Rroxscaffold_2G00147610

Histone acetyltransferase type B catalytic

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
85374935 .. 85377865
2931 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00147610.1

Sequence Viewer

Length: 390 bp
ATGCCAGCCACAAGAGTCATTGAGGATGTGAAGAAAAGGTTGAAAATCAACAAGAAACAATTTCTTCAATGTTGGGATGTTTTCATCTATCTTGGCCTCGATCCAGTGGACAAGTACATGGAGGATTTTGTGAGCATTGTTTCTAATCAGATGAAGGAAGATCTCATAGGAAAAGAATATGGGACTGGTGGGAAGCAAGTAATTGAAGTTCCAAGCGAGTACATACCGGAGATGTCATTTGTTATGTTCAAGTCCAATGCAGGTGAAGCTACTAGTACTGTTCAGGTAGATGAAAATCAACCAAATCAGGAGAAGCAACTCCAGCAGTTGGTTGATGAGAGAGTGAATAGATCAAATCAATCGCAGATAAAGTATCTCAGCATTGCATAA

Protein Analysis

129

Amino Acids

14.87

Weight (kDa)

5.04

Isoelectric Point (pI)

53.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022673)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0093931
rosa_multiflora Rmu_co8480641.1_g000001
rosa_roxburghii Rroxscaffold_2G00147610
rosa_samantha Rh2DG085900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 251
Acc36I ACCTGC 1 cut(s) 251
AccB7I CCANNNNNTGG 1 cut(s) 328
AclWI GGATC 1 cut(s) 95
AfaI GTAC 3 cut(s) 116, 221, 277
AfiI CCNNNNNNNGG 1 cut(s) 328
AgsI TTSAA 4 cut(s) 43, 68, 206, 250
AhlI ACTAGT 1 cut(s) 272
AluBI AGCT 1 cut(s) 269
AluI AGCT 1 cut(s) 269
AlwI GGATC 1 cut(s) 95
AoxI GGCC 1 cut(s) 94
AsuHPI GGTGA 1 cut(s) 275
BcuI ACTAGT 1 cut(s) 272
BfaI CTAG 1 cut(s) 273
BfuAI ACCTGC 1 cut(s) 251
BglII AGATCT 1 cut(s) 160
BmcAI AGTACT 1 cut(s) 277
BpmI CTGGAG 1 cut(s) 305
BsaBI GATNNNNATC 1 cut(s) 294
BsaWI WCCGGW 1 cut(s) 226
Bsc4I CCNNNNNNNGG 1 cut(s) 328
Bse1I ACTGG 2 cut(s) 104, 190
Bse3DI GCAATG 1 cut(s) 381
Bse8I GATNNNNATC 1 cut(s) 294
BseGI GGATG 2 cut(s) 31, 82
BseJI GATNNNNATC 1 cut(s) 294
BseLI CCNNNNNNNGG 1 cut(s) 328
BseMI GCAATG 1 cut(s) 381
BseNI ACTGG 2 cut(s) 104, 190
BshFI GGCC 1 cut(s) 96
BsiSI CCGG 1 cut(s) 227
BslFI GGGAC 1 cut(s) 196
BslI CCNNNNNNNGG 1 cut(s) 328
BsmFI GGGAC 1 cut(s) 196
BsnI GGCC 1 cut(s) 96
Bsp143I GATC 3 cut(s) 100, 160, 350
BspANI GGCC 1 cut(s) 96
BspCNI CTCAG 1 cut(s) 390
BspMI ACCTGC 1 cut(s) 251
BspPI GGATC 1 cut(s) 95
BsrDI GCAATG 1 cut(s) 381
BsrI ACTGG 2 cut(s) 104, 190
BssMI GATC 3 cut(s) 100, 160, 350
Bst4CI ACNGT 1 cut(s) 280
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 377
BstF5I GGATG 2 cut(s) 31, 82
BstKTI GATC 3 cut(s) 103, 163, 353
BstMBI GATC 3 cut(s) 100, 160, 350
BstMWI GCNNNNNNNGC 2 cut(s) 266, 322
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
BsuRI GGCC 1 cut(s) 96
BtsCI GGATG 2 cut(s) 31, 82
BtsIMutI CAGTG 1 cut(s) 111
BveI ACCTGC 1 cut(s) 251
Cac8I GCNNGC 1 cut(s) 6
Csp6I GTAC 3 cut(s) 115, 220, 276
CviAII CATG 1 cut(s) 118
CviJI RGCY 3 cut(s) 8, 96, 269
CviKI_1 RGCY 3 cut(s) 8, 96, 269
CviQI GTAC 3 cut(s) 115, 220, 276
DdeI CTNAG 1 cut(s) 377
DpnI GATC 3 cut(s) 102, 162, 352
DpnII GATC 3 cut(s) 100, 160, 350
FaeI CATG 1 cut(s) 121
FaiI YATR 6 cut(s) 119, 167, 180, 224, 245, 388
FaqI GGGAC 1 cut(s) 196
FatI CATG 1 cut(s) 117
FokI GGATG 2 cut(s) 38, 89
FspBI CTAG 1 cut(s) 273
GsuI CTGGAG 1 cut(s) 305
HaeIII GGCC 1 cut(s) 96
HapII CCGG 1 cut(s) 227
Hin1II CATG 1 cut(s) 121
HinfI GANTC 1 cut(s) 15
HpaII CCGG 1 cut(s) 227
HphI GGTGA 1 cut(s) 275
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 1 cut(s) 150
Hpy188III TCNNGA 1 cut(s) 308
Hpy8I GTNNAC 1 cut(s) 109
HpyAV CCTTC 1 cut(s) 148
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4V TGCA 2 cut(s) 260, 386
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 322
HpyF3I CTNAG 1 cut(s) 377
Hsp92II CATG 1 cut(s) 121
Kzo9I GATC 3 cut(s) 100, 160, 350
LpnPI CCDG 8 cut(s) 18, 117, 171, 240, 246, 269, 293, 335
MaeI CTAG 1 cut(s) 273
MalI GATC 3 cut(s) 102, 162, 352
MboI GATC 3 cut(s) 100, 160, 350
MboII GAAGA 3 cut(s) 43, 56, 170
MflI RGATCY 1 cut(s) 160
MluCI AATT 2 cut(s) 59, 201
MlyI GAGTC 1 cut(s) 24
MnlI CCTC 3 cut(s) 16, 107, 115
MspI CCGG 1 cut(s) 227
MwoI GCNNNNNNNGC 2 cut(s) 266, 322
NdeII GATC 3 cut(s) 100, 160, 350
NlaIII CATG 1 cut(s) 121
PaqCI CACCTGC 1 cut(s) 251
PflMI CCANNNNNTGG 1 cut(s) 328
PleI GAGTC 1 cut(s) 23
PpsI GAGTC 1 cut(s) 23
PsrI GAACNNNNNNTAC 2 cut(s) 192, 224
PsuI RGATCY 1 cut(s) 160
RsaI GTAC 3 cut(s) 116, 221, 277
RsaNI GTAC 3 cut(s) 115, 220, 276
Sau3AI GATC 3 cut(s) 100, 160, 350
ScaI AGTACT 1 cut(s) 277
SchI GAGTC 1 cut(s) 24
SetI ASST 4 cut(s) 41, 265, 271, 288
SpeI ACTAGT 1 cut(s) 272
Sse9I AATT 2 cut(s) 59, 201
SspMI CTAG 1 cut(s) 273
TaaI ACNGT 1 cut(s) 280
TaqI TCGA 1 cut(s) 99
TasI AATT 2 cut(s) 59, 201
TatI WGTACW 3 cut(s) 114, 219, 275
TscAI CASTG 1 cut(s) 111
TspDTI ATGAA 3 cut(s) 73, 167, 306
TspRI CASTG 1 cut(s) 111
Van91I CCANNNNNTGG 1 cut(s) 328
XspI CTAG 1 cut(s) 273
ZrmI AGTACT 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.