Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0032212

Physical Location & Seq

Genomic Coordinates Reverse (-)

20082573 .. 20083643

Gene Structure 1071 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00180760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGCGTGGCAAAGAGGCCAATGAAGGAGTACCATTTCTTGAAGGATCCAAAGCTATTTTGTATAATGAGCTAGGGTCTCTAAAGCATGAAAAACTCAAACATGGCTGCAATTTTTCTTTTACTTCTTCTTCTTCTTCAAGTTGCAGCTGCTCAACAAGGGAATATCAGCCTAGGCAAGGAAATGACCTTGCTGTAGGCATCTGGTTTGAGAAAACCAATCCGAAAACAATTATCTGGATAGCAAATCGTGATGCTGTTAAACAAGAGCCACTTCCTAATGATGTTCAATTGACTGTGAGTGACAAAGGAGTGGAGCTCATTTCAACAAACAAGAATGCCTTCCTTATACCAATTTCAAATTCTTCGCAGCATGCTGTCAGGGCCTCCATGCTTGATTCAGGTAACTTTGTCCTCTACAATTCTGATTCAAACATCATTTGGCAGACTTTTGATGTTCCAACAGATACCATTGTATCCGGGCAGCGTCTGTTGGCTGGAACAAAGCTCATCTCCTCCTTCTCGAACATGAATCATGCAAGTGGAAGGTTTCAAGTGATCATGCAGAGAGATGGCAACCTGGTTCAGTATCCAATTGGTCCATTTACATTGAGTTCTAATCAATATTCTTATTGGAACACTAGGACATTCACAGCTGGGAACAATGTGTCCCTCAATCTTGATCAAAATGAGGGGCTCTATCTTCTTGATTCCACCGGTTTCAAGATAAAAAGTTTGTTTTCTCTTCAGAAAGACCGTTCTATGTATCATAGCTATTGTCTGACGATTGATGCTGATGGAATACTCCGGTTGTACTCCTACAGTTTTGTTTTAATGATTCCTGGTCAATTGATTGGTCACCAACTGATAGTAAGTGTGCTCCTATTGGCCTTTGTGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

299

Amino Acids

33.26

Weight (kDa)

7.68

Isoelectric Point (pI)

24.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	76 - 164	1.2e-14	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0032212)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_7G00180760 Rroxscaffold_7G00181170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	39, 52
AcsI	RAATTY	1 cut(s)	358
AcuI	CTGAAG	1 cut(s)	728
AfaI	GTAC	2 cut(s)	30, 812
AfiI	CCNNNNNNNGG	1 cut(s)	176
AgeI	ACCGGT	1 cut(s)	713
AgsI	TTSAA	8 cut(s)	41, 138, 287, 324, 357, 429, 551, 721
AjnI	CCWGG	2 cut(s)	576, 838
AjuI	GAANNNNNNNTTGG	2 cut(s)	343, 375
AloI	GAACNNNNNNTCC	2 cut(s)	650, 682
AluBI	AGCT	7 cut(s)	53, 70, 147, 316, 505, 653, 771
AluI	AGCT	7 cut(s)	53, 70, 147, 316, 505, 653, 771
Alw21I	GWGCWC	2 cut(s)	318, 879
Alw26I	GTCTC	1 cut(s)	81
AlwI	GGATC	2 cut(s)	39, 52
AlwNI	CAGNNNCTG	1 cut(s)	487
AoxI	GGCC	4 cut(s)	15, 381, 885, 894
ApeKI	GCWGC	5 cut(s)	105, 144, 147, 367, 481
ApoI	RAATTY	1 cut(s)	358
AsiGI	ACCGGT	1 cut(s)	713
Asp700I	GAANNNNTTC	1 cut(s)	338
AspA2I	CCTAGG	1 cut(s)	170
AspS9I	GGNCC	2 cut(s)	381, 596
AsuC2I	CCSGG	1 cut(s)	478
AsuHPI	GGTGA	1 cut(s)	848
AvaII	GGWCC	1 cut(s)	596
AvrII	CCTAGG	1 cut(s)	170
BaeI	ACNNNNGTAYC	4 cut(s)	456, 456, 489, 489
BamHI	GGATCC	1 cut(s)	44
BanII	GRGCYC	2 cut(s)	318, 696
Bbv12I	GWGCWC	2 cut(s)	318, 879
BbvI	GCAGC	5 cut(s)	92, 134, 156, 379, 493
BccI	CCATC	2 cut(s)	563, 788
BciT130I	CCWGG	2 cut(s)	578, 840
BciVI	GTATCC	2 cut(s)	484, 597
BclI	TGATCA	2 cut(s)	555, 679
BcnI	CCSGG	1 cut(s)	478
BcoDI	GTCTC	1 cut(s)	81
BfaI	CTAG	3 cut(s)	71, 171, 639
BfmI	CTRYAG	2 cut(s)	192, 817
BfuI	GTATCC	2 cut(s)	484, 597
BglI	GCCNNNNNGGC	1 cut(s)	893
BisI	GCNGC	5 cut(s)	106, 145, 148, 368, 482
BlnI	CCTAGG	1 cut(s)	170
BlsI	GCNGC	5 cut(s)	107, 146, 149, 369, 483
Bme1390I	CCNGG	3 cut(s)	478, 578, 840
Bme18I	GGWCC	1 cut(s)	596
BmgT120I	GGNCC	2 cut(s)	381, 596
BmiI	GGNNCC	1 cut(s)	46
BmrFI	CCNGG	3 cut(s)	478, 578, 840
BmsI	GCATC	3 cut(s)	207, 241, 778
BplI	GAGNNNNNCTC	2 cut(s)	300, 332
BpuMI	CCSGG	1 cut(s)	478
BsaI	GGTCTC	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	170
BsaWI	WCCGGW	2 cut(s)	713, 804
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
Bse118I	RCCGGY	1 cut(s)	713
BseBI	CCWGG	2 cut(s)	578, 840
BseDI	CCNNGG	1 cut(s)	170
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseRI	GAGGAG	1 cut(s)	502
BseXI	GCAGC	5 cut(s)	92, 134, 156, 379, 493
BseYI	CCCAGC	1 cut(s)	653
BshFI	GGCC	4 cut(s)	17, 383, 887, 896
BshTI	ACCGGT	1 cut(s)	713
BsiHKAI	GWGCWC	2 cut(s)	318, 879
BsiSI	CCGG	3 cut(s)	477, 714, 805
BslFI	GGGAC	1 cut(s)	652
BslI	CCNNNNNNNGG	1 cut(s)	176
BsmAI	GTCTC	1 cut(s)	81
BsmFI	GGGAC	1 cut(s)	652
BsmI	GAATGC	1 cut(s)	340
BsnI	GGCC	4 cut(s)	17, 383, 887, 896
Bso31I	GGTCTC	1 cut(s)	81
Bsp1286I	GDGCHC	3 cut(s)	318, 696, 879
Bsp143I	GATC	3 cut(s)	44, 555, 679
BspANI	GGCC	4 cut(s)	17, 383, 887, 896
BspLI	GGNNCC	1 cut(s)	46
BspPI	GGATC	2 cut(s)	39, 52
BspTNI	GGTCTC	1 cut(s)	81
BsrFI	RCCGGY	1 cut(s)	713
BssAI	RCCGGY	1 cut(s)	713
BssECI	CCNNGG	1 cut(s)	170
BssMI	GATC	3 cut(s)	44, 555, 679
BssT1I	CCWWGG	1 cut(s)	170
Bst2UI	CCWGG	2 cut(s)	578, 840
Bst4CI	ACNGT	3 cut(s)	295, 755, 821
Bst6I	CTCTTC	1 cut(s)	747
BstC8I	GCNNGC	1 cut(s)	372
BstEII	GGTNACC	1 cut(s)	854
BstENI	CCTNNNNNAGG	1 cut(s)	174
BstKTI	GATC	3 cut(s)	47, 558, 682
BstMAI	GTCTC	1 cut(s)	81
BstMBI	GATC	3 cut(s)	44, 555, 679
BstMWI	GCNNNNNNNGC	2 cut(s)	380, 893
BstNI	CCWGG	2 cut(s)	578, 840
BstNSI	RCATGY	1 cut(s)	374
BstPI	GGTNACC	1 cut(s)	854
BstSCI	CCNGG	3 cut(s)	476, 576, 838
BstSFI	CTRYAG	2 cut(s)	192, 817
BstV1I	GCAGC	5 cut(s)	92, 134, 156, 379, 493
BstX2I	RGATCY	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	44
BsuI	GTATCC	2 cut(s)	484, 597
BsuRI	GGCC	4 cut(s)	17, 383, 887, 896
Cac8I	GCNNGC	1 cut(s)	372
CaiI	CAGNNNCTG	1 cut(s)	487
Cfr10I	RCCGGY	1 cut(s)	713
Cfr13I	GGNCC	2 cut(s)	381, 596
CseI	GACGC	1 cut(s)	473
CsiI	ACCWGGT	1 cut(s)	576
Csp6I	GTAC	2 cut(s)	29, 811
CspAI	ACCGGT	1 cut(s)	713
CviAII	CATG	7 cut(s)	86, 101, 371, 388, 526, 533, 559
CviQI	GTAC	2 cut(s)	29, 811
DpnI	GATC	3 cut(s)	46, 557, 681
DpnII	GATC	3 cut(s)	44, 555, 679
Eam1104I	CTCTTC	1 cut(s)	747
EarI	CTCTTC	1 cut(s)	747
Ecl136II	GAGCTC	1 cut(s)	316
Eco130I	CCWWGG	1 cut(s)	170
Eco24I	GRGCYC	2 cut(s)	318, 696
Eco31I	GGTCTC	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	596
Eco53kI	GAGCTC	1 cut(s)	316
Eco57I	CTGAAG	1 cut(s)	728
Eco91I	GGTNACC	1 cut(s)	854
EcoICRI	GAGCTC	1 cut(s)	316
EcoNI	CCTNNNNNAGG	1 cut(s)	174
EcoO109I	RGGNCCY	1 cut(s)	381
EcoO65I	GGTNACC	1 cut(s)	854
EcoRII	CCWGG	2 cut(s)	576, 838
EcoT14I	CCWWGG	1 cut(s)	170
EcoT38I	GRGCYC	2 cut(s)	318, 696
ErhI	CCWWGG	1 cut(s)	170
FaeI	CATG	7 cut(s)	89, 104, 374, 391, 529, 536, 562
FalI	AAGNNNNNCTT	4 cut(s)	255, 287, 323, 355
FaqI	GGGAC	1 cut(s)	652
FatI	CATG	7 cut(s)	85, 100, 370, 387, 525, 532, 558
FbaI	TGATCA	2 cut(s)	555, 679
Fnu4HI	GCNGC	5 cut(s)	106, 145, 148, 368, 482
FriOI	GRGCYC	2 cut(s)	318, 696
Fsp4HI	GCNGC	5 cut(s)	106, 145, 148, 368, 482
FspBI	CTAG	3 cut(s)	71, 171, 639
GluI	GCNGC	5 cut(s)	106, 145, 148, 368, 482
GsaI	CCCAGC	1 cut(s)	657
HaeIII	GGCC	4 cut(s)	17, 383, 887, 896
HapII	CCGG	3 cut(s)	477, 714, 805
HgaI	GACGC	1 cut(s)	473
Hin1II	CATG	7 cut(s)	89, 104, 374, 391, 529, 536, 562
HinfI	GANTC	5 cut(s)	395, 425, 529, 707, 835
HpaII	CCGG	3 cut(s)	477, 714, 805
HphI	GGTGA	1 cut(s)	848
Hpy188I	TCNGA	4 cut(s)	222, 424, 747, 780
Hpy188III	TCNNGA	7 cut(s)	38, 235, 248, 520, 677, 704, 721
HpyAV	CCTTC	5 cut(s)	17, 35, 349, 526, 537
HpyCH4III	ACNGT	3 cut(s)	295, 755, 821
HpyCH4V	TGCA	4 cut(s)	108, 144, 536, 562
HpyF10VI	GCNNNNNNNGC	2 cut(s)	380, 893
Hsp92II	CATG	7 cut(s)	89, 104, 374, 391, 529, 536, 562
Ksp22I	TGATCA	2 cut(s)	555, 679
Kzo9I	GATC	3 cut(s)	44, 555, 679
LmnI	GCTCC	2 cut(s)	313, 882
Lsp1109I	GCAGC	5 cut(s)	92, 134, 156, 379, 493
LweI	GCATC	3 cut(s)	207, 241, 778
MabI	ACCWGGT	1 cut(s)	576
MaeI	CTAG	3 cut(s)	71, 171, 639
MaeIII	GTNAC	3 cut(s)	299, 401, 854
MalI	GATC	3 cut(s)	46, 557, 681
MboI	GATC	3 cut(s)	44, 555, 679
MboII	GAAGA	7 cut(s)	117, 120, 123, 126, 354, 692, 734
MfeI	CAATTG	3 cut(s)	287, 591, 845
MflI	RGATCY	1 cut(s)	44
MhlI	GDGCHC	3 cut(s)	318, 696, 879
MluCI	AATT	8 cut(s)	109, 228, 287, 351, 358, 418, 591, 845
MmeI	TCCRAC	1 cut(s)	482
MnlI	CCTC	6 cut(s)	7, 394, 422, 523, 680, 682
MroXI	GAANNNNTTC	1 cut(s)	338
MseI	TTAA	2 cut(s)	258, 830
MslI	CAYNNNNRTG	1 cut(s)	537
MspA1I	CMGCKG	2 cut(s)	147, 653
MspI	CCGG	3 cut(s)	477, 714, 805
MspR9I	CCNGG	3 cut(s)	478, 578, 840
MunI	CAATTG	3 cut(s)	287, 591, 845
Mva1269I	GAATGC	1 cut(s)	340
MvaI	CCWGG	2 cut(s)	578, 840
MwoI	GCNNNNNNNGC	2 cut(s)	380, 893
NciI	CCSGG	1 cut(s)	478
NdeII	GATC	3 cut(s)	44, 555, 679
NlaIII	CATG	7 cut(s)	89, 104, 374, 391, 529, 536, 562
NlaIV	GGNNCC	1 cut(s)	46
NmuCI	GTSAC	2 cut(s)	299, 854
NspI	RCATGY	1 cut(s)	374
PaeI	GCATGC	1 cut(s)	374
PctI	GAATGC	1 cut(s)	340
PdmI	GAANNNNTTC	1 cut(s)	338
PfeI	GAWTC	5 cut(s)	395, 425, 529, 707, 835
PinAI	ACCGGT	1 cut(s)	713
PkrI	GCNGC	5 cut(s)	107, 146, 149, 369, 483
Psp124BI	GAGCTC	1 cut(s)	318
Psp6I	CCWGG	2 cut(s)	576, 838
PspEI	GGTNACC	1 cut(s)	854
PspFI	CCCAGC	1 cut(s)	653
PspGI	CCWGG	2 cut(s)	576, 838
PspN4I	GGNNCC	1 cut(s)	46
PspPI	GGNCC	2 cut(s)	381, 596
PstNI	CAGNNNCTG	1 cut(s)	487
PsuI	RGATCY	1 cut(s)	44
PvuII	CAGCTG	2 cut(s)	147, 653
RsaI	GTAC	2 cut(s)	30, 812
RsaNI	GTAC	2 cut(s)	29, 811
RseI	CAYNNNNRTG	1 cut(s)	537
SacI	GAGCTC	1 cut(s)	318
SaqAI	TTAA	2 cut(s)	258, 830
SatI	GCNGC	5 cut(s)	106, 145, 148, 368, 482
Sau3AI	GATC	3 cut(s)	44, 555, 679
Sau96I	GGNCC	2 cut(s)	381, 596
ScrFI	CCNGG	3 cut(s)	478, 578, 840
SduI	GDGCHC	3 cut(s)	318, 696, 879
SexAI	ACCWGGT	1 cut(s)	576
SfaNI	GCATC	3 cut(s)	207, 241, 778
SfcI	CTRYAG	2 cut(s)	192, 817
SfiI	GGCCNNNNNGGCC	1 cut(s)	893
SinI	GGWCC	1 cut(s)	596
SmiMI	CAYNNNNRTG	1 cut(s)	537
SphI	GCATGC	1 cut(s)	374
Sse9I	AATT	8 cut(s)	109, 228, 287, 351, 358, 418, 591, 845
SspI	AATATT	1 cut(s)	623
SspMI	CTAG	3 cut(s)	71, 171, 639
SstI	GAGCTC	1 cut(s)	318
StyD4I	CCNGG	3 cut(s)	476, 576, 838
StyI	CCWWGG	1 cut(s)	170
TaaI	ACNGT	3 cut(s)	295, 755, 821
TaqI	TCGA	1 cut(s)	521
TasI	AATT	8 cut(s)	109, 228, 287, 351, 358, 418, 591, 845
TatI	WGTACW	1 cut(s)	810
TfiI	GAWTC	5 cut(s)	395, 425, 529, 707, 835
Tru1I	TTAA	2 cut(s)	258, 830
Tru9I	TTAA	2 cut(s)	258, 830
TseFI	GTSAC	2 cut(s)	299, 854
TseI	GCWGC	5 cut(s)	105, 144, 147, 367, 481
Tsp45I	GTSAC	2 cut(s)	299, 854
TspDTI	ATGAA	3 cut(s)	36, 102, 542
VpaK11BI	GGWCC	1 cut(s)	596
XagI	CCTNNNNNAGG	1 cut(s)	174
XapI	RAATTY	1 cut(s)	358
XceI	RCATGY	1 cut(s)	374
XmaJI	CCTAGG	1 cut(s)	170
XmnI	GAANNNNTTC	1 cut(s)	338
XspI	CTAG	3 cut(s)	71, 171, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.