Rroxscaffold_4G00311650

pectinesterase pectinesterase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0031058
Physical Location & Seq
Forward (+)
34184331 .. 34187872
3542 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00311650.1

Sequence Viewer

Length: 228 bp
ATGAATCTAAAGGCGGACGTGACCGTGTGTAAGGATGGGTGTGACTACCGAACGGTGCAGGAGGCGGTGGATAAGGCGCTGAAGAATTTAGAGGTAGGGAAAAGGTTTGTGATTCGGATAAAGACGAGGGTGTACGAGGAGACCGTAAGGGTGGCAAAAAAAACAGATTATTATAGGGCAATAATATGTTTATTGGGGAGCAATAATATGATTATTGGGTATTATTAG

Protein Analysis

75

Amino Acids

8.67

Weight (kDa)

9.24

Isoelectric Point (pI)

10.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pectinesterase PF01095 6 - 56 3.4e-08 Pectinesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031058)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000284.1_g000024
rosa_roxburghii Rroxscaffold_4G00311650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 14, 65
AcsI RAATTY 1 cut(s) 85
AcuI CTGAAG 1 cut(s) 101
AfaI GTAC 1 cut(s) 134
AjiI CACGTC 1 cut(s) 19
Alw26I GTCTC 1 cut(s) 134
ApoI RAATTY 1 cut(s) 85
AspLEI GCGC 1 cut(s) 79
BccI CCATC 1 cut(s) 29
BcoDI GTCTC 1 cut(s) 134
BfoI RGCGCY 1 cut(s) 80
BmgBI CACGTC 1 cut(s) 19
BsaI GGTCTC 1 cut(s) 134
BseGI GGATG 1 cut(s) 40
BseRI GAGGAG 1 cut(s) 152
BsgI GTGCAG 1 cut(s) 77
BsmAI GTCTC 1 cut(s) 134
Bso31I GGTCTC 1 cut(s) 134
BspACI CCGC 2 cut(s) 14, 65
BspTNI GGTCTC 1 cut(s) 134
Bst4CI ACNGT 3 cut(s) 25, 55, 145
BstF5I GGATG 1 cut(s) 40
BstH2I RGCGCY 1 cut(s) 80
BstHHI GCGC 1 cut(s) 79
BstMAI GTCTC 1 cut(s) 134
BtrI CACGTC 1 cut(s) 19
BtsCI GGATG 1 cut(s) 40
CfoI GCGC 1 cut(s) 79
Csp6I GTAC 1 cut(s) 133
CviQI GTAC 1 cut(s) 133
EciI GGCGGA 1 cut(s) 29
Eco31I GGTCTC 1 cut(s) 134
Eco57I CTGAAG 1 cut(s) 101
FaiI YATR 3 cut(s) 174, 187, 209
FokI GGATG 1 cut(s) 47
GlaI GCGC 1 cut(s) 78
HaeII RGCGCY 1 cut(s) 80
HhaI GCGC 1 cut(s) 79
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HinfI GANTC 2 cut(s) 4, 112
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 1 cut(s) 117
Hpy8I GTNNAC 1 cut(s) 133
HpyCH4III ACNGT 3 cut(s) 25, 55, 145
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 1 cut(s) 58
HpySE526I ACGT 1 cut(s) 18
HspAI GCGC 1 cut(s) 77
LmnI GCTCC 1 cut(s) 198
LpnPI CCDG 1 cut(s) 44
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 2 cut(s) 19, 41
MboII GAAGA 1 cut(s) 94
MluCI AATT 1 cut(s) 85
MnlI CCTC 4 cut(s) 55, 85, 120, 130
NmuCI GTSAC 2 cut(s) 19, 41
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PfeI GAWTC 2 cut(s) 4, 112
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SetI ASST 3 cut(s) 21, 96, 107
SgeI CNNG 5 cut(s) 31, 37, 71, 138, 148
Sse9I AATT 1 cut(s) 85
SsiI CCGC 2 cut(s) 14, 65
TaaI ACNGT 3 cut(s) 25, 55, 145
TaiI ACGT 1 cut(s) 21
TasI AATT 1 cut(s) 85
TfiI GAWTC 2 cut(s) 4, 112
TseFI GTSAC 2 cut(s) 19, 41
Tsp45I GTSAC 2 cut(s) 19, 41
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.