Rroxscaffold_2G00153380

Rap1-interacting factor 1 N terminal

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
90142155 .. 90142328
174 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00153380.1

Sequence Viewer

Length: 174 bp
ATGCCACACTCAAGTTTGAAAAGGAAGAGGGTGGAACTCACTGAGCATCAGAAGGAAGTGAGACAAGCACAACGAGGAAGAGGGAGGGATTGTGGCGGGCGCGGCATTATTATTCAGACTTACACAAGACTTGACTTTTCACAAGGGAACGAGGACTCACAGGGGAATGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

57

Amino Acids

6.54

Weight (kDa)

9.61

Isoelectric Point (pI)

40.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0023082)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002299.1_g000033
rosa_roxburghii Rroxscaffold_2G00153380
rosa_samantha Rh2AG030600 Rh2DG030600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 102
AciI CCGC 2 cut(s) 96, 102
AgsI TTSAA 1 cut(s) 19
Alw26I GTCTC 1 cut(s) 55
AspLEI GCGC 1 cut(s) 102
BcoDI GTCTC 1 cut(s) 55
BisI GCNGC 1 cut(s) 103
BlsI GCNGC 1 cut(s) 104
BmsI GCATC 1 cut(s) 55
BsaXI ACNNNNNCTCC 2 cut(s) 76, 106
BseMII CTCAG 1 cut(s) 33
Bsh1236I CGCG 1 cut(s) 102
BsmAI GTCTC 1 cut(s) 55
BspACI CCGC 2 cut(s) 96, 102
BspCNI CTCAG 1 cut(s) 34
BspFNI CGCG 1 cut(s) 102
Bst6I CTCTTC 2 cut(s) 20, 73
BstC8I GCNNGC 1 cut(s) 98
BstDEI CTNAG 1 cut(s) 42
BstFNI CGCG 1 cut(s) 102
BstHHI GCGC 1 cut(s) 102
BstMAI GTCTC 1 cut(s) 55
BstMWI GCNNNNNNNGC 1 cut(s) 102
BstUI CGCG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 39
Cac8I GCNNGC 1 cut(s) 98
CfoI GCGC 1 cut(s) 102
DdeI CTNAG 1 cut(s) 42
Eam1104I CTCTTC 2 cut(s) 20, 73
EarI CTCTTC 2 cut(s) 20, 73
FauI CCCGC 1 cut(s) 89
Fnu4HI GCNGC 1 cut(s) 103
Fsp4HI GCNGC 1 cut(s) 103
GlaI GCGC 1 cut(s) 101
GluI GCNGC 1 cut(s) 103
HhaI GCGC 1 cut(s) 102
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HinfI GANTC 1 cut(s) 155
Hpy188I TCNGA 2 cut(s) 51, 117
HpyAV CCTTC 1 cut(s) 46
HpyF10VI GCNNNNNNNGC 1 cut(s) 102
HpyF3I CTNAG 1 cut(s) 42
HspAI GCGC 1 cut(s) 100
LpnPI CCDG 1 cut(s) 146
LweI GCATC 1 cut(s) 55
MboII GAAGA 2 cut(s) 37, 90
MlyI GAGTC 1 cut(s) 149
MnlI CCTC 5 cut(s) 21, 68, 74, 78, 145
MvnI CGCG 1 cut(s) 102
MwoI GCNNNNNNNGC 1 cut(s) 102
PkrI GCNGC 1 cut(s) 104
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
SatI GCNGC 1 cut(s) 103
SchI GAGTC 1 cut(s) 149
SfaNI GCATC 1 cut(s) 55
SgeI CNNG 9 cut(s) 24, 77, 86, 109, 113, 138, 143, 155, 163
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
SsiI CCGC 2 cut(s) 96, 102
TauI GCSGC 1 cut(s) 105
TscAI CASTG 1 cut(s) 46
TspRI CASTG 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.