Rroxscaffold_7G00208340

Condensin II non structural maintenance of chromosomes subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0025296
Physical Location & Seq
Reverse (-)
58347852 .. 58349714
1863 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00208340.1

Sequence Viewer

Length: 552 bp
ATGCTGGGAGTTGTAGCCCTGCTTAGGAACCGAAATGAGACCACCATATGGATTCAAATCCCGAAGAGGAGAAGCATCAACTGCTCTCAAAGCTTTAGATTCTCGCCTGTCTTCGGGCATCCGGCTAACGCGTTCTCACCGTTGGATTTGTTACCGGGAGTTCAAGCGCTTCACGACAATTTGATAATTCTGGAGTCGGACTCGGCGATTGCAAATTTGTGGGAGCAATGGTGGAAGGATGAGTTGACGGGCCGAGAATCACTGATTTCTAAGTCGCTTCCTTTCTTGCTCTCGAGATTTCTCACTCTCAACAAGAAGATAGAAAAGTCCATTGCTTCTCGGCATAATACCGCTTGTGAAGCTTCTCCATCTTATGATGGCATTGCAATGCGGTTTTTGCCTACCAGAGCGAGCCGCGCAACCGGCGACAAGTCTTTGGTGGCAGCCACGTTGTCCCAATCGGTGGTCTTGAGATTGGTGTGGCAGAGAGCGTACCTGCGGTCGCATGATACTCTAAAATCAAGCGCTCAACTTAACCATGCAAAAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Condensin2nSMC

Protein Analysis

183

Amino Acids

20.58

Weight (kDa)

10.08

Isoelectric Point (pI)

62.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025296)

Species Orthologous Gene IDs
rosa_laevigata RLG00000014662
rosa_multiflora Rmu_sc0000659.1_g000046
rosa_roxburghii Rroxscaffold_7G00208340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 504
AccB7I CCANNNNNTGG 2 cut(s) 48, 463
AccII CGCG 2 cut(s) 131, 417
AciI CCGC 4 cut(s) 351, 391, 415, 499
AcsI RAATTY 1 cut(s) 214
AfaI GTAC 1 cut(s) 494
AfeI AGCGCT 2 cut(s) 168, 526
AfiI CCNNNNNNNGG 4 cut(s) 24, 48, 113, 463
AflIII ACRYGT 1 cut(s) 129
AgsI TTSAA 2 cut(s) 56, 164
AluBI AGCT 2 cut(s) 93, 362
AluI AGCT 2 cut(s) 93, 362
Alw26I GTCTC 1 cut(s) 32
Ama87I CYCGRG 1 cut(s) 292
Aor51HI AGCGCT 2 cut(s) 168, 526
AoxI GGCC 1 cut(s) 250
ApeKI GCWGC 1 cut(s) 443
ApoI RAATTY 1 cut(s) 214
AspLEI GCGC 3 cut(s) 169, 419, 527
AspS9I GGNCC 1 cut(s) 250
AsuC2I CCSGG 1 cut(s) 156
AsuHPI GGTGA 1 cut(s) 129
AvaI CYCGRG 1 cut(s) 292
BbsI GAAGAC 1 cut(s) 103
BbvI GCAGC 1 cut(s) 455
BccI CCATC 2 cut(s) 371, 376
BcnI CCSGG 1 cut(s) 156
BcoDI GTCTC 1 cut(s) 32
BfoI RGCGCY 2 cut(s) 170, 528
BfuAI ACCTGC 1 cut(s) 504
BisI GCNGC 2 cut(s) 415, 444
BlsI GCNGC 2 cut(s) 416, 445
Bme1390I CCNGG 1 cut(s) 156
BmeT110I CYCGRG 1 cut(s) 292
BmgT120I GGNCC 1 cut(s) 250
BmiI GGNNCC 1 cut(s) 29
BmrFI CCNGG 1 cut(s) 156
BmsI GCATC 2 cut(s) 84, 127
BpiI GAAGAC 1 cut(s) 103
BplI GAGNNNNNCTC 2 cut(s) 185, 217
BpmI CTGGAG 1 cut(s) 212
Bpu10I CCTNAGC 1 cut(s) 23
BpuEI CTTGAG 1 cut(s) 490
BpuMI CCSGG 1 cut(s) 156
BsaBI GATNNNNATC 1 cut(s) 56
BsaI GGTCTC 1 cut(s) 32
BsaXI ACNNNNNCTCC 2 cut(s) 215, 245
Bsc4I CCNNNNNNNGG 4 cut(s) 24, 48, 113, 463
Bse118I RCCGGY 1 cut(s) 422
Bse3DI GCAATG 4 cut(s) 233, 330, 381, 393
Bse8I GATNNNNATC 1 cut(s) 56
BseGI GGATG 2 cut(s) 118, 244
BseJI GATNNNNATC 1 cut(s) 56
BseLI CCNNNNNNNGG 4 cut(s) 24, 48, 113, 463
BseMI GCAATG 4 cut(s) 233, 330, 381, 393
BseRI GAGGAG 1 cut(s) 82
BseXI GCAGC 1 cut(s) 455
BseYI CCCAGC 1 cut(s) 4
Bsh1236I CGCG 2 cut(s) 131, 417
Bsh1285I CGRYCG 1 cut(s) 503
BshFI GGCC 1 cut(s) 252
BsiEI CGRYCG 1 cut(s) 503
BsiHKCI CYCGRG 1 cut(s) 292
BsiSI CCGG 3 cut(s) 122, 155, 423
BslFI GGGAC 1 cut(s) 439
BslI CCNNNNNNNGG 4 cut(s) 24, 48, 113, 463
BsmAI GTCTC 1 cut(s) 32
BsmFI GGGAC 1 cut(s) 439
BsnI GGCC 1 cut(s) 252
Bso31I GGTCTC 1 cut(s) 32
BsoBI CYCGRG 1 cut(s) 292
BspACI CCGC 4 cut(s) 351, 391, 415, 499
BspANI GGCC 1 cut(s) 252
BspFNI CGCG 2 cut(s) 131, 417
BspLI GGNNCC 1 cut(s) 29
BspMI ACCTGC 1 cut(s) 504
BspTNI GGTCTC 1 cut(s) 32
BsrDI GCAATG 4 cut(s) 233, 330, 381, 393
BsrFI RCCGGY 1 cut(s) 422
BssAI RCCGGY 1 cut(s) 422
Bst4CI ACNGT 1 cut(s) 141
Bst6I CTCTTC 1 cut(s) 59
BstAPI GCANNNNNTGC 1 cut(s) 81
BstC8I GCNNGC 1 cut(s) 412
BstDEI CTNAG 2 cut(s) 23, 270
BstF5I GGATG 2 cut(s) 118, 244
BstFNI CGCG 2 cut(s) 131, 417
BstH2I RGCGCY 2 cut(s) 170, 528
BstHHI GCGC 3 cut(s) 169, 419, 527
BstMAI GTCTC 1 cut(s) 32
BstMCI CGRYCG 1 cut(s) 503
BstMWI GCNNNNNNNGC 6 cut(s) 81, 90, 359, 397, 416, 423
BstSCI CCNGG 1 cut(s) 154
BstUI CGCG 2 cut(s) 131, 417
BstV1I GCAGC 1 cut(s) 455
BstV2I GAAGAC 1 cut(s) 103
BsuRI GGCC 1 cut(s) 252
BtsCI GGATG 2 cut(s) 118, 244
BtsIMutI CAGTG 1 cut(s) 260
BveI ACCTGC 1 cut(s) 504
Cac8I GCNNGC 1 cut(s) 412
CfoI GCGC 3 cut(s) 169, 419, 527
Cfr10I RCCGGY 1 cut(s) 422
Cfr13I GGNCC 1 cut(s) 250
Csp6I GTAC 1 cut(s) 493
CviAII CATG 2 cut(s) 506, 539
CviJI RGCY 7 cut(s) 17, 93, 125, 252, 362, 414, 446
CviKI_1 RGCY 7 cut(s) 17, 93, 125, 252, 362, 414, 446
CviQI GTAC 1 cut(s) 493
DdeI CTNAG 2 cut(s) 23, 270
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
Eco31I GGTCTC 1 cut(s) 32
Eco47III AGCGCT 2 cut(s) 168, 526
Eco88I CYCGRG 1 cut(s) 292
FaeI CATG 2 cut(s) 509, 542
FaiI YATR 6 cut(s) 47, 49, 345, 375, 507, 540
FaqI GGGAC 1 cut(s) 439
FatI CATG 2 cut(s) 505, 538
FauNDI CATATG 1 cut(s) 47
Fnu4HI GCNGC 2 cut(s) 415, 444
FokI GGATG 2 cut(s) 105, 251
Fsp4HI GCNGC 2 cut(s) 415, 444
GlaI GCGC 3 cut(s) 168, 418, 526
GluI GCNGC 2 cut(s) 415, 444
GsaI CCCAGC 1 cut(s) 8
GsuI CTGGAG 1 cut(s) 212
HaeII RGCGCY 2 cut(s) 170, 528
HaeIII GGCC 1 cut(s) 252
HapII CCGG 3 cut(s) 122, 155, 423
HhaI GCGC 3 cut(s) 169, 419, 527
Hin1II CATG 2 cut(s) 509, 542
Hin6I GCGC 3 cut(s) 167, 417, 525
HinP1I GCGC 3 cut(s) 167, 417, 525
HincII GTYRAC 1 cut(s) 246
HindII GTYRAC 1 cut(s) 246
HindIII AAGCTT 2 cut(s) 91, 360
HinfI GANTC 5 cut(s) 52, 99, 194, 200, 257
HpaII CCGG 3 cut(s) 122, 155, 423
HphI GGTGA 1 cut(s) 129
Hpy166II GTNNAC 1 cut(s) 246
Hpy188I TCNGA 1 cut(s) 199
Hpy188III TCNNGA 6 cut(s) 61, 173, 191, 292, 294, 469
Hpy8I GTNNAC 1 cut(s) 246
HpyAV CCTTC 1 cut(s) 229
HpyCH4III ACNGT 1 cut(s) 141
HpyCH4IV ACGT 1 cut(s) 449
HpyCH4V TGCA 3 cut(s) 212, 386, 542
HpyF10VI GCNNNNNNNGC 6 cut(s) 81, 90, 359, 397, 416, 423
HpyF3I CTNAG 2 cut(s) 23, 270
HpySE526I ACGT 1 cut(s) 449
Hsp92II CATG 2 cut(s) 509, 542
HspAI GCGC 3 cut(s) 167, 417, 525
LmnI GCTCC 1 cut(s) 223
LpnPI CCDG 8 cut(s) 32, 120, 135, 168, 176, 418, 436, 509
Lsp1109I GCAGC 1 cut(s) 455
LweI GCATC 2 cut(s) 84, 127
MaeII ACGT 1 cut(s) 449
MaeIII GTNAC 1 cut(s) 150
MboII GAAGA 3 cut(s) 76, 103, 328
MluCI AATT 3 cut(s) 178, 186, 214
MluI ACGCGT 1 cut(s) 129
MlyI GAGTC 2 cut(s) 194, 203
MmeI TCCRAC 2 cut(s) 123, 177
MnlI CCTC 1 cut(s) 60
MseI TTAA 1 cut(s) 534
MslI CAYNNNNRTG 1 cut(s) 386
MspI CCGG 3 cut(s) 122, 155, 423
MspR9I CCNGG 1 cut(s) 156
MvnI CGCG 2 cut(s) 131, 417
MwoI GCNNNNNNNGC 6 cut(s) 81, 90, 359, 397, 416, 423
NciI CCSGG 1 cut(s) 156
NdeI CATATG 1 cut(s) 47
NlaIII CATG 2 cut(s) 509, 542
NlaIV GGNNCC 1 cut(s) 29
NmeAIII GCCGAG 3 cut(s) 182, 278, 319
PaeR7I CTCGAG 1 cut(s) 292
PcsI WCGNNNNNNNCGW 1 cut(s) 203
PfeI GAWTC 3 cut(s) 52, 99, 257
PflMI CCANNNNNTGG 2 cut(s) 48, 463
PkrI GCNGC 2 cut(s) 416, 445
PleI GAGTC 2 cut(s) 194, 202
PpsI GAGTC 2 cut(s) 194, 202
PspFI CCCAGC 1 cut(s) 4
PspN4I GGNNCC 1 cut(s) 29
PspPI GGNCC 1 cut(s) 250
RsaI GTAC 1 cut(s) 494
RsaNI GTAC 1 cut(s) 493
RseI CAYNNNNRTG 1 cut(s) 386
SaqAI TTAA 1 cut(s) 534
SatI GCNGC 2 cut(s) 415, 444
Sau96I GGNCC 1 cut(s) 250
SchI GAGTC 2 cut(s) 194, 203
ScrFI CCNGG 1 cut(s) 156
SetI ASST 4 cut(s) 95, 364, 452, 498
SfaNI GCATC 2 cut(s) 84, 127
Sfr274I CTCGAG 1 cut(s) 292
SlaI CTCGAG 1 cut(s) 292
SmiMI CAYNNNNRTG 1 cut(s) 386
SmlI CTYRAG 2 cut(s) 292, 469
SmoI CTYRAG 2 cut(s) 292, 469
Sse9I AATT 3 cut(s) 178, 186, 214
SsiI CCGC 4 cut(s) 351, 391, 415, 499
StyD4I CCNGG 1 cut(s) 154
TaaI ACNGT 1 cut(s) 141
TaiI ACGT 1 cut(s) 452
TaqI TCGA 1 cut(s) 293
TasI AATT 3 cut(s) 178, 186, 214
TauI GCSGC 1 cut(s) 417
TfiI GAWTC 3 cut(s) 52, 99, 257
Tru1I TTAA 1 cut(s) 534
Tru9I TTAA 1 cut(s) 534
TscAI CASTG 1 cut(s) 267
TseI GCWGC 1 cut(s) 443
TspRI CASTG 1 cut(s) 267
Van91I CCANNNNNTGG 2 cut(s) 48, 463
XapI RAATTY 1 cut(s) 214
XhoI CTCGAG 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.