Rroxscaffold_5G00360520

Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
41018274 .. 41019007
734 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00360520.1

Sequence Viewer

Length: 201 bp
ATGTGGACGAGCACTCACTTGATATGCGATATCGACGACAACGCTCTCACCGTCGTTTCTATCCTCGGCCAAGACAGCAGCGTTTGGTCCAAGAGCACCAACTTTCCTCGGCCTGAAGAAATTGGGACCATTATTAAAGATTTTGAGCTCACAATTGATAATGCTAGCACCCATAGTGGAGCATCATTTGGAGAGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

66

Amino Acids

7.21

Weight (kDa)

4.22

Isoelectric Point (pI)

29.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0031388)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0007445.1_g000002
rosa_roxburghii Rroxscaffold_5G00360520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 67
AcuI CTGAAG 1 cut(s) 135
AluBI AGCT 1 cut(s) 148
AluI AGCT 1 cut(s) 148
Alw21I GWGCWC 3 cut(s) 14, 98, 150
AoxI GGCC 2 cut(s) 67, 110
ApeKI GCWGC 1 cut(s) 78
AspS9I GGNCC 2 cut(s) 87, 126
AsuHPI GGTGA 1 cut(s) 40
AsuNHI GCTAGC 1 cut(s) 164
AvaII GGWCC 2 cut(s) 87, 126
BanII GRGCYC 1 cut(s) 150
Bbv12I GWGCWC 3 cut(s) 14, 98, 150
BbvI GCAGC 1 cut(s) 90
BfaI CTAG 1 cut(s) 165
BisI GCNGC 1 cut(s) 79
BlsI GCNGC 1 cut(s) 80
Bme18I GGWCC 2 cut(s) 87, 126
BmgT120I GGNCC 2 cut(s) 87, 126
BmiI GGNNCC 1 cut(s) 127
BmsI GCATC 1 cut(s) 191
BmtI GCTAGC 1 cut(s) 168
BsaJI CCNNGG 2 cut(s) 64, 107
BseDI CCNNGG 2 cut(s) 64, 107
BseXI GCAGC 1 cut(s) 90
BshFI GGCC 2 cut(s) 69, 112
BsiHKAI GWGCWC 3 cut(s) 14, 98, 150
BslFI GGGAC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 2 cut(s) 69, 112
Bsp1286I GDGCHC 3 cut(s) 14, 98, 150
BspANI GGCC 2 cut(s) 69, 112
BspLI GGNNCC 1 cut(s) 127
BspOI GCTAGC 1 cut(s) 168
BssECI CCNNGG 2 cut(s) 64, 107
Bst4CI ACNGT 1 cut(s) 52
BstC8I GCNNGC 1 cut(s) 166
BstMWI GCNNNNNNNGC 1 cut(s) 75
BstV1I GCAGC 1 cut(s) 90
BsuRI GGCC 2 cut(s) 69, 112
Cac8I GCNNGC 1 cut(s) 166
Cfr13I GGNCC 2 cut(s) 87, 126
CviJI RGCY 3 cut(s) 69, 112, 148
CviKI_1 RGCY 3 cut(s) 69, 112, 148
EaeI YGGCCR 1 cut(s) 67
Ecl136II GAGCTC 1 cut(s) 148
Eco24I GRGCYC 1 cut(s) 150
Eco32I GATATC 1 cut(s) 31
Eco47I GGWCC 2 cut(s) 87, 126
Eco53kI GAGCTC 1 cut(s) 148
Eco57I CTGAAG 1 cut(s) 135
EcoICRI GAGCTC 1 cut(s) 148
EcoRV GATATC 1 cut(s) 31
EcoT38I GRGCYC 1 cut(s) 150
FaiI YATR 2 cut(s) 25, 174
FaqI GGGAC 1 cut(s) 139
Fnu4HI GCNGC 1 cut(s) 79
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 1 cut(s) 79
FspBI CTAG 1 cut(s) 165
GluI GCNGC 1 cut(s) 79
HaeIII GGCC 2 cut(s) 69, 112
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 1 cut(s) 6
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 2 cut(s) 38, 56
HpyCH4III ACNGT 1 cut(s) 52
HpyF10VI GCNNNNNNNGC 1 cut(s) 75
LmnI GCTCC 1 cut(s) 179
LpnPI CCDG 1 cut(s) 126
Lsp1109I GCAGC 1 cut(s) 90
LweI GCATC 1 cut(s) 191
MaeI CTAG 1 cut(s) 165
MboII GAAGA 1 cut(s) 128
MfeI CAATTG 1 cut(s) 153
MhlI GDGCHC 3 cut(s) 14, 98, 150
MluCI AATT 2 cut(s) 120, 153
MnlI CCTC 3 cut(s) 74, 117, 187
MseI TTAA 1 cut(s) 135
MunI CAATTG 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 75
NheI GCTAGC 1 cut(s) 164
NlaIV GGNNCC 1 cut(s) 127
NmeAIII GCCGAG 2 cut(s) 45, 88
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PkrI GCNGC 1 cut(s) 80
Psp124BI GAGCTC 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 127
PspPI GGNCC 2 cut(s) 87, 126
SacI GAGCTC 1 cut(s) 150
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 1 cut(s) 79
Sau96I GGNCC 2 cut(s) 87, 126
SduI GDGCHC 3 cut(s) 14, 98, 150
SetI ASST 1 cut(s) 150
SfaNI GCATC 1 cut(s) 191
SgeI CNNG 8 cut(s) 21, 31, 77, 83, 103, 120, 125, 177
SinI GGWCC 2 cut(s) 87, 126
Sse9I AATT 2 cut(s) 120, 153
SspMI CTAG 1 cut(s) 165
SstI GAGCTC 1 cut(s) 150
TaaI ACNGT 1 cut(s) 52
TaqI TCGA 1 cut(s) 33
TasI AATT 2 cut(s) 120, 153
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TseI GCWGC 1 cut(s) 78
VpaK11BI GGWCC 2 cut(s) 87, 126
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.