Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0032171

Physical Location & Seq

Genomic Coordinates Reverse (-)

34586750 .. 34600731

Gene Structure 13982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00193220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAGTGACTACAAAATCATTGATCACCGCAATGGTCATTCTCCTTCAATTGATGAAAATAGAGTGGTTGCTACCATAAACCGGAGCGTTAATGAAACCATAGCTGCTCAGCGAGCATTGCCATGTCATGTGGTTCGATTGGATTCCAAATGGCCGATTGATCCCGAGCATCTCTTTGTTGGGCCAAGAATTGGAGAAGGAGCTCTTGGATATTCATGGGTAAGGACTCAAAACTTTGCCCCTTTGTCCGAGTTAACGAAGACTAGGCCCAACAAAATTCGAAGGATTAAAAATGCTAGGAAGCTTGATGTTGTGTTCTTCCCGCAGCTCCTTGTATATGCAGGCAGTGAATTGAACGTCCCAAGAGAGGCTTGGCAAGATGCATGTGGGGTGGGAGCTAGAAAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

136

Amino Acids

15.33

Weight (kDa)

9.69

Isoelectric Point (pI)

38.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0032171)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_6G00395210 Rroxscaffold_7G00193220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	191
AciI	CCGC	2 cut(s)	28, 323
AclWI	GGATC	1 cut(s)	155
AcoI	YGGCCR	1 cut(s)	152
AcsI	RAATTY	1 cut(s)	276
AfiI	CCNNNNNNNGG	3 cut(s)	81, 191, 367
AgsI	TTSAA	2 cut(s)	48, 355
AjuI	GAANNNNNNNTTGG	2 cut(s)	189, 221
AluBI	AGCT	5 cut(s)	104, 203, 304, 328, 398
AluI	AGCT	5 cut(s)	104, 203, 304, 328, 398
Alw21I	GWGCWC	1 cut(s)	205
AlwI	GGATC	1 cut(s)	155
Ama87I	CYCGRG	1 cut(s)	164
AoxI	GGCC	3 cut(s)	152, 182, 266
ApeKI	GCWGC	2 cut(s)	104, 325
ApoI	RAATTY	1 cut(s)	276
AspS9I	GGNCC	2 cut(s)	182, 267
AsuHPI	GGTGA	1 cut(s)	17
AsuII	TTCGAA	1 cut(s)	280
AvaI	CYCGRG	1 cut(s)	164
BanII	GRGCYC	1 cut(s)	205
BbsI	GAAGAC	1 cut(s)	266
Bbv12I	GWGCWC	1 cut(s)	205
BbvI	GCAGC	2 cut(s)	91, 337
BclI	TGATCA	1 cut(s)	22
BfaI	CTAG	3 cut(s)	264, 297, 399
BisI	GCNGC	2 cut(s)	105, 326
BlpI	GCTNAGC	1 cut(s)	108
BlsI	GCNGC	2 cut(s)	106, 327
BmeT110I	CYCGRG	1 cut(s)	164
BmgT120I	GGNCC	2 cut(s)	182, 267
BmsI	GCATC	2 cut(s)	178, 370
BpiI	GAAGAC	1 cut(s)	266
Bpu1102I	GCTNAGC	1 cut(s)	108
Bpu14I	TTCGAA	1 cut(s)	280
BsaWI	WCCGGW	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	3 cut(s)	81, 191, 367
Bse3DI	GCAATG	2 cut(s)	37, 116
BseLI	CCNNNNNNNGG	3 cut(s)	81, 191, 367
BseMI	GCAATG	2 cut(s)	37, 116
BseMII	CTCAG	1 cut(s)	122
BseXI	GCAGC	2 cut(s)	91, 337
BshFI	GGCC	3 cut(s)	154, 184, 268
BsiHKAI	GWGCWC	1 cut(s)	205
BsiHKCI	CYCGRG	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	82
BslFI	GGGAC	1 cut(s)	344
BslI	CCNNNNNNNGG	3 cut(s)	81, 191, 367
BsmFI	GGGAC	1 cut(s)	344
BsnI	GGCC	3 cut(s)	154, 184, 268
BsoBI	CYCGRG	1 cut(s)	164
Bsp119I	TTCGAA	1 cut(s)	280
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp143I	GATC	2 cut(s)	22, 160
Bsp1720I	GCTNAGC	1 cut(s)	108
BspACI	CCGC	2 cut(s)	28, 323
BspANI	GGCC	3 cut(s)	154, 184, 268
BspCNI	CTCAG	1 cut(s)	121
BspPI	GGATC	1 cut(s)	155
BspT104I	TTCGAA	1 cut(s)	280
BsrDI	GCAATG	2 cut(s)	37, 116
BssMI	GATC	2 cut(s)	22, 160
BstBI	TTCGAA	1 cut(s)	280
BstC8I	GCNNGC	2 cut(s)	114, 343
BstDEI	CTNAG	1 cut(s)	108
BstKTI	GATC	2 cut(s)	25, 163
BstMBI	GATC	2 cut(s)	22, 160
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 118, 404
BstNSI	RCATGY	1 cut(s)	387
BstV1I	GCAGC	2 cut(s)	91, 337
BstV2I	GAAGAC	1 cut(s)	266
BsuRI	GGCC	3 cut(s)	154, 184, 268
BtsI	GCAGTG	1 cut(s)	352
BtsIMutI	CAGTG	1 cut(s)	352
Cac8I	GCNNGC	2 cut(s)	114, 343
Cfr13I	GGNCC	2 cut(s)	182, 267
CviAII	CATG	5 cut(s)	123, 128, 216, 384, 408
CviJI	RGCY	9 cut(s)	104, 154, 184, 203, 268, 304, 328, 371, 398
CviKI_1	RGCY	9 cut(s)	104, 154, 184, 203, 268, 304, 328, 371, 398
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	2 cut(s)	24, 162
DpnII	GATC	2 cut(s)	22, 160
EaeI	YGGCCR	1 cut(s)	152
Ecl136II	GAGCTC	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	205
Eco53kI	GAGCTC	1 cut(s)	203
Eco88I	CYCGRG	1 cut(s)	164
EcoICRI	GAGCTC	1 cut(s)	203
EcoT22I	ATGCAT	1 cut(s)	385
EcoT38I	GRGCYC	1 cut(s)	205
FaeI	CATG	5 cut(s)	126, 131, 219, 387, 411
FaiI	YATR	9 cut(s)	77, 101, 124, 129, 217, 337, 339, 385, 409
FalI	AAGNNNNNCTT	4 cut(s)	189, 221, 355, 387
FaqI	GGGAC	1 cut(s)	344
FatI	CATG	5 cut(s)	122, 127, 215, 383, 407
FauI	CCCGC	1 cut(s)	330
FbaI	TGATCA	1 cut(s)	22
Fnu4HI	GCNGC	2 cut(s)	105, 326
FriOI	GRGCYC	1 cut(s)	205
Fsp4HI	GCNGC	2 cut(s)	105, 326
FspBI	CTAG	3 cut(s)	264, 297, 399
GluI	GCNGC	2 cut(s)	105, 326
HaeIII	GGCC	3 cut(s)	154, 184, 268
HapII	CCGG	1 cut(s)	82
Hin1II	CATG	5 cut(s)	126, 131, 219, 387, 411
HincII	GTYRAC	1 cut(s)	255
HindII	GTYRAC	1 cut(s)	255
HindIII	AAGCTT	1 cut(s)	302
HinfI	GANTC	2 cut(s)	143, 226
HpaI	GTTAAC	1 cut(s)	255
HpaII	CCGG	1 cut(s)	82
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	1 cut(s)	255
Hpy188I	TCNGA	1 cut(s)	250
Hpy188III	TCNNGA	1 cut(s)	164
Hpy8I	GTNNAC	1 cut(s)	255
HpyAV	CCTTC	3 cut(s)	54, 191, 276
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	2 cut(s)	341, 383
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 118, 404
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	1 cut(s)	357
Hsp92II	CATG	5 cut(s)	126, 131, 219, 387, 411
Ksp22I	TGATCA	1 cut(s)	22
KspAI	GTTAAC	1 cut(s)	255
Kzo9I	GATC	2 cut(s)	22, 160
LmnI	GCTCC	4 cut(s)	84, 200, 333, 395
LpnPI	CCDG	2 cut(s)	95, 327
Lsp1109I	GCAGC	2 cut(s)	91, 337
LweI	GCATC	2 cut(s)	178, 370
MaeI	CTAG	3 cut(s)	264, 297, 399
MaeII	ACGT	1 cut(s)	357
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	2 cut(s)	24, 162
MboI	GATC	2 cut(s)	22, 160
MboII	GAAGA	2 cut(s)	271, 310
MfeI	CAATTG	1 cut(s)	48
MhlI	GDGCHC	1 cut(s)	205
MluCI	AATT	4 cut(s)	48, 189, 276, 350
MlyI	GAGTC	1 cut(s)	220
MnlI	CCTC	1 cut(s)	361
Mph1103I	ATGCAT	1 cut(s)	385
MseI	TTAA	3 cut(s)	90, 254, 288
MslI	CAYNNNNRTG	2 cut(s)	30, 121
MspI	CCGG	1 cut(s)	82
MunI	CAATTG	1 cut(s)	48
MwoI	GCNNNNNNNGC	3 cut(s)	113, 118, 404
NdeII	GATC	2 cut(s)	22, 160
NlaIII	CATG	5 cut(s)	126, 131, 219, 387, 411
NmuCI	GTSAC	1 cut(s)	5
NsiI	ATGCAT	1 cut(s)	385
NspI	RCATGY	1 cut(s)	387
NspV	TTCGAA	1 cut(s)	280
PfeI	GAWTC	1 cut(s)	143
PflMI	CCANNNNNTGG	1 cut(s)	191
PkrI	GCNGC	2 cut(s)	106, 327
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
Psp124BI	GAGCTC	1 cut(s)	205
PspPI	GGNCC	2 cut(s)	182, 267
RseI	CAYNNNNRTG	2 cut(s)	30, 121
SacI	GAGCTC	1 cut(s)	205
SaqAI	TTAA	3 cut(s)	90, 254, 288
SatI	GCNGC	2 cut(s)	105, 326
Sau3AI	GATC	2 cut(s)	22, 160
Sau96I	GGNCC	2 cut(s)	182, 267
SchI	GAGTC	1 cut(s)	220
SduI	GDGCHC	1 cut(s)	205
SetI	ASST	6 cut(s)	106, 205, 306, 330, 360, 400
SfaNI	GCATC	2 cut(s)	178, 370
SfuI	TTCGAA	1 cut(s)	280
SmiMI	CAYNNNNRTG	2 cut(s)	30, 121
Sse9I	AATT	4 cut(s)	48, 189, 276, 350
SsiI	CCGC	2 cut(s)	28, 323
SspMI	CTAG	3 cut(s)	264, 297, 399
SstI	GAGCTC	1 cut(s)	205
TaiI	ACGT	1 cut(s)	360
TaqI	TCGA	2 cut(s)	136, 280
TasI	AATT	4 cut(s)	48, 189, 276, 350
TfiI	GAWTC	1 cut(s)	143
Tru1I	TTAA	3 cut(s)	90, 254, 288
Tru9I	TTAA	3 cut(s)	90, 254, 288
TscAI	CASTG	1 cut(s)	352
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	2 cut(s)	104, 325
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	3 cut(s)	69, 108, 204
TspRI	CASTG	1 cut(s)	352
Van91I	CCANNNNNTGG	1 cut(s)	191
XapI	RAATTY	1 cut(s)	276
XceI	RCATGY	1 cut(s)	387
XcmI	CCANNNNNNNNNTGG	1 cut(s)	369
XspI	CTAG	3 cut(s)	264, 297, 399
Zsp2I	ATGCAT	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.