) 181
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 1 cut(s) 122
BseXI GCAGC 1 cut(s) 93
BshFI GGCC 1 cut(s) 121
BsiHKAI GWGCWC 1 cut(s) 63
BsnI GGCC 1 cut(s) 121
Bsp1286I GDGCHC 1 cut(s) 63
BspANI GGCC 1 cut(s) 121
BssECI CCNNGG 1 cut(s) 122
BssSI CACGAG 1 cut(s) 40
Bst2BI CACGAG 1 cut(s) 40
Bst2UI CCWGG 1 cut(s) 123
BstDEI CTNAG 1 cut(s) 181
BstNI CCWGG 1 cut(s) 123
BstNSI RCATGY 1 cut(s) 109
BstSCI CCNGG 1 cut(s) 121
BstV1I GCAGC 1 cut(s) 93
BstV2I GAAGAC 1 cut(s) 74
Bsu36I CCTNAGG 1 cut(s) 181
BsuRI GGCC 1 cut(s) 121
BtsI GCAGTG 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 100
Csp6I GTAC 1 cut(s) 37
CspCI CAANNNNNGTGG 2 cut(s) 10, 45
CviAII CATG 2 cut(s) 106, 117
CviJI RGCY 2 cut(s) 121, 173
CviKI_1 RGCY 2 cut(s) 121, 173
CviQI GTAC 1 cut(s) 37
DdeI CTNAG 1 cut(s) 181
Eco81I CCTNAGG 1 cut(s) 181
EcoRII CCWGG 1 cut(s) 121
FaeI CATG 2 cut(s) 109, 120
FaiI YATR 3 cut(s) 107, 118, 134
FatI CATG 2 cut(s) 105, 116
Fnu4HI GCNGC 1 cut(s) 82
Fsp4HI GCNGC 1 cut(s) 82
GluI GCNGC 1 cut(s) 82
HaeIII GGCC 1 cut(s) 121
Hin1II CATG 2 cut(s) 109, 120
HinfI GANTC 2 cut(s) 70, 146
HphI GGTGA 1 cut(s) 141
Hpy188III TCNNGA 1 cut(s) 183
HpyCH4V TGCA 2 cut(s) 21, 105
HpyF3I CTNAG 1 cut(s) 181
Hsp92II CATG 2 cut(s) 109, 120
LpnPI CCDG 3 cut(s) 108, 135, 168
Lsp1109I GCAGC 1 cut(s) 93
MboII GAAGA 2 cut(s) 79, 155
MhlI GDGCHC 1 cut(s) 63
MlyI GAGTC 1 cut(s) 64
MnlI CCTC 3 cut(s) 41, 184, 190
MspR9I CCNGG 1 cut(s) 123
MvaI CCWGG 1 cut(s) 123
NlaIII CATG 2 cut(s) 109, 120
NspI RCATGY 1 cut(s) 109
PfeI GAWTC 1 cut(s) 146
PkrI GCNGC 1 cut(s) 83
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
Psp6I CCWGG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 121
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
SatI GCNGC 1 cut(s) 82
ScaI AGTACT 1 cut(s) 38
SchI GAGTC 1 cut(s) 64
ScrFI CCNGG 1 cut(s) 123
SduI GDGCHC 1 cut(s) 63
SetI ASST 1 cut(s) 154
SgeI CNNG 9 cut(s) 22, 52, 54, 76, 118, 129, 134, 135, 176
StyD4I CCNGG 1 cut(s) 121
TatI WGTACW 1 cut(s) 36
TfiI GAWTC 1 cut(s) 146
TscAI CASTG 1 cut(s) 107
TseI GCWGC 1 cut(s) 81
TspDTI ATGAA 1 cut(s) 105
TspRI CASTG 1 cut(s) 107
XceI RCATGY 1 cut(s) 109
ZrmI AGTACT 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.