Rroxscaffold_3G00243380

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0023098
Physical Location & Seq
Forward (+)
35897670 .. 35898043
374 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00243380.1

Sequence Viewer

Length: 294 bp
ATGGATCACGCCAACTTTGCACACCAGTCGCTCGTCGTACTGGATGCTCAATCTGCAGCAGCAAAGAAATTGAGAAGCCTCTGTGATAATGTTTCTGATGAGCTAGAGGCAAGAAATACAACTGGGCTTGATTTAAGCACGAAGGAGAAAGCCCGGCTCTCCAGATCACCTTTTGTTTACTTGAGCCCTTTCACTACAGAAATTTGGGCCCATTTGAACTTCCTCGCAATGCGAAGCCCATCTCAAGTCACAGGGCCCAACCGCAAAGCTCAGCACTACAACTGCTTAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.85

Weight (kDa)

8.71

Isoelectric Point (pI)

58.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0023098)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003351.1_g000010
rosa_roxburghii Rroxscaffold_3G00243380 Rroxscaffold_3G00243420 Rroxscaffold_3G00243450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 262
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 201
AfaI GTAC 1 cut(s) 39
AgsI TTSAA 1 cut(s) 217
AluBI AGCT 2 cut(s) 103, 269
AluI AGCT 2 cut(s) 103, 269
AlwI GGATC 1 cut(s) 12
AoxI GGCC 2 cut(s) 207, 254
ApaI GGGCCC 2 cut(s) 211, 258
ApeKI GCWGC 2 cut(s) 56, 59
ApoI RAATTY 1 cut(s) 201
AspS9I GGNCC 4 cut(s) 207, 208, 254, 255
AsuC2I CCSGG 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 159
BaeGI GKGCMC 2 cut(s) 211, 258
BanII GRGCYC 3 cut(s) 188, 211, 258
BbvI GCAGC 2 cut(s) 68, 71
BccI CCATC 1 cut(s) 247
BcgI CGANNNNNNTGC 2 cut(s) 9, 43
BcnI CCSGG 1 cut(s) 154
BfaI CTAG 1 cut(s) 104
BfmI CTRYAG 2 cut(s) 54, 195
BisI GCNGC 2 cut(s) 57, 60
BlpI GCTNAGC 1 cut(s) 270
BlsI GCNGC 2 cut(s) 58, 61
Bme1390I CCNGG 1 cut(s) 154
BmgT120I GGNCC 4 cut(s) 207, 208, 254, 255
BmiI GGNNCC 2 cut(s) 209, 256
BmrFI CCNGG 1 cut(s) 154
BmrI ACTGGG 1 cut(s) 132
BmsI GCATC 1 cut(s) 34
BmuI ACTGGG 1 cut(s) 132
BpmI CTGGAG 1 cut(s) 145
Bpu1102I GCTNAGC 1 cut(s) 270
BpuEI CTTGAG 2 cut(s) 202, 228
BpuMI CCSGG 1 cut(s) 154
Bse1I ACTGG 3 cut(s) 25, 45, 127
Bse3DI GCAATG 1 cut(s) 234
BseGI GGATG 1 cut(s) 49
BseMI GCAATG 1 cut(s) 234
BseMII CTCAG 1 cut(s) 284
BseNI ACTGG 3 cut(s) 25, 45, 127
BseSI GKGCMC 2 cut(s) 211, 258
BseXI GCAGC 2 cut(s) 68, 71
BshFI GGCC 2 cut(s) 209, 256
BsiSI CCGG 1 cut(s) 154
BsnI GGCC 2 cut(s) 209, 256
Bsp120I GGGCCC 2 cut(s) 207, 254
Bsp1286I GDGCHC 3 cut(s) 188, 211, 258
Bsp143I GATC 2 cut(s) 4, 164
Bsp1720I GCTNAGC 1 cut(s) 270
BspACI CCGC 1 cut(s) 262
BspANI GGCC 2 cut(s) 209, 256
BspCNI CTCAG 1 cut(s) 283
BspLI GGNNCC 2 cut(s) 209, 256
BspMAI CTGCAG 1 cut(s) 58
BspPI GGATC 1 cut(s) 12
BsrDI GCAATG 1 cut(s) 234
BsrI ACTGG 3 cut(s) 25, 45, 127
BssMI GATC 2 cut(s) 4, 164
BstDEI CTNAG 1 cut(s) 270
BstF5I GGATG 1 cut(s) 49
BstKTI GATC 2 cut(s) 7, 167
BstMBI GATC 2 cut(s) 4, 164
BstMWI GCNNNNNNNGC 2 cut(s) 17, 53
BstSCI CCNGG 1 cut(s) 152
BstSFI CTRYAG 2 cut(s) 54, 195
BstSLI GKGCMC 2 cut(s) 211, 258
BstV1I GCAGC 2 cut(s) 68, 71
BsuRI GGCC 2 cut(s) 209, 256
BtsCI GGATG 1 cut(s) 49
Cfr13I GGNCC 4 cut(s) 207, 208, 254, 255
Csp6I GTAC 1 cut(s) 38
CviQI GTAC 1 cut(s) 38
DdeI CTNAG 1 cut(s) 270
DpnI GATC 2 cut(s) 6, 166
DpnII GATC 2 cut(s) 4, 164
Eco24I GRGCYC 3 cut(s) 188, 211, 258
EcoO109I RGGNCCY 1 cut(s) 254
EcoT38I GRGCYC 3 cut(s) 188, 211, 258
Fnu4HI GCNGC 2 cut(s) 57, 60
FokI GGATG 1 cut(s) 56
FriOI GRGCYC 3 cut(s) 188, 211, 258
Fsp4HI GCNGC 2 cut(s) 57, 60
FspBI CTAG 1 cut(s) 104
GluI GCNGC 2 cut(s) 57, 60
GsuI CTGGAG 1 cut(s) 145
HaeIII GGCC 2 cut(s) 209, 256
HapII CCGG 1 cut(s) 154
HpaII CCGG 1 cut(s) 154
HphI GGTGA 1 cut(s) 159
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 1 cut(s) 162
Hpy8I GTNNAC 1 cut(s) 178
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 1 cut(s) 136
HpyCH4V TGCA 2 cut(s) 20, 56
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 53
HpyF3I CTNAG 1 cut(s) 270
Kzo9I GATC 2 cut(s) 4, 164
LpnPI CCDG 6 cut(s) 26, 38, 108, 167, 175, 237
Lsp1109I GCAGC 2 cut(s) 68, 71
LweI GCATC 1 cut(s) 34
MaeI CTAG 1 cut(s) 104
MaeIII GTNAC 1 cut(s) 247
MalI GATC 2 cut(s) 6, 166
MboI GATC 2 cut(s) 4, 164
MhlI GDGCHC 3 cut(s) 188, 211, 258
MluCI AATT 3 cut(s) 68, 201, 289
MnlI CCTC 3 cut(s) 89, 100, 233
MseI TTAA 2 cut(s) 134, 287
MspI CCGG 1 cut(s) 154
MspR9I CCNGG 1 cut(s) 154
MwoI GCNNNNNNNGC 2 cut(s) 17, 53
NciI CCSGG 1 cut(s) 154
NdeII GATC 2 cut(s) 4, 164
NlaIV GGNNCC 2 cut(s) 209, 256
NmuCI GTSAC 1 cut(s) 247
PkrI GCNGC 2 cut(s) 58, 61
PspN4I GGNNCC 2 cut(s) 209, 256
PspOMI GGGCCC 2 cut(s) 207, 254
PspPI GGNCC 4 cut(s) 207, 208, 254, 255
PstI CTGCAG 1 cut(s) 58
RsaI GTAC 1 cut(s) 39
RsaNI GTAC 1 cut(s) 38
SaqAI TTAA 2 cut(s) 134, 287
SatI GCNGC 2 cut(s) 57, 60
Sau3AI GATC 2 cut(s) 4, 164
Sau96I GGNCC 4 cut(s) 207, 208, 254, 255
ScrFI CCNGG 1 cut(s) 154
SduI GDGCHC 3 cut(s) 188, 211, 258
SetI ASST 3 cut(s) 105, 172, 271
SfaNI GCATC 1 cut(s) 34
SfcI CTRYAG 2 cut(s) 54, 195
SmlI CTYRAG 2 cut(s) 181, 243
SmoI CTYRAG 2 cut(s) 181, 243
Sse9I AATT 3 cut(s) 68, 201, 289
SsiI CCGC 1 cut(s) 262
SspMI CTAG 1 cut(s) 104
StyD4I CCNGG 1 cut(s) 152
TasI AATT 3 cut(s) 68, 201, 289
Tru1I TTAA 2 cut(s) 134, 287
Tru9I TTAA 2 cut(s) 134, 287
TseFI GTSAC 1 cut(s) 247
TseI GCWGC 2 cut(s) 56, 59
Tsp45I GTSAC 1 cut(s) 247
XapI RAATTY 1 cut(s) 201
XspI CTAG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.