Rroxscaffold_3G00274030

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
65757644 .. 65757862
219 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00274030.1

Sequence Viewer

Length: 219 bp
ATGGGGAGACTATGGAGGGAGATAGGCAGTGTGAAATTTGATGATGGTGAATATTGGTTAGTGTTTTGGGCAGTTTTGGTCACAATGTCTATTATCTCAGCCATAGTTTTTTCTTGTGCTGATGGTATGTCCAAAGAGAGAAGCACTACAACCACCGACACAGACCTCTATGGCGGCTCAGCTTGTGCTGCTGGGTGTGGTGCAGCTTGTGGTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

7.61

Weight (kDa)

4.46

Isoelectric Point (pI)

41.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017555)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 174
AcsI RAATTY 1 cut(s) 35
AluBI AGCT 2 cut(s) 182, 206
AluI AGCT 2 cut(s) 182, 206
ApeKI GCWGC 2 cut(s) 188, 203
ApoI RAATTY 1 cut(s) 35
AsuHPI GGTGA 1 cut(s) 59
BbvI GCAGC 2 cut(s) 175, 215
BccI CCATC 2 cut(s) 38, 116
BisI GCNGC 3 cut(s) 175, 189, 204
BlpI GCTNAGC 1 cut(s) 178
BlsI GCNGC 3 cut(s) 176, 190, 205
Bpu1102I GCTNAGC 1 cut(s) 178
BseMII CTCAG 2 cut(s) 111, 192
BseXI GCAGC 2 cut(s) 175, 215
BseYI CCCAGC 1 cut(s) 191
Bsp1720I GCTNAGC 1 cut(s) 178
BspACI CCGC 1 cut(s) 174
BspCNI CTCAG 2 cut(s) 110, 191
BstDEI CTNAG 2 cut(s) 97, 178
BstMWI GCNNNNNNNGC 2 cut(s) 188, 212
BstV1I GCAGC 2 cut(s) 175, 215
BtsI GCAGTG 1 cut(s) 34
BtsIMutI CAGTG 1 cut(s) 34
CviAII CATG 1 cut(s) 216
CviJI RGCY 4 cut(s) 101, 177, 182, 206
CviKI_1 RGCY 4 cut(s) 101, 177, 182, 206
DdeI CTNAG 2 cut(s) 97, 178
FaeI CATG 1 cut(s) 219
FaiI YATR 5 cut(s) 13, 104, 128, 171, 217
FatI CATG 1 cut(s) 215
Fnu4HI GCNGC 3 cut(s) 175, 189, 204
Fsp4HI GCNGC 3 cut(s) 175, 189, 204
GluI GCNGC 3 cut(s) 175, 189, 204
GsaI CCCAGC 1 cut(s) 195
Hin1II CATG 1 cut(s) 219
HphI GGTGA 1 cut(s) 59
HpyCH4V TGCA 2 cut(s) 203, 215
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 212
HpyF3I CTNAG 2 cut(s) 97, 178
Hsp92II CATG 1 cut(s) 219
LpnPI CCDG 1 cut(s) 177
Lsp1109I GCAGC 2 cut(s) 175, 215
MaeIII GTNAC 1 cut(s) 79
MluCI AATT 1 cut(s) 35
MnlI CCTC 2 cut(s) 9, 176
MwoI GCNNNNNNNGC 2 cut(s) 188, 212
NlaIII CATG 1 cut(s) 219
NmuCI GTSAC 1 cut(s) 79
PkrI GCNGC 3 cut(s) 176, 190, 205
PspFI CCCAGC 1 cut(s) 191
SatI GCNGC 3 cut(s) 175, 189, 204
SetI ASST 3 cut(s) 168, 184, 208
SgeI CNNG 3 cut(s) 126, 195, 204
Sse9I AATT 1 cut(s) 35
SsiI CCGC 1 cut(s) 174
SspI AATATT 1 cut(s) 53
TasI AATT 1 cut(s) 35
TauI GCSGC 1 cut(s) 177
TscAI CASTG 1 cut(s) 34
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 2 cut(s) 188, 203
Tsp45I GTSAC 1 cut(s) 79
TspRI CASTG 1 cut(s) 34
XapI RAATTY 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.