Rroxscaffold_3G00266160

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0032038
Physical Location & Seq
Reverse (-)
59534401 .. 59535133
733 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00266160.1

Sequence Viewer

Length: 282 bp
ATGCAACTGCGAATTGTGAAAGTAACCGGATTATCTGGTAATAAAGCTCAAGCGAATTTCATCAGATTTCTTCTTTCAAGTACTTCAACTTCGCTCGAGAGGTTGACTCTTCAACCTGCAGCTTCTGCCAAAGAACTTTGGGAATTATTTAAATTGTTAGGCGAGTTCATCAACCGCGTCTCAGTACCTGCAGACTTGGAGTTCTTGGACCCATCAAATAGTGTGCAGGAGTCTGATGACTCGTCGTCTTCTTCCGATTCCGAAGATGATATTGGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

93

Amino Acids

10.2

Weight (kDa)

4.4

Isoelectric Point (pI)

42.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0032038)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_3G00266160
rosa_samantha Rh7CG100500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 124, 196
AccII CGCG 1 cut(s) 177
AciI CCGC 1 cut(s) 175
AcsI RAATTY 1 cut(s) 55
AfaI GTAC 2 cut(s) 82, 186
AgsI TTSAA 3 cut(s) 78, 87, 113
AhdI GACNNNNNGTC 1 cut(s) 244
AjuI GAANNNNNNNTTGG 1 cut(s) 255
AluBI AGCT 2 cut(s) 47, 122
AluI AGCT 2 cut(s) 47, 122
Alw26I GTCTC 1 cut(s) 184
AlwNI CAGNNNCTG 2 cut(s) 125, 188
Ama87I CYCGRG 1 cut(s) 95
ApeKI GCWGC 1 cut(s) 119
ApoI RAATTY 1 cut(s) 55
AspS9I GGNCC 1 cut(s) 208
AvaI CYCGRG 1 cut(s) 95
AvaII GGWCC 1 cut(s) 208
BarI GAAGNNNNNNTAC 2 cut(s) 73, 105
BbsI GAAGAC 1 cut(s) 240
BbvI GCAGC 1 cut(s) 131
BccI CCATC 1 cut(s) 220
BcoDI GTCTC 1 cut(s) 184
BfmI CTRYAG 2 cut(s) 117, 189
BfuAI ACCTGC 2 cut(s) 124, 196
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
BmcAI AGTACT 1 cut(s) 82
Bme18I GGWCC 1 cut(s) 208
BmeRI GACNNNNNGTC 1 cut(s) 244
BmeT110I CYCGRG 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 1 cut(s) 210
BpiI GAAGAC 1 cut(s) 240
BplI GAGNNNNNCTC 2 cut(s) 91, 123
BpuEI CTTGAG 1 cut(s) 33
BsaWI WCCGGW 1 cut(s) 26
BseMII CTCAG 1 cut(s) 195
BseXI GCAGC 1 cut(s) 131
BsgI GTGCAG 1 cut(s) 245
Bsh1236I CGCG 1 cut(s) 177
BsiHKCI CYCGRG 1 cut(s) 95
BsiSI CCGG 1 cut(s) 27
BsmAI GTCTC 1 cut(s) 184
BsmBI CGTCTC 1 cut(s) 184
BsoBI CYCGRG 1 cut(s) 95
BspACI CCGC 1 cut(s) 175
BspCNI CTCAG 1 cut(s) 194
BspFNI CGCG 1 cut(s) 177
BspLI GGNNCC 1 cut(s) 210
BspMAI CTGCAG 2 cut(s) 121, 193
BspMI ACCTGC 2 cut(s) 124, 196
Bst6I CTCTTC 1 cut(s) 114
BstAPI GCANNNNNTGC 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 181
BstFNI CGCG 1 cut(s) 177
BstMAI GTCTC 1 cut(s) 184
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstSFI CTRYAG 2 cut(s) 117, 189
BstUI CGCG 1 cut(s) 177
BstV1I GCAGC 1 cut(s) 131
BstV2I GAAGAC 1 cut(s) 240
BveI ACCTGC 2 cut(s) 124, 196
CaiI CAGNNNCTG 2 cut(s) 125, 188
Cfr13I GGNCC 1 cut(s) 208
CseI GACGC 1 cut(s) 166
Csp6I GTAC 2 cut(s) 81, 185
CviJI RGCY 2 cut(s) 47, 122
CviKI_1 RGCY 2 cut(s) 47, 122
CviQI GTAC 2 cut(s) 81, 185
DdeI CTNAG 1 cut(s) 181
DraI TTTAAA 1 cut(s) 151
DriI GACNNNNNGTC 1 cut(s) 244
Eam1104I CTCTTC 1 cut(s) 114
Eam1105I GACNNNNNGTC 1 cut(s) 244
EarI CTCTTC 1 cut(s) 114
Eco47I GGWCC 1 cut(s) 208
Eco88I CYCGRG 1 cut(s) 95
Esp3I CGTCTC 1 cut(s) 184
Fnu4HI GCNGC 1 cut(s) 120
Fsp4HI GCNGC 1 cut(s) 120
GluI GCNGC 1 cut(s) 120
HapII CCGG 1 cut(s) 27
HgaI GACGC 1 cut(s) 166
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
HinfI GANTC 4 cut(s) 106, 230, 239, 257
HpaII CCGG 1 cut(s) 27
Hpy166II GTNNAC 1 cut(s) 105
Hpy188I TCNGA 4 cut(s) 65, 235, 256, 262
Hpy188III TCNNGA 1 cut(s) 97
Hpy8I GTNNAC 1 cut(s) 105
Hpy99I CGWCG 1 cut(s) 247
HpyCH4V TGCA 4 cut(s) 4, 119, 191, 226
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
HpyF3I CTNAG 1 cut(s) 181
LpnPI CCDG 5 cut(s) 21, 40, 129, 201, 212
Lsp1109I GCAGC 1 cut(s) 131
MaeIII GTNAC 1 cut(s) 22
MboII GAAGA 5 cut(s) 62, 101, 240, 243, 275
MluCI AATT 4 cut(s) 12, 55, 143, 152
MlyI GAGTC 3 cut(s) 100, 233, 239
MnlI CCTC 1 cut(s) 93
MseI TTAA 1 cut(s) 150
MspI CCGG 1 cut(s) 27
MvnI CGCG 1 cut(s) 177
MwoI GCNNNNNNNGC 1 cut(s) 125
NlaIV GGNNCC 1 cut(s) 210
PaeR7I CTCGAG 1 cut(s) 95
PfeI GAWTC 1 cut(s) 257
PkrI GCNGC 1 cut(s) 121
PleI GAGTC 3 cut(s) 100, 233, 238
PpsI GAGTC 3 cut(s) 100, 233, 238
PspN4I GGNNCC 1 cut(s) 210
PspPI GGNCC 1 cut(s) 208
PstI CTGCAG 2 cut(s) 121, 193
PstNI CAGNNNCTG 2 cut(s) 125, 188
RsaI GTAC 2 cut(s) 82, 186
RsaNI GTAC 2 cut(s) 81, 185
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 1 cut(s) 120
Sau96I GGNCC 1 cut(s) 208
ScaI AGTACT 1 cut(s) 82
SchI GAGTC 3 cut(s) 100, 233, 239
SetI ASST 5 cut(s) 49, 104, 118, 124, 190
SfcI CTRYAG 2 cut(s) 117, 189
Sfr274I CTCGAG 1 cut(s) 95
SinI GGWCC 1 cut(s) 208
SlaI CTCGAG 1 cut(s) 95
SmiI ATTTAAAT 1 cut(s) 151
SmlI CTYRAG 2 cut(s) 48, 95
SmoI CTYRAG 2 cut(s) 48, 95
Sse9I AATT 4 cut(s) 12, 55, 143, 152
SsiI CCGC 1 cut(s) 175
SwaI ATTTAAAT 1 cut(s) 151
TaqI TCGA 1 cut(s) 96
TasI AATT 4 cut(s) 12, 55, 143, 152
TatI WGTACW 1 cut(s) 80
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TseI GCWGC 1 cut(s) 119
TspDTI ATGAA 2 cut(s) 49, 157
VpaK11BI GGWCC 1 cut(s) 208
XapI RAATTY 1 cut(s) 55
XhoI CTCGAG 1 cut(s) 95
ZrmI AGTACT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.