Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0030521

Physical Location & Seq

Genomic Coordinates Reverse (-)

22668837 .. 22671626

Gene Structure 2790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00302280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGGTGTTGCTGGATTTAGCCTTTACATCTAACTTTAAAAGAGTTACTGTTATTTTCCTTCTTGTAGTATCAGTTGAAGCTTGTAGGAGAAACATCAAGTTCAATGGTTCAGTTGCATGTTCAAAGGTGGAATCACATCTTGTTGACGCTCGTGTGCATATGCTCACCAACCAAAAAGAGTGTGATGTGTGTAATGGTTCAGGGAAGGGCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0002940 GO:0003674 GO:0003824 GO:0004809 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008175 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016423 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRM

Protein Analysis

71

Amino Acids

7.8

Weight (kDa)

8.86

Isoelectric Point (pI)

33.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030521)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0204951
rosa_roxburghii	Rroxscaffold_4G00302280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	3 cut(s)	77, 103, 123
AluBI	AGCT	1 cut(s)	80
AluI	AGCT	1 cut(s)	80
AsuHPI	GGTGA	1 cut(s)	157
BaeGI	GKGCMC	1 cut(s)	212
BauI	CACGAG	1 cut(s)	150
BseSI	GKGCMC	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	212
BssSI	CACGAG	1 cut(s)	150
Bst2BI	CACGAG	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	49
BstNSI	RCATGY	1 cut(s)	120
BstSLI	GKGCMC	1 cut(s)	212
CseI	GACGC	1 cut(s)	155
CviAII	CATG	1 cut(s)	117
CviJI	RGCY	2 cut(s)	20, 80
CviKI_1	RGCY	2 cut(s)	20, 80
DraI	TTTAAA	1 cut(s)	37
FaeI	CATG	1 cut(s)	120
FaiI	YATR	4 cut(s)	118, 159, 161, 214
FatI	CATG	1 cut(s)	116
FauNDI	CATATG	1 cut(s)	159
HgaI	GACGC	1 cut(s)	155
Hin1II	CATG	1 cut(s)	120
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HindIII	AAGCTT	1 cut(s)	78
HinfI	GANTC	1 cut(s)	131
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	1 cut(s)	145
Hpy8I	GTNNAC	1 cut(s)	145
HpyAV	CCTTC	2 cut(s)	68, 199
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	2 cut(s)	116, 157
Hsp92II	CATG	1 cut(s)	120
LpnPI	CCDG	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	43
MhlI	GDGCHC	1 cut(s)	212
MseI	TTAA	1 cut(s)	36
NdeI	CATATG	1 cut(s)	159
NlaIII	CATG	1 cut(s)	120
NspI	RCATGY	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	36
SduI	GDGCHC	1 cut(s)	212
SetI	ASST	2 cut(s)	82, 129
SgeI	CNNG	8 cut(s)	23, 74, 93, 109, 129, 152, 162, 164
TaaI	ACNGT	1 cut(s)	49
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
XceI	RCATGY	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.