Rroxscaffold_4G00306330

Protein LST8 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0031168
Physical Location & Seq
Forward (+)
27127278 .. 27129170
1893 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00306330.1

Sequence Viewer

Length: 489 bp
ATGTCACCTATTGATGAGAAAATCCCAGTCATCTTCTCCCACATTTTCAGATATCCGGCCACCGCCGCTTTCGACCACATTGTCAAGATATGGAATGTTGATGGTTTCACATTAGAGAAAGCTCTAGAAGAGGTTGATAAGACTGTGCGCATATGTGGAGGTGAAGGGGAAAGCGGAGATGATCTCATAATATATGGGGAAGAAGGAGGAGATGGAGATCTTGATGACTGGATAGCAGGTCGACGAGGATGTATTGATATCAATTTGTGGAAGGTCTGTGTCTTTGAATGCTTTCTAGGAGATAACCGCAATGGGCTTGAAGGTGCTGTAGGTTTAACTAAAGGCTTTATAACCTTAGAAACCTTTTCAGTTGATGATCGCAATGGACATGCAGGTGTTGTAGGTTTATCTAAAGGCTTTACAAGCCTAGAAACCTTTTCAGCAGATGTTCGCAAGTGGTTTGGTGGAAGTGCTGATGTTCGCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001932 GO:0001934 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005776 GO:0006935 GO:0006950 GO:0007154 GO:0007165 GO:0007190 GO:0008064 GO:0008150 GO:0009267 GO:0009605 GO:0009893 GO:0009987 GO:0009991 GO:0010562 GO:0010604 GO:0010638 GO:0016043 GO:0019220 GO:0019222 GO:0023052 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030838 GO:0031152 GO:0031252 GO:0031323 GO:0031325 GO:0031334 GO:0031399 GO:0031401 GO:0031667 GO:0031668 GO:0031669 GO:0031929 GO:0031931 GO:0031932 GO:0032147 GO:0032148 GO:0032268 GO:0032270 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0033554 GO:0033674 GO:0035556 GO:0038201 GO:0040011 GO:0042221 GO:0042325 GO:0042327 GO:0042330 GO:0042594 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0043327 GO:0043519 GO:0043520 GO:0043549 GO:0044087 GO:0044089 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0045806 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0050764 GO:0050765 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051493 GO:0051495 GO:0051703 GO:0051704 GO:0051716 GO:0060255 GO:0060627 GO:0065007 GO:0065008 GO:0065009 GO:0071496 GO:0071840 GO:0080090 GO:0090066 GO:0090702 GO:0098630 GO:0098743 GO:0099120 GO:0110053 GO:1902903 GO:1902905
KEGG Pathways
Metabolic & Signaling
ko04136 ko04138 ko04140 ko04150 ko04151 ko04714 map04136 map04138 map04140 map04150 map04151 map04714
Pfam Domains
Protein Families
WD40

Protein Analysis

162

Amino Acids

17.71

Weight (kDa)

4.56

Isoelectric Point (pI)

29.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031168)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001909.1_g000014
rosa_roxburghii Rroxscaffold_4G00306330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 350
AarI CACCTGC 1 cut(s) 383
AasI GACNNNNNNGTC 1 cut(s) 80
Acc16I TGCGCA 1 cut(s) 149
Acc36I ACCTGC 2 cut(s) 227, 383
AccI GTMKAC 1 cut(s) 241
AciI CCGC 4 cut(s) 63, 66, 174, 307
AcoI YGGCCR 1 cut(s) 57
AgsI TTSAA 2 cut(s) 287, 320
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
AoxI GGCC 1 cut(s) 57
Asp700I GAANNNNTTC 1 cut(s) 291
AspLEI GCGC 1 cut(s) 150
AsuHPI GGTGA 1 cut(s) 173
BccI CCATC 2 cut(s) 95, 206
BfaI CTAG 3 cut(s) 125, 296, 428
BfmI CTRYAG 1 cut(s) 327
BfuAI ACCTGC 2 cut(s) 227, 383
BglII AGATCT 1 cut(s) 217
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
BmrI ACTGGG 1 cut(s) 20
BmuI ACTGGG 1 cut(s) 20
BplI GAGNNNNNCTC 2 cut(s) 168, 200
BsaBI GATNNNNATC 1 cut(s) 216
Bse1I ACTGG 2 cut(s) 26, 233
Bse3DI GCAATG 2 cut(s) 316, 388
Bse8I GATNNNNATC 1 cut(s) 216
BseGI GGATG 1 cut(s) 254
BseJI GATNNNNATC 1 cut(s) 216
BseMI GCAATG 2 cut(s) 316, 388
BseNI ACTGG 2 cut(s) 26, 233
BseRI GAGGAG 1 cut(s) 222
BshFI GGCC 1 cut(s) 59
BsiSI CCGG 1 cut(s) 56
BsmI GAATGC 1 cut(s) 293
BsnI GGCC 1 cut(s) 59
Bsp143I GATC 3 cut(s) 181, 217, 376
BspACI CCGC 4 cut(s) 63, 66, 174, 307
BspANI GGCC 1 cut(s) 59
BspMI ACCTGC 2 cut(s) 227, 383
BsrDI GCAATG 2 cut(s) 316, 388
BsrI ACTGG 2 cut(s) 26, 233
BssMI GATC 3 cut(s) 181, 217, 376
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 1 cut(s) 123
BstDEI CTNAG 1 cut(s) 355
BstF5I GGATG 1 cut(s) 254
BstHHI GCGC 1 cut(s) 150
BstKTI GATC 3 cut(s) 184, 220, 379
BstMBI GATC 3 cut(s) 181, 217, 376
BstMWI GCNNNNNNNGC 2 cut(s) 65, 423
BstNSI RCATGY 1 cut(s) 392
BstSFI CTRYAG 1 cut(s) 327
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
BsuRI GGCC 1 cut(s) 59
BtsCI GGATG 1 cut(s) 254
BveI ACCTGC 2 cut(s) 227, 383
CfoI GCGC 1 cut(s) 150
CviAII CATG 1 cut(s) 389
CviJI RGCY 6 cut(s) 59, 122, 316, 345, 417, 426
CviKI_1 RGCY 6 cut(s) 59, 122, 316, 345, 417, 426
DdeI CTNAG 1 cut(s) 355
DpnI GATC 3 cut(s) 183, 219, 378
DpnII GATC 3 cut(s) 181, 217, 376
DrdI GACNNNNNNGTC 1 cut(s) 80
DseDI GACNNNNNNGTC 1 cut(s) 80
EaeI YGGCCR 1 cut(s) 57
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Eco32I GATATC 2 cut(s) 53, 259
EcoRV GATATC 2 cut(s) 53, 259
FaeI CATG 1 cut(s) 392
FaiI YATR 8 cut(s) 91, 152, 154, 188, 193, 195, 350, 390
FatI CATG 1 cut(s) 388
FauNDI CATATG 1 cut(s) 152
FblI GTMKAC 1 cut(s) 241
Fnu4HI GCNGC 1 cut(s) 66
FokI GGATG 1 cut(s) 261
Fsp4HI GCNGC 1 cut(s) 66
FspAI RTGCGCAY 1 cut(s) 149
FspBI CTAG 3 cut(s) 125, 296, 428
FspI TGCGCA 1 cut(s) 149
GlaI GCGC 1 cut(s) 149
GluI GCNGC 1 cut(s) 66
HaeIII GGCC 1 cut(s) 59
HapII CCGG 1 cut(s) 56
HhaI GCGC 1 cut(s) 150
Hin1II CATG 1 cut(s) 392
Hin6I GCGC 1 cut(s) 148
HinP1I GCGC 1 cut(s) 148
HincII GTYRAC 1 cut(s) 242
HindII GTYRAC 1 cut(s) 242
HpaII CCGG 1 cut(s) 56
HphI GGTGA 1 cut(s) 173
Hpy166II GTNNAC 1 cut(s) 242
Hpy188I TCNGA 1 cut(s) 50
Hpy188III TCNNGA 3 cut(s) 85, 125, 221
Hpy8I GTNNAC 1 cut(s) 242
Hpy99I CGWCG 1 cut(s) 246
HpyAV CCTTC 4 cut(s) 158, 197, 265, 314
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4V TGCA 1 cut(s) 392
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 423
HpyF3I CTNAG 1 cut(s) 355
Hsp92II CATG 1 cut(s) 392
HspAI GCGC 1 cut(s) 148
Kzo9I GATC 3 cut(s) 181, 217, 376
LpnPI CCDG 5 cut(s) 39, 69, 214, 222, 378
MaeI CTAG 3 cut(s) 125, 296, 428
MaeIII GTNAC 1 cut(s) 3
MalI GATC 3 cut(s) 183, 219, 378
MboI GATC 3 cut(s) 181, 217, 376
MboII GAAGA 3 cut(s) 25, 140, 212
MfeI CAATTG 1 cut(s) 484
MflI RGATCY 1 cut(s) 217
MluCI AATT 2 cut(s) 262, 484
MnlI CCTC 4 cut(s) 124, 152, 200, 239
MroXI GAANNNNTTC 1 cut(s) 291
MseI TTAA 1 cut(s) 335
MslI CAYNNNNRTG 1 cut(s) 393
MspI CCGG 1 cut(s) 56
MunI CAATTG 1 cut(s) 484
Mva1269I GAATGC 1 cut(s) 293
MwoI GCNNNNNNNGC 2 cut(s) 65, 423
NdeI CATATG 1 cut(s) 152
NdeII GATC 3 cut(s) 181, 217, 376
NlaIII CATG 1 cut(s) 392
NmuCI GTSAC 1 cut(s) 3
NsbI TGCGCA 1 cut(s) 149
NspI RCATGY 1 cut(s) 392
PaqCI CACCTGC 1 cut(s) 383
PctI GAATGC 1 cut(s) 293
PdmI GAANNNNTTC 1 cut(s) 291
PkrI GCNGC 1 cut(s) 67
PsiI TTATAA 1 cut(s) 350
PsuI RGATCY 1 cut(s) 217
RseI CAYNNNNRTG 1 cut(s) 393
SalI GTCGAC 1 cut(s) 240
SaqAI TTAA 1 cut(s) 335
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 3 cut(s) 181, 217, 376
SfcI CTRYAG 1 cut(s) 327
SmiMI CAYNNNNRTG 1 cut(s) 393
Sse9I AATT 2 cut(s) 262, 484
SsiI CCGC 4 cut(s) 63, 66, 174, 307
SspMI CTAG 3 cut(s) 125, 296, 428
TaaI ACNGT 1 cut(s) 145
TaqI TCGA 2 cut(s) 72, 241
TasI AATT 2 cut(s) 262, 484
TauI GCSGC 1 cut(s) 68
Tru1I TTAA 1 cut(s) 335
Tru9I TTAA 1 cut(s) 335
TseFI GTSAC 1 cut(s) 3
Tsp45I GTSAC 1 cut(s) 3
XbaI TCTAGA 1 cut(s) 124
XceI RCATGY 1 cut(s) 392
XmiI GTMKAC 1 cut(s) 241
XmnI GAANNNNTTC 1 cut(s) 291
XspI CTAG 3 cut(s) 125, 296, 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.