Rroxscaffold_4G00310380

membrane protein At4g09580-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
32335130 .. 32336677
1548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00310380.1

Sequence Viewer

Length: 159 bp
ATGCTTTTCCCGAGGATGACTCCAACTTTGCCAAACCTTTTCATCAACTTGGCATCTCCCATTGTCGACATACCCTTTCACATTTTCTTTCTTGCAACTTTGATGGATGTCGACGGAAGGGGATTCGAAAGGTTGGTGGTGGAAATACAACTACAATGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

52

Amino Acids

5.99

Weight (kDa)

4.83

Isoelectric Point (pI)

36.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0029006)

Species Orthologous Gene IDs
prunus_persica Prupe.6G151100_v2.0.a1
rosa_roxburghii Rroxscaffold_4G00310380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 66, 111
Ama87I CYCGRG 1 cut(s) 10
ArsI GACNNNNNNTTYG 2 cut(s) 10, 42
AsuII TTCGAA 1 cut(s) 126
AvaI CYCGRG 1 cut(s) 10
BccI CCATC 1 cut(s) 97
BmeT110I CYCGRG 1 cut(s) 10
BmsI GCATC 1 cut(s) 62
BplI GAGNNNNNCTC 1 cut(s) 36
Bpu14I TTCGAA 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 11
BseDI CCNNGG 1 cut(s) 11
BseGI GGATG 2 cut(s) 21, 112
BsiHKCI CYCGRG 1 cut(s) 10
BsoBI CYCGRG 1 cut(s) 10
Bsp119I TTCGAA 1 cut(s) 126
BspT104I TTCGAA 1 cut(s) 126
BssECI CCNNGG 1 cut(s) 11
BstBI TTCGAA 1 cut(s) 126
BstF5I GGATG 2 cut(s) 21, 112
BtsCI GGATG 2 cut(s) 21, 112
Eco88I CYCGRG 1 cut(s) 10
FaiI YATR 1 cut(s) 71
FblI GTMKAC 2 cut(s) 66, 111
FokI GGATG 2 cut(s) 28, 119
HincII GTYRAC 2 cut(s) 67, 112
HindII GTYRAC 2 cut(s) 67, 112
HinfI GANTC 2 cut(s) 19, 123
Hpy166II GTNNAC 2 cut(s) 67, 112
Hpy188III TCNNGA 1 cut(s) 10
Hpy8I GTNNAC 2 cut(s) 67, 112
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 1 cut(s) 111
HpyCH4V TGCA 1 cut(s) 95
LweI GCATC 1 cut(s) 62
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 47
MnlI CCTC 1 cut(s) 6
NspV TTCGAA 1 cut(s) 126
PfeI GAWTC 1 cut(s) 123
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
SalI GTCGAC 2 cut(s) 65, 110
SchI GAGTC 1 cut(s) 13
SetI ASST 2 cut(s) 39, 134
SfaNI GCATC 1 cut(s) 62
SfuI TTCGAA 1 cut(s) 126
SgeI CNNG 4 cut(s) 22, 24, 61, 104
TaqI TCGA 3 cut(s) 66, 111, 126
TfiI GAWTC 1 cut(s) 123
TspDTI ATGAA 1 cut(s) 31
TspGWI ACGGA 1 cut(s) 129
XmiI GTMKAC 2 cut(s) 66, 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.