Rroxscaffold_7G00184510

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0025880
Physical Location & Seq
Reverse (-)
23703488 .. 23707573
4086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00184510.1

Sequence Viewer

Length: 642 bp
ATGGAAGATCTCAAAGTTTTAGAAATTGAGTATATGTCTTTGTTGTCACTAGTGCCATCACTTGCAGTTTTAAAAAACCTTCAAAAAGTGCGTTTGGAATGGTGGAATCACTTGGGTGATGTATTTGTCATTAGGGAGCTAAAGACACTCATGATGCTCAGTTTGAGTGTGATATCAAGTTTATCCCAACTAGAAAAATTGTACATGTGGGAAAGCTTTGGCAATTGGGTGGTTGATAAACTAGCCCAGAGCGAAACAACCAATTGGATCTCTCAATTGGAGGCTGAGGAAAGAGCTGGACCCGAACAACCGGTTTTTGTGAGCTGCGGTGGACTCCATCGCATCCGGCCCTTGACGTTGACTGCAGCTCCCGGCTCAACTCCGGCGATTGAAGCTCCACGCTTAGTGAGCGAGTCCGCAGTTAGTACATCCGGTGTTTGGTCCGCCTTTAAGCTCTTGGAATCTCTGTACGCATTTCTCCTGCTCGGATCGACCAAGACCGGAGCCAACCGGTCACCGCAAAACAGCTCGGTCACTACCAACTTGGAACTCGGCGCTGAAATTCAAGTTCGGAGCGTCGGTGCAGTGGAACCGAGCCACTCTGCTCGGGTCTTGCGGCCGCCACGGTGCGGCTCTAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

213

Amino Acids

23.48

Weight (kDa)

6.33

Isoelectric Point (pI)

49.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025880)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_7G00184510 Rroxscaffold_7G00184520
rosa_rugosa Rorug06G0165100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 327, 417, 444, 518, 616, 620, 630
AclWI GGATC 2 cut(s) 275, 496
AcoI YGGCCR 1 cut(s) 617
AcsI RAATTY 1 cut(s) 561
AfaI GTAC 3 cut(s) 203, 427, 470
AfiI CCNNNNNNNGG 2 cut(s) 438, 629
AflIII ACRYGT 1 cut(s) 204
AgeI ACCGGT 2 cut(s) 310, 510
AgsI TTSAA 3 cut(s) 83, 392, 566
AhlI ACTAGT 1 cut(s) 49
AleI CACNNNNGTG 1 cut(s) 114
AluBI AGCT 8 cut(s) 139, 216, 296, 324, 368, 395, 454, 528
AluI AGCT 8 cut(s) 139, 216, 296, 324, 368, 395, 454, 528
AlwI GGATC 2 cut(s) 275, 496
Ama87I CYCGRG 1 cut(s) 606
AoxI GGCC 2 cut(s) 347, 617
ApeKI GCWGC 2 cut(s) 324, 365
ApoI RAATTY 1 cut(s) 561
AsiGI ACCGGT 2 cut(s) 310, 510
AspLEI GCGC 1 cut(s) 557
AspS9I GGNCC 3 cut(s) 299, 348, 441
AsuC2I CCSGG 1 cut(s) 372
AsuHPI GGTGA 2 cut(s) 128, 507
AvaI CYCGRG 1 cut(s) 606
AvaII GGWCC 2 cut(s) 299, 441
BbvCI CCTCAGC 1 cut(s) 285
BbvI GCAGC 2 cut(s) 311, 377
BccI CCATC 2 cut(s) 64, 345
BcnI CCSGG 1 cut(s) 372
BcuI ACTAGT 1 cut(s) 49
BfaI CTAG 4 cut(s) 50, 191, 242, 636
BfmI CTRYAG 1 cut(s) 363
BfoI RGCGCY 1 cut(s) 558
BglII AGATCT 1 cut(s) 7
BisI GCNGC 5 cut(s) 325, 366, 617, 620, 631
BlsI GCNGC 5 cut(s) 326, 367, 618, 621, 632
Bme1390I CCNGG 1 cut(s) 372
Bme18I GGWCC 2 cut(s) 299, 441
BmeT110I CYCGRG 1 cut(s) 606
BmgT120I GGNCC 3 cut(s) 299, 348, 441
BmiI GGNNCC 3 cut(s) 301, 505, 591
BmrFI CCNGG 1 cut(s) 372
BmsI GCATC 2 cut(s) 144, 351
Bpu10I CCTNAGC 1 cut(s) 285
BpuMI CCSGG 1 cut(s) 372
BsaJI CCNNGG 1 cut(s) 623
BsaWI WCCGGW 4 cut(s) 310, 431, 500, 510
BsaXI ACNNNNNCTCC 4 cut(s) 352, 382, 565, 595
Bsc4I CCNNNNNNNGG 2 cut(s) 438, 629
Bse118I RCCGGY 2 cut(s) 310, 510
BseDI CCNNGG 1 cut(s) 623
BseGI GGATG 2 cut(s) 342, 428
BseLI CCNNNNNNNGG 2 cut(s) 438, 629
BseMII CTCAG 2 cut(s) 172, 276
BseX3I CGGCCG 1 cut(s) 617
BseXI GCAGC 2 cut(s) 311, 377
BsgI GTGCAG 1 cut(s) 603
Bsh1285I CGRYCG 1 cut(s) 620
BshFI GGCC 2 cut(s) 349, 619
BshTI ACCGGT 2 cut(s) 310, 510
BsiEI CGRYCG 1 cut(s) 620
BsiHKCI CYCGRG 1 cut(s) 606
BsiSI CCGG 7 cut(s) 311, 346, 372, 383, 432, 501, 511
BslI CCNNNNNNNGG 2 cut(s) 438, 629
BsnI GGCC 2 cut(s) 349, 619
BsoBI CYCGRG 1 cut(s) 606
Bsp1407I TGTACA 1 cut(s) 201
Bsp143I GATC 3 cut(s) 7, 267, 488
BspACI CCGC 7 cut(s) 327, 417, 444, 518, 616, 620, 630
BspANI GGCC 2 cut(s) 349, 619
BspCNI CTCAG 2 cut(s) 171, 277
BspHI TCATGA 1 cut(s) 150
BspLI GGNNCC 3 cut(s) 301, 505, 591
BspMAI CTGCAG 1 cut(s) 367
BspPI GGATC 2 cut(s) 275, 496
BsrFI RCCGGY 2 cut(s) 310, 510
BsrGI TGTACA 1 cut(s) 201
BssAI RCCGGY 2 cut(s) 310, 510
BssECI CCNNGG 1 cut(s) 623
BssMI GATC 3 cut(s) 7, 267, 488
Bst4CI ACNGT 1 cut(s) 627
BstAUI TGTACA 1 cut(s) 201
BstDEI CTNAG 3 cut(s) 158, 285, 403
BstDSI CCRYGG 1 cut(s) 623
BstEII GGTNACC 1 cut(s) 513
BstF5I GGATG 2 cut(s) 342, 428
BstH2I RGCGCY 1 cut(s) 558
BstHHI GCGC 1 cut(s) 557
BstKTI GATC 3 cut(s) 10, 270, 491
BstMBI GATC 3 cut(s) 7, 267, 488
BstMCI CGRYCG 1 cut(s) 620
BstMWI GCNNNNNNNGC 2 cut(s) 392, 408
BstNSI RCATGY 1 cut(s) 208
BstPI GGTNACC 1 cut(s) 513
BstSCI CCNGG 1 cut(s) 370
BstSFI CTRYAG 1 cut(s) 363
BstV1I GCAGC 2 cut(s) 311, 377
BstX2I RGATCY 2 cut(s) 7, 267
BstYI RGATCY 2 cut(s) 7, 267
BstZI CGGCCG 1 cut(s) 617
BsuRI GGCC 2 cut(s) 349, 619
BtgI CCRYGG 1 cut(s) 623
BtgZI GCGATG 1 cut(s) 323
BtsCI GGATG 2 cut(s) 342, 428
BtsI GCAGTG 1 cut(s) 591
BtsIMutI CAGTG 1 cut(s) 591
CciI TCATGA 1 cut(s) 150
CciNI GCGGCCGC 1 cut(s) 617
CfoI GCGC 1 cut(s) 557
Cfr10I RCCGGY 2 cut(s) 310, 510
Cfr13I GGNCC 3 cut(s) 299, 348, 441
CseI GACGC 1 cut(s) 565
Csp6I GTAC 3 cut(s) 202, 426, 469
CspAI ACCGGT 2 cut(s) 310, 510
CviAII CATG 2 cut(s) 151, 205
CviQI GTAC 3 cut(s) 202, 426, 469
DdeI CTNAG 3 cut(s) 158, 285, 403
DpnI GATC 3 cut(s) 9, 269, 490
DpnII GATC 3 cut(s) 7, 267, 488
DraI TTTAAA 1 cut(s) 72
EaeI YGGCCR 1 cut(s) 617
EagI CGGCCG 1 cut(s) 617
EciI GGCGGA 1 cut(s) 433
EclXI CGGCCG 1 cut(s) 617
Eco32I GATATC 1 cut(s) 174
Eco47I GGWCC 2 cut(s) 299, 441
Eco52I CGGCCG 1 cut(s) 617
Eco88I CYCGRG 1 cut(s) 606
Eco91I GGTNACC 1 cut(s) 513
EcoO65I GGTNACC 1 cut(s) 513
EcoRV GATATC 1 cut(s) 174
FaeI CATG 2 cut(s) 154, 208
FaiI YATR 4 cut(s) 33, 35, 152, 206
FatI CATG 2 cut(s) 150, 204
Fnu4HI GCNGC 5 cut(s) 325, 366, 617, 620, 631
FokI GGATG 2 cut(s) 329, 415
Fsp4HI GCNGC 5 cut(s) 325, 366, 617, 620, 631
FspBI CTAG 4 cut(s) 50, 191, 242, 636
GlaI GCGC 1 cut(s) 556
GluI GCNGC 5 cut(s) 325, 366, 617, 620, 631
HaeII RGCGCY 1 cut(s) 558
HaeIII GGCC 2 cut(s) 349, 619
HapII CCGG 7 cut(s) 311, 346, 372, 383, 432, 501, 511
HgaI GACGC 1 cut(s) 565
HhaI GCGC 1 cut(s) 557
Hin1II CATG 2 cut(s) 154, 208
Hin6I GCGC 1 cut(s) 555
HinP1I GCGC 1 cut(s) 555
HincII GTYRAC 1 cut(s) 360
HindII GTYRAC 1 cut(s) 360
HindIII AAGCTT 1 cut(s) 214
HinfI GANTC 4 cut(s) 106, 333, 413, 461
HpaII CCGG 7 cut(s) 311, 346, 372, 383, 432, 501, 511
HphI GGTGA 2 cut(s) 128, 507
Hpy166II GTNNAC 2 cut(s) 332, 360
Hpy188I TCNGA 2 cut(s) 488, 573
Hpy188III TCNNGA 1 cut(s) 151
Hpy8I GTNNAC 2 cut(s) 332, 360
Hpy99I CGWCG 1 cut(s) 581
HpyAV CCTTC 1 cut(s) 89
HpyCH4III ACNGT 1 cut(s) 627
HpyCH4IV ACGT 1 cut(s) 356
HpyCH4V TGCA 3 cut(s) 65, 365, 584
HpyF10VI GCNNNNNNNGC 2 cut(s) 392, 408
HpyF3I CTNAG 3 cut(s) 158, 285, 403
HpySE526I ACGT 1 cut(s) 356
Hsp92II CATG 2 cut(s) 154, 208
HspAI GCGC 1 cut(s) 555
Kzo9I GATC 3 cut(s) 7, 267, 488
LmnI GCTCC 5 cut(s) 136, 373, 400, 503, 573
Lsp1109I GCAGC 2 cut(s) 311, 377
LweI GCATC 2 cut(s) 144, 351
MaeI CTAG 4 cut(s) 50, 191, 242, 636
MaeII ACGT 1 cut(s) 356
MaeIII GTNAC 3 cut(s) 45, 513, 532
MalI GATC 3 cut(s) 9, 269, 490
MboI GATC 3 cut(s) 7, 267, 488
MboII GAAGA 1 cut(s) 17
MfeI CAATTG 3 cut(s) 223, 262, 275
MflI RGATCY 2 cut(s) 7, 267
MluCI AATT 6 cut(s) 24, 197, 223, 262, 275, 561
MlyI GAGTC 2 cut(s) 327, 422
MnlI CCTC 2 cut(s) 274, 280
MseI TTAA 2 cut(s) 71, 450
MslI CAYNNNNRTG 1 cut(s) 114
MspI CCGG 7 cut(s) 311, 346, 372, 383, 432, 501, 511
MspR9I CCNGG 1 cut(s) 372
MunI CAATTG 3 cut(s) 223, 262, 275
MwoI GCNNNNNNNGC 2 cut(s) 392, 408
NciI CCSGG 1 cut(s) 372
NdeII GATC 3 cut(s) 7, 267, 488
NlaIII CATG 2 cut(s) 154, 208
NlaIV GGNNCC 3 cut(s) 301, 505, 591
NmeAIII GCCGAG 1 cut(s) 531
NmuCI GTSAC 3 cut(s) 45, 513, 532
NotI GCGGCCGC 1 cut(s) 617
NspI RCATGY 1 cut(s) 208
OliI CACNNNNGTG 1 cut(s) 114
PagI TCATGA 1 cut(s) 150
PciI ACATGT 1 cut(s) 204
PfeI GAWTC 2 cut(s) 106, 461
PinAI ACCGGT 2 cut(s) 310, 510
PkrI GCNGC 5 cut(s) 326, 367, 618, 621, 632
PleI GAGTC 2 cut(s) 327, 421
PpsI GAGTC 2 cut(s) 327, 421
PscI ACATGT 1 cut(s) 204
PspEI GGTNACC 1 cut(s) 513
PspN4I GGNNCC 3 cut(s) 301, 505, 591
PspPI GGNCC 3 cut(s) 299, 348, 441
PstI CTGCAG 1 cut(s) 367
PsuI RGATCY 2 cut(s) 7, 267
RsaI GTAC 3 cut(s) 203, 427, 470
RsaNI GTAC 3 cut(s) 202, 426, 469
RseI CAYNNNNRTG 1 cut(s) 114
SaqAI TTAA 2 cut(s) 71, 450
SatI GCNGC 5 cut(s) 325, 366, 617, 620, 631
Sau3AI GATC 3 cut(s) 7, 267, 488
Sau96I GGNCC 3 cut(s) 299, 348, 441
SchI GAGTC 2 cut(s) 327, 422
ScrFI CCNGG 1 cut(s) 372
SfaNI GCATC 2 cut(s) 144, 351
SfcI CTRYAG 1 cut(s) 363
SinI GGWCC 2 cut(s) 299, 441
SmiMI CAYNNNNRTG 1 cut(s) 114
SpeI ACTAGT 1 cut(s) 49
Sse9I AATT 6 cut(s) 24, 197, 223, 262, 275, 561
SsiI CCGC 7 cut(s) 327, 417, 444, 518, 616, 620, 630
SspMI CTAG 4 cut(s) 50, 191, 242, 636
StyD4I CCNGG 1 cut(s) 370
TaaI ACNGT 1 cut(s) 627
TaiI ACGT 1 cut(s) 359
TaqI TCGA 1 cut(s) 491
TaqII GACCGA 1 cut(s) 520
TasI AATT 6 cut(s) 24, 197, 223, 262, 275, 561
TatI WGTACW 2 cut(s) 201, 425
TauI GCSGC 3 cut(s) 619, 622, 633
TfiI GAWTC 2 cut(s) 106, 461
Tru1I TTAA 2 cut(s) 71, 450
Tru9I TTAA 2 cut(s) 71, 450
TscAI CASTG 1 cut(s) 591
TseFI GTSAC 3 cut(s) 45, 513, 532
TseI GCWGC 2 cut(s) 324, 365
Tsp45I GTSAC 3 cut(s) 45, 513, 532
TspRI CASTG 1 cut(s) 591
VpaK11BI GGWCC 2 cut(s) 299, 441
XapI RAATTY 1 cut(s) 561
XceI RCATGY 1 cut(s) 208
XspI CTAG 4 cut(s) 50, 191, 242, 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.