Rroxscaffold_5G00356590

AtPRD1,PRD1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0025572
Physical Location & Seq
Reverse (-)
35874516 .. 35884166
9651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00356590.1

Sequence Viewer

Length: 879 bp
ATGTCATTTGAGGATTTGGGAGTCAGAATGACAGCCAGGTGGTGTGGTGAAAAGAGAGATGATGAAGTTATTTTGATTATGCAGGTGTGCAGAAAACAAAAGTACACTGACAGCACCAAGGATGATGGTGCGCAAGAGCATAGAGAGGTGATCAGCAACCTGGATGATTTGGGACAAGTTTGTGAGTATCTCATTCGTTTGATGTCATCAGAGTCATCTTTAGATAAGGATTCTGGAGGATCACATCTTGGGGATAAGAGATTCTTCTTTTGGTTGAATCTATACTTCTTATTGGGATCAGTTGTGGGGCAGAGTGAGGCACTGGCAGGCGTCTGCGAGGTCTGGTGGCTGGGCGCTAGGCAGCCTATTGAGGAGGGATTCGCCTCTCTCAATCAAGCGGGACACCCTTGGGTGACGAAGTGGCGAGTGAACTTCACCTCCCGGGCGCGCTCGTTTGGATTCATCCCGCCACGAATTACCAAGACTGCCACTAGCGCCGAAGAGCCTCGACCTGCCCTTCTTCATGGTGGATTCAAATCGGTACAATTTCGCTCTACCATTGATCGAAGAATAGTTCGAGCTGCTACGAAAAGAAAGCAAGCCAACCATCCCGGTAACACGTTCGATGCACTTGAGCCGGAGGCGTTAAAAGCAATTGACAAGTTCAACTTGGACGGAATCGGGCCATTAATGCCATCGCTTTCTTGGACGGCAAGGATCCATCCGATAAATCATTCGGTGATCTATTTGAGAATTCAAAGAAGTCGCATACCTAGAATGGTTGAACTTGATGCTGAAAGAATCGACATCTACGTATCGTTTGGGAGCATTTCGTGCTGTCCAAGATTCAAATGGAGGAAATTGCAAAAGGGTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

292

Amino Acids

33.26

Weight (kDa)

9.18

Isoelectric Point (pI)

42.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025572)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003914.1_g000007 Rmu_sc0008191.1_g000020
rosa_roxburghii Rroxscaffold_5G00356590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 73
Acc16I TGCGCA 1 cut(s) 132
Acc36I ACCTGC 2 cut(s) 73, 520
AccII CGCG 1 cut(s) 448
AciI CCGC 2 cut(s) 398, 467
AclWI GGATC 4 cut(s) 247, 304, 712, 725
AcsI RAATTY 1 cut(s) 753
AcyI GRCGYC 1 cut(s) 330
AfaI GTAC 2 cut(s) 104, 543
AflIII ACRYGT 1 cut(s) 618
AgsI TTSAA 6 cut(s) 277, 535, 667, 758, 785, 850
AjnI CCWGG 2 cut(s) 35, 159
AloI GAACNNNNNNTCC 2 cut(s) 422, 454
AluBI AGCT 1 cut(s) 581
AluI AGCT 1 cut(s) 581
AlwI GGATC 4 cut(s) 247, 304, 712, 725
Ama87I CYCGRG 1 cut(s) 441
AoxI GGCC 1 cut(s) 683
ApeKI GCWGC 2 cut(s) 361, 581
ApoI RAATTY 1 cut(s) 753
AseI ATTAAT 1 cut(s) 689
AspLEI GCGC 5 cut(s) 133, 356, 448, 450, 497
AspS9I GGNCC 1 cut(s) 683
AsuC2I CCSGG 3 cut(s) 442, 443, 612
AsuHPI GGTGA 5 cut(s) 59, 160, 424, 427, 751
AvaI CYCGRG 1 cut(s) 441
BamHI GGATCC 1 cut(s) 717
BbvI GCAGC 2 cut(s) 373, 568
BccI CCATC 4 cut(s) 119, 615, 703, 729
BceAI ACGGC 1 cut(s) 726
BciT130I CCWGG 2 cut(s) 37, 161
BclI TGATCA 1 cut(s) 150
BcnI CCSGG 3 cut(s) 442, 443, 612
BfaI CTAG 3 cut(s) 357, 492, 774
BfoI RGCGCY 2 cut(s) 357, 498
BfuAI ACCTGC 2 cut(s) 73, 520
BisI GCNGC 2 cut(s) 362, 582
BlsI GCNGC 2 cut(s) 363, 583
Bme1390I CCNGG 5 cut(s) 37, 161, 442, 443, 612
BmeT110I CYCGRG 1 cut(s) 441
BmgT120I GGNCC 1 cut(s) 683
BmiI GGNNCC 1 cut(s) 719
BmrFI CCNGG 5 cut(s) 37, 161, 442, 443, 612
BmsI GCATC 2 cut(s) 616, 781
BpmI CTGGAG 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 653
BpuMI CCSGG 3 cut(s) 442, 443, 612
BsaAI YACGTR 1 cut(s) 814
BsaBI GATNNNNATC 1 cut(s) 535
BsaHI GRCGYC 1 cut(s) 330
BsaJI CCNNGG 3 cut(s) 117, 407, 441
BsaXI ACNNNNNCTCC 2 cut(s) 422, 452
Bse1I ACTGG 1 cut(s) 327
Bse8I GATNNNNATC 1 cut(s) 535
BseBI CCWGG 2 cut(s) 37, 161
BseDI CCNNGG 3 cut(s) 117, 407, 441
BseGI GGATG 5 cut(s) 127, 169, 462, 607, 721
BseJI GATNNNNATC 1 cut(s) 535
BseNI ACTGG 1 cut(s) 327
BsePI GCGCGC 1 cut(s) 446
BseRI GAGGAG 1 cut(s) 386
BseXI GCAGC 2 cut(s) 373, 568
BseYI CCCAGC 1 cut(s) 349
BsgI GTGCAG 1 cut(s) 109
Bsh1236I CGCG 1 cut(s) 448
BshFI GGCC 1 cut(s) 685
BsiHKCI CYCGRG 1 cut(s) 441
BsiSI CCGG 3 cut(s) 442, 612, 638
BslFI GGGAC 2 cut(s) 186, 414
BsmFI GGGAC 2 cut(s) 186, 414
BsnI GGCC 1 cut(s) 685
BsoBI CYCGRG 1 cut(s) 441
Bsp143I GATC 6 cut(s) 150, 239, 296, 562, 717, 741
BspACI CCGC 2 cut(s) 398, 467
BspANI GGCC 1 cut(s) 685
BspFNI CGCG 1 cut(s) 448
BspLI GGNNCC 1 cut(s) 719
BspMI ACCTGC 2 cut(s) 73, 520
BspPI GGATC 4 cut(s) 247, 304, 712, 725
BspQI GCTCTTC 1 cut(s) 495
BsrI ACTGG 1 cut(s) 327
BssECI CCNNGG 3 cut(s) 117, 407, 441
BssHII GCGCGC 1 cut(s) 446
BssMI GATC 6 cut(s) 150, 239, 296, 562, 717, 741
BssNI GRCGYC 1 cut(s) 330
BssT1I CCWWGG 2 cut(s) 117, 407
Bst2UI CCWGG 2 cut(s) 37, 161
Bst6I CTCTTC 1 cut(s) 495
BstACI GRCGYC 1 cut(s) 330
BstAPI GCANNNNNTGC 1 cut(s) 834
BstBAI YACGTR 1 cut(s) 814
BstC8I GCNNGC 3 cut(s) 328, 448, 600
BstF5I GGATG 5 cut(s) 127, 169, 462, 607, 721
BstFNI CGCG 1 cut(s) 448
BstH2I RGCGCY 2 cut(s) 357, 498
BstHHI GCGC 5 cut(s) 133, 356, 448, 450, 497
BstKTI GATC 6 cut(s) 153, 242, 299, 565, 720, 744
BstMBI GATC 6 cut(s) 150, 239, 296, 562, 717, 741
BstMWI GCNNNNNNNGC 4 cut(s) 494, 650, 691, 834
BstNI CCWGG 2 cut(s) 37, 161
BstSCI CCNGG 5 cut(s) 35, 159, 440, 441, 610
BstSNI TACGTA 1 cut(s) 814
BstUI CGCG 1 cut(s) 448
BstV1I GCAGC 2 cut(s) 373, 568
BstX2I RGATCY 1 cut(s) 717
BstYI RGATCY 1 cut(s) 717
BsuRI GGCC 1 cut(s) 685
BtgZI GCGATG 1 cut(s) 681
BtsCI GGATG 5 cut(s) 127, 169, 462, 607, 721
BtsIMutI CAGTG 2 cut(s) 105, 320
BveI ACCTGC 2 cut(s) 73, 520
Cac8I GCNNGC 3 cut(s) 328, 448, 600
CfoI GCGC 5 cut(s) 133, 356, 448, 450, 497
Cfr13I GGNCC 1 cut(s) 683
Cfr9I CCCGGG 1 cut(s) 441
CseI GACGC 1 cut(s) 319
Csp6I GTAC 2 cut(s) 103, 542
CviAII CATG 1 cut(s) 524
CviJI RGCY 8 cut(s) 35, 349, 364, 505, 581, 602, 637, 685
CviKI_1 RGCY 8 cut(s) 35, 349, 364, 505, 581, 602, 637, 685
CviQI GTAC 2 cut(s) 103, 542
DpnI GATC 6 cut(s) 152, 241, 298, 564, 719, 743
DpnII GATC 6 cut(s) 150, 239, 296, 562, 717, 741
Eam1104I CTCTTC 1 cut(s) 495
EarI CTCTTC 1 cut(s) 495
Eco105I TACGTA 1 cut(s) 814
Eco130I CCWWGG 2 cut(s) 117, 407
Eco88I CYCGRG 1 cut(s) 441
EcoRI GAATTC 1 cut(s) 753
EcoRII CCWGG 2 cut(s) 35, 159
EcoT14I CCWWGG 2 cut(s) 117, 407
ErhI CCWWGG 2 cut(s) 117, 407
FaeI CATG 1 cut(s) 527
FaiI YATR 5 cut(s) 80, 141, 283, 525, 770
FalI AAGNNNNNCTT 4 cut(s) 248, 280, 653, 685
FaqI GGGAC 2 cut(s) 186, 414
FatI CATG 1 cut(s) 523
FauI CCCGC 2 cut(s) 391, 474
FbaI TGATCA 1 cut(s) 150
Fnu4HI GCNGC 2 cut(s) 362, 582
FokI GGATG 5 cut(s) 134, 176, 449, 594, 708
Fsp4HI GCNGC 2 cut(s) 362, 582
FspBI CTAG 3 cut(s) 357, 492, 774
FspI TGCGCA 1 cut(s) 132
GlaI GCGC 5 cut(s) 132, 355, 447, 449, 496
GluI GCNGC 2 cut(s) 362, 582
GsaI CCCAGC 1 cut(s) 353
GsuI CTGGAG 1 cut(s) 255
HaeII RGCGCY 2 cut(s) 357, 498
HaeIII GGCC 1 cut(s) 685
HapII CCGG 3 cut(s) 442, 612, 638
HgaI GACGC 1 cut(s) 319
HhaI GCGC 5 cut(s) 133, 356, 448, 450, 497
Hin1I GRCGYC 1 cut(s) 330
Hin1II CATG 1 cut(s) 527
Hin6I GCGC 5 cut(s) 131, 354, 446, 448, 495
HinP1I GCGC 5 cut(s) 131, 354, 446, 448, 495
HpaII CCGG 3 cut(s) 442, 612, 638
HphI GGTGA 5 cut(s) 59, 160, 424, 427, 751
Hpy166II GTNNAC 2 cut(s) 105, 430
Hpy188I TCNGA 3 cut(s) 26, 211, 726
Hpy188III TCNNGA 1 cut(s) 234
Hpy8I GTNNAC 2 cut(s) 105, 430
HpyAV CCTTC 1 cut(s) 527
HpyCH4IV ACGT 2 cut(s) 620, 813
HpyCH4V TGCA 4 cut(s) 82, 90, 629, 865
HpyF10VI GCNNNNNNNGC 4 cut(s) 494, 650, 691, 834
HpySE526I ACGT 2 cut(s) 620, 813
Hsp92I GRCGYC 1 cut(s) 330
Hsp92II CATG 1 cut(s) 527
HspAI GCGC 5 cut(s) 131, 354, 446, 448, 495
Ksp22I TGATCA 1 cut(s) 150
Kzo9I GATC 6 cut(s) 150, 239, 296, 562, 717, 741
LguI GCTCTTC 1 cut(s) 495
LmnI GCTCC 1 cut(s) 825
Lsp1109I GCAGC 2 cut(s) 373, 568
LweI GCATC 2 cut(s) 616, 781
MaeI CTAG 3 cut(s) 357, 492, 774
MaeII ACGT 2 cut(s) 620, 813
MaeIII GTNAC 2 cut(s) 412, 614
MalI GATC 6 cut(s) 152, 241, 298, 564, 719, 743
MboI GATC 6 cut(s) 150, 239, 296, 562, 717, 741
MboII GAAGA 4 cut(s) 256, 512, 512, 579
MfeI CAATTG 1 cut(s) 654
MflI RGATCY 1 cut(s) 717
MluCI AATT 5 cut(s) 474, 545, 654, 753, 860
MlyI GAGTC 2 cut(s) 30, 221
MseI TTAA 2 cut(s) 647, 689
MspI CCGG 3 cut(s) 442, 612, 638
MspR9I CCNGG 5 cut(s) 37, 161, 442, 443, 612
MunI CAATTG 1 cut(s) 654
MvaI CCWGG 2 cut(s) 37, 161
MvnI CGCG 1 cut(s) 448
MwoI GCNNNNNNNGC 4 cut(s) 494, 650, 691, 834
NciI CCSGG 3 cut(s) 442, 443, 612
NdeII GATC 6 cut(s) 150, 239, 296, 562, 717, 741
NlaIII CATG 1 cut(s) 527
NlaIV GGNNCC 1 cut(s) 719
NmuCI GTSAC 1 cut(s) 412
NsbI TGCGCA 1 cut(s) 132
PaqCI CACCTGC 1 cut(s) 73
PauI GCGCGC 1 cut(s) 446
PciSI GCTCTTC 1 cut(s) 495
PcsI WCGNNNNNNNCGW 1 cut(s) 810
PfeI GAWTC 9 cut(s) 230, 261, 277, 378, 459, 531, 678, 801, 846
PkrI GCNGC 2 cut(s) 363, 583
PleI GAGTC 2 cut(s) 29, 220
PpsI GAGTC 2 cut(s) 29, 220
Ppu21I YACGTR 1 cut(s) 814
PshBI ATTAAT 1 cut(s) 689
Psp6I CCWGG 2 cut(s) 35, 159
PspFI CCCAGC 1 cut(s) 349
PspGI CCWGG 2 cut(s) 35, 159
PspN4I GGNNCC 1 cut(s) 719
PspPI GGNCC 1 cut(s) 683
PsuI RGATCY 1 cut(s) 717
PteI GCGCGC 1 cut(s) 446
RsaI GTAC 2 cut(s) 104, 543
RsaNI GTAC 2 cut(s) 103, 542
SapI GCTCTTC 1 cut(s) 495
SaqAI TTAA 2 cut(s) 647, 689
SatI GCNGC 2 cut(s) 362, 582
Sau3AI GATC 6 cut(s) 150, 239, 296, 562, 717, 741
Sau96I GGNCC 1 cut(s) 683
SchI GAGTC 2 cut(s) 30, 221
ScrFI CCNGG 5 cut(s) 37, 161, 442, 443, 612
SfaNI GCATC 2 cut(s) 616, 781
SmaI CCCGGG 1 cut(s) 443
SmlI CTYRAG 1 cut(s) 632
SmoI CTYRAG 1 cut(s) 632
SnaBI TACGTA 1 cut(s) 814
Sse9I AATT 5 cut(s) 474, 545, 654, 753, 860
SsiI CCGC 2 cut(s) 398, 467
SspMI CTAG 3 cut(s) 357, 492, 774
StyD4I CCNGG 5 cut(s) 35, 159, 440, 441, 610
StyI CCWWGG 2 cut(s) 117, 407
TaiI ACGT 2 cut(s) 623, 816
TaqI TCGA 5 cut(s) 508, 565, 577, 624, 804
TasI AATT 5 cut(s) 474, 545, 654, 753, 860
TatI WGTACW 1 cut(s) 102
TfiI GAWTC 9 cut(s) 230, 261, 277, 378, 459, 531, 678, 801, 846
Tru1I TTAA 2 cut(s) 647, 689
Tru9I TTAA 2 cut(s) 647, 689
TscAI CASTG 2 cut(s) 112, 327
TseFI GTSAC 1 cut(s) 412
TseI GCWGC 2 cut(s) 361, 581
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 3 cut(s) 78, 451, 512
TspGWI ACGGA 1 cut(s) 690
TspMI CCCGGG 1 cut(s) 441
TspRI CASTG 2 cut(s) 112, 327
VspI ATTAAT 1 cut(s) 689
XapI RAATTY 1 cut(s) 753
XcmI CCANNNNNNNNNTGG 2 cut(s) 702, 849
XmaI CCCGGG 1 cut(s) 441
XspI CTAG 3 cut(s) 357, 492, 774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.