Rroxscaffold_6G00401540

PAS fold

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0025866
Physical Location & Seq
Forward (+)
23905708 .. 23913704
7997 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00401540.1

Sequence Viewer

Length: 276 bp
ATGAACCAAAGACTGGACATCCCAAAAGATGTGGACCCAAAGTGGGCTTCTATAATTGAGAGTTGCTGGCACAGTGATCCAGCTAACCGGCCAACATTTCTAGAACTGCTCTCAGATACTTCCACCTGGCCATGTTTTTGTTCATTGGGTTTCATTATTTCATTCACTACATTGGTAGAGGAAGCAGCCACTCTCAGATACTTCCACCTGTTCTATAGCAGTCGACAGAGGACTCAGCTCAGGAGGGCCAAGCCTGGAGCATGTGGAGGAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS PAS_9 Pkinase_Tyr

Protein Analysis

91

Amino Acids

10.45

Weight (kDa)

8.46

Isoelectric Point (pI)

49.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025866)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_6G00401540
rosa_samantha Rh3DG310800 Rh6BG189700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 13
AccI GTMKAC 1 cut(s) 223
AclWI GGATC 1 cut(s) 71
AcoI YGGCCR 2 cut(s) 89, 128
AfiI CCNNNNNNNGG 2 cut(s) 13, 43
AjnI CCWGG 2 cut(s) 125, 253
AjuI GAANNNNNNNTTGG 2 cut(s) 31, 63
AluBI AGCT 2 cut(s) 83, 238
AluI AGCT 2 cut(s) 83, 238
AlwI GGATC 1 cut(s) 71
AoxI GGCC 3 cut(s) 89, 128, 246
ApeKI GCWGC 1 cut(s) 185
AspS9I GGNCC 2 cut(s) 34, 246
AvaII GGWCC 1 cut(s) 34
BalI TGGCCA 1 cut(s) 130
BbvI GCAGC 1 cut(s) 197
BciT130I CCWGG 2 cut(s) 127, 255
BfaI CTAG 1 cut(s) 101
BfmI CTRYAG 1 cut(s) 214
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
Bme1390I CCNGG 2 cut(s) 127, 255
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 2 cut(s) 34, 246
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 2 cut(s) 127, 255
BpmI CTGGAG 1 cut(s) 276
Bpu10I CCTNAGC 1 cut(s) 239
Bsc4I CCNNNNNNNGG 2 cut(s) 13, 43
Bse118I RCCGGY 1 cut(s) 87
Bse1I ACTGG 1 cut(s) 18
BseBI CCWGG 2 cut(s) 127, 255
BseGI GGATG 1 cut(s) 18
BseLI CCNNNNNNNGG 2 cut(s) 13, 43
BseMII CTCAG 4 cut(s) 126, 208, 248, 253
BseNI ACTGG 1 cut(s) 18
BseXI GCAGC 1 cut(s) 197
BshFI GGCC 3 cut(s) 91, 130, 248
BsiSI CCGG 1 cut(s) 88
BslI CCNNNNNNNGG 2 cut(s) 13, 43
BsnI GGCC 3 cut(s) 91, 130, 248
Bsp143I GATC 1 cut(s) 76
BspANI GGCC 3 cut(s) 91, 130, 248
BspCNI CTCAG 4 cut(s) 125, 207, 247, 252
BspLI GGNNCC 1 cut(s) 36
BspPI GGATC 1 cut(s) 71
BsrFI RCCGGY 1 cut(s) 87
BsrI ACTGG 1 cut(s) 18
BssAI RCCGGY 1 cut(s) 87
BssMI GATC 1 cut(s) 76
Bst2UI CCWGG 2 cut(s) 127, 255
Bst4CI ACNGT 1 cut(s) 74
BstC8I GCNNGC 1 cut(s) 68
BstDEI CTNAG 4 cut(s) 112, 194, 234, 239
BstF5I GGATG 1 cut(s) 18
BstKTI GATC 1 cut(s) 79
BstMBI GATC 1 cut(s) 76
BstNI CCWGG 2 cut(s) 127, 255
BstNSI RCATGY 1 cut(s) 264
BstSCI CCNGG 2 cut(s) 125, 253
BstSFI CTRYAG 1 cut(s) 214
BstV1I GCAGC 1 cut(s) 197
BsuRI GGCC 3 cut(s) 91, 130, 248
BtsCI GGATG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 79
Cac8I GCNNGC 1 cut(s) 68
Cfr10I RCCGGY 1 cut(s) 87
Cfr13I GGNCC 2 cut(s) 34, 246
CspCI CAANNNNNGTGG 2 cut(s) 12, 47
CviAII CATG 2 cut(s) 132, 261
CviJI RGCY 8 cut(s) 47, 83, 91, 130, 188, 238, 248, 253
CviKI_1 RGCY 8 cut(s) 47, 83, 91, 130, 188, 238, 248, 253
DdeI CTNAG 4 cut(s) 112, 194, 234, 239
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
EaeI YGGCCR 2 cut(s) 89, 128
Eco47I GGWCC 1 cut(s) 34
EcoRII CCWGG 2 cut(s) 125, 253
FaeI CATG 2 cut(s) 135, 264
FaiI YATR 4 cut(s) 53, 133, 216, 262
FatI CATG 2 cut(s) 131, 260
FblI GTMKAC 1 cut(s) 223
Fnu4HI GCNGC 1 cut(s) 186
FokI GGATG 1 cut(s) 5
Fsp4HI GCNGC 1 cut(s) 186
FspBI CTAG 1 cut(s) 101
GluI GCNGC 1 cut(s) 186
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 3 cut(s) 91, 130, 248
HapII CCGG 1 cut(s) 88
Hin1II CATG 2 cut(s) 135, 264
HincII GTYRAC 1 cut(s) 224
HindII GTYRAC 1 cut(s) 224
HinfI GANTC 1 cut(s) 232
HpaII CCGG 1 cut(s) 88
Hpy166II GTNNAC 2 cut(s) 34, 224
Hpy188I TCNGA 2 cut(s) 115, 197
Hpy188III TCNNGA 2 cut(s) 101, 241
Hpy8I GTNNAC 2 cut(s) 34, 224
HpyCH4III ACNGT 1 cut(s) 74
HpyF3I CTNAG 4 cut(s) 112, 194, 234, 239
Hsp92II CATG 2 cut(s) 135, 264
Kzo9I GATC 1 cut(s) 76
LmnI GCTCC 1 cut(s) 257
LpnPI CCDG 9 cut(s) 52, 93, 101, 112, 139, 221, 226, 240, 267
Lsp1109I GCAGC 1 cut(s) 197
MaeI CTAG 1 cut(s) 101
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MlsI TGGCCA 1 cut(s) 130
MluCI AATT 1 cut(s) 54
MluNI TGGCCA 1 cut(s) 130
MlyI GAGTC 1 cut(s) 226
MnlI CCTC 4 cut(s) 172, 222, 237, 260
Mox20I TGGCCA 1 cut(s) 130
MscI TGGCCA 1 cut(s) 130
Msp20I TGGCCA 1 cut(s) 130
MspI CCGG 1 cut(s) 88
MspR9I CCNGG 2 cut(s) 127, 255
MvaI CCWGG 2 cut(s) 127, 255
NdeII GATC 1 cut(s) 76
NlaIII CATG 2 cut(s) 135, 264
NlaIV GGNNCC 1 cut(s) 36
NspI RCATGY 1 cut(s) 264
PflMI CCANNNNNTGG 1 cut(s) 13
PkrI GCNGC 1 cut(s) 187
PleI GAGTC 1 cut(s) 226
PpsI GAGTC 1 cut(s) 226
Psp6I CCWGG 2 cut(s) 125, 253
PspGI CCWGG 2 cut(s) 125, 253
PspN4I GGNNCC 1 cut(s) 36
PspPI GGNCC 2 cut(s) 34, 246
SalI GTCGAC 1 cut(s) 222
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 1 cut(s) 76
Sau96I GGNCC 2 cut(s) 34, 246
SchI GAGTC 1 cut(s) 226
ScrFI CCNGG 2 cut(s) 127, 255
SetI ASST 4 cut(s) 85, 128, 210, 240
SfcI CTRYAG 1 cut(s) 214
SinI GGWCC 1 cut(s) 34
Sse9I AATT 1 cut(s) 54
SspMI CTAG 1 cut(s) 101
StyD4I CCNGG 2 cut(s) 125, 253
TaaI ACNGT 1 cut(s) 74
TaqI TCGA 1 cut(s) 223
TasI AATT 1 cut(s) 54
TscAI CASTG 1 cut(s) 79
TseI GCWGC 1 cut(s) 185
TspDTI ATGAA 4 cut(s) 17, 132, 142, 150
TspRI CASTG 1 cut(s) 79
Van91I CCANNNNNTGG 1 cut(s) 13
VpaK11BI GGWCC 1 cut(s) 34
XbaI TCTAGA 1 cut(s) 100
XceI RCATGY 1 cut(s) 264
XmiI GTMKAC 1 cut(s) 223
XspI CTAG 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.