Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0025577

Physical Location & Seq

Genomic Coordinates Forward (+)

52093904 .. 52094143

Gene Structure 240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00257800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGTGTGGGTCTCGAGGTGGGAGGAAAGGAGGAGAAATTGTGCACTTTGGCTTGCCAAAAAGTCATGGAGAACACCGGAGAAGATCGATATGGGTCTCGATGCGGGTGTTGACGCGGAGGCAAGGCGGTATCCGATGGTGGGGTGTGTGAGGAATTCGGATTCGGATGGGGTGTTTCGGCTTTACGAGAAGTTGAAGGAGAAGTTGGGAGGGGAGGTGGAGGATGGAGTTGTGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006349 GO:0006725 GO:0006807 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0010468 GO:0016070 GO:0016787 GO:0016788 GO:0017076 GO:0019222 GO:0022414 GO:0030554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0035639 GO:0036094 GO:0040029 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0071514 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

79

Amino Acids

9.14

Weight (kDa)

7.76

Isoelectric Point (pI)

49.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025577)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004125.1_g000013 Rmu_sc0009764.1_g000001
rosa_roxburghii	Rroxscaffold_3G00257800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	116
AciI	CCGC	3 cut(s)	104, 116, 127
AcsI	RAATTY	1 cut(s)	154
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgsI	TTSAA	1 cut(s)	196
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
Alw21I	GWGCWC	1 cut(s)	46
Alw26I	GTCTC	2 cut(s)	16, 101
Alw44I	GTGCAC	1 cut(s)	42
Ama87I	CYCGRG	1 cut(s)	13
ApaLI	GTGCAC	1 cut(s)	42
ApoI	RAATTY	1 cut(s)	154
AvaI	CYCGRG	1 cut(s)	13
BaeGI	GKGCMC	1 cut(s)	46
Bbv12I	GWGCWC	1 cut(s)	46
BccI	CCATC	3 cut(s)	130, 161, 218
BciVI	GTATCC	1 cut(s)	141
BcoDI	GTCTC	2 cut(s)	16, 101
BfuI	GTATCC	1 cut(s)	141
BmeT110I	CYCGRG	1 cut(s)	13
BmsI	GCATC	1 cut(s)	91
Bsa29I	ATCGAT	1 cut(s)	87
BsaI	GGTCTC	2 cut(s)	16, 101
BsaWI	WCCGGW	1 cut(s)	76
BsaXI	ACNNNNNCTCC	5 cut(s)	25, 55, 201, 219, 231
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
BseCI	ATCGAT	1 cut(s)	87
BseGI	GGATG	2 cut(s)	172, 229
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseRI	GAGGAG	1 cut(s)	46
BseSI	GKGCMC	1 cut(s)	46
Bsh1236I	CGCG	1 cut(s)	116
BshVI	ATCGAT	1 cut(s)	87
BsiHKAI	GWGCWC	1 cut(s)	46
BsiHKCI	CYCGRG	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	2 cut(s)	16, 101
Bso31I	GGTCTC	2 cut(s)	16, 101
BsoBI	CYCGRG	1 cut(s)	13
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	1 cut(s)	84
BspACI	CCGC	3 cut(s)	104, 116, 127
BspDI	ATCGAT	1 cut(s)	87
BspFNI	CGCG	1 cut(s)	116
BspTNI	GGTCTC	2 cut(s)	16, 101
BssMI	GATC	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	54
BstF5I	GGATG	2 cut(s)	172, 229
BstFNI	CGCG	1 cut(s)	116
BstKTI	GATC	1 cut(s)	87
BstMAI	GTCTC	2 cut(s)	16, 101
BstMBI	GATC	1 cut(s)	84
BstSLI	GKGCMC	1 cut(s)	46
BstUI	CGCG	1 cut(s)	116
Bsu15I	ATCGAT	1 cut(s)	87
BsuI	GTATCC	1 cut(s)	141
BsuTUI	ATCGAT	1 cut(s)	87
BtsCI	GGATG	2 cut(s)	172, 229
Cac8I	GCNNGC	1 cut(s)	54
ClaI	ATCGAT	1 cut(s)	87
CseI	GACGC	1 cut(s)	122
CviAII	CATG	1 cut(s)	66
CviJI	RGCY	2 cut(s)	52, 181
CviKI_1	RGCY	2 cut(s)	52, 181
DpnI	GATC	1 cut(s)	86
DpnII	GATC	1 cut(s)	84
Eco31I	GGTCTC	2 cut(s)	16, 101
Eco88I	CYCGRG	1 cut(s)	13
EcoRI	GAATTC	1 cut(s)	154
FaeI	CATG	1 cut(s)	69
FaiI	YATR	2 cut(s)	67, 92
FatI	CATG	1 cut(s)	65
FauI	CCCGC	1 cut(s)	97
FokI	GGATG	2 cut(s)	179, 236
HapII	CCGG	1 cut(s)	77
HgaI	GACGC	1 cut(s)	122
Hin1II	CATG	1 cut(s)	69
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HinfI	GANTC	1 cut(s)	161
HpaII	CCGG	1 cut(s)	77
Hpy166II	GTNNAC	2 cut(s)	44, 112
Hpy188I	TCNGA	3 cut(s)	135, 160, 166
Hpy188III	TCNNGA	2 cut(s)	13, 98
Hpy8I	GTNNAC	2 cut(s)	44, 112
HpyAV	CCTTC	1 cut(s)	190
HpyCH4V	TGCA	1 cut(s)	44
Hsp92II	CATG	1 cut(s)	69
Kzo9I	GATC	1 cut(s)	84
LpnPI	CCDG	1 cut(s)	90
LweI	GCATC	1 cut(s)	91
MalI	GATC	1 cut(s)	86
MboI	GATC	1 cut(s)	84
MboII	GAAGA	1 cut(s)	94
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	2 cut(s)	37, 154
MnlI	CCTC	8 cut(s)	9, 16, 24, 112, 144, 203, 208, 214
MspI	CCGG	1 cut(s)	77
MvnI	CGCG	1 cut(s)	116
NdeII	GATC	1 cut(s)	84
NlaIII	CATG	1 cut(s)	69
PaeR7I	CTCGAG	1 cut(s)	13
PfeI	GAWTC	1 cut(s)	161
Sau3AI	GATC	1 cut(s)	84
SduI	GDGCHC	1 cut(s)	46
SetI	ASST	2 cut(s)	20, 219
SfaNI	GCATC	1 cut(s)	91
Sfr274I	CTCGAG	1 cut(s)	13
SlaI	CTCGAG	1 cut(s)	13
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
Sse9I	AATT	2 cut(s)	37, 154
SsiI	CCGC	3 cut(s)	104, 116, 127
TaqI	TCGA	3 cut(s)	14, 87, 99
TasI	AATT	2 cut(s)	37, 154
TfiI	GAWTC	1 cut(s)	161
VneI	GTGCAC	1 cut(s)	42
XapI	RAATTY	1 cut(s)	154
XhoI	CTCGAG	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.