Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0015237

Physical Location & Seq

Genomic Coordinates Reverse (-)

47420124 .. 47422464

Gene Structure 2341 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0358100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCAATATCATCACTCTCATTGAGCTGGGTTTCCACTACCTTACCTGACAATAAGTTGAATTTGCTCAATCATAATGAGGTTCCGAAAGCTACCGCTGCTTACTTTTCCGGTAAAACCATCACATGCTCCAGTGAGACAGCTTCCAGTGAAGAAAGCTATTACAAGAGAAGGCCACTACTCTTGGGAGTTGGAGCACTAACTACAAGTCTACTTCATACAAGTTCCCTCTTGGCTGAAGGAATACCTGACAAGTTCCGAGGTTATGTTGACAAAGAAGATGGCTATTCATATTATTACCCCTCTGATTGGAGGGATTTTGACTTCAGGGCACATGACTCTGCTTTCAAGGACCGATATATGCAACTTCACAATGTTAGAGTGAGATTTATACCCACAGACAAAAGTGACATCCATGATTTGGGTCCATTGGAAGAGGTTGTTCCCTATTTGGTGAGACACAAATTTGCTGCACCAAACCAAGTAGAAAAGATATTCGACATGCAGGAGAAAACTATAGATGGGAAGAGCTATTACACCTTCGAGTATGGACTCACATCTCCGAACTTCTCTACCACTTCCTTTGCGACCATAGCCATTGGAAATGGGAGATATTACACCCTAATCGTCGGAGCAAATGAGAGACGGTGGAAAAGATACCGCAACCAGCTTAAAATGGTTGCAGACTCTTTCAGAATGCTTGACATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

236

Amino Acids

27.08

Weight (kDa)

7.79

Isoelectric Point (pI)

36.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbP	PF01789	85 - 232	1.1e-43	PsbP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40230
fragaria_vesca	FvH4_7g24780
malus_domestica	MD01G1155600.v1.1 MD07G1224500.v1.1
prunus_persica	Prupe.2G253100_v2.0.a1
pyrus_communis	pycom07g20300
rosa_chinensis	RchiOBHm_Chr1g0370641
rosa_laevigata	RLG00000027022
rosa_multiflora	Rmu_sc0002021.1_g000009
rosa_roxburghii	Rroxscaffold_4G00286380
rosa_rugosa	Rorug01G0358100
rosa_samantha	Rh1AG367700 Rh1BG331100 Rh1CG345200 Rh1DG362500
rosa_wichuraiana	Rw1G032350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	421
AccI	GTMKAC	1 cut(s)	211
AciI	CCGC	2 cut(s)	96, 661
AcsI	RAATTY	2 cut(s)	61, 464
AcuI	CTGAAG	2 cut(s)	258, 310
AfiI	CCNNNNNNNGG	2 cut(s)	309, 421
AgsI	TTSAA	2 cut(s)	61, 349
AluBI	AGCT	6 cut(s)	27, 92, 143, 159, 531, 670
AluI	AGCT	6 cut(s)	27, 92, 143, 159, 531, 670
Alw21I	GWGCWC	1 cut(s)	199
Alw26I	GTCTC	3 cut(s)	131, 451, 637
AoxI	GGCC	1 cut(s)	173
ApeKI	GCWGC	2 cut(s)	98, 470
ApoI	RAATTY	2 cut(s)	61, 464
AspS9I	GGNCC	2 cut(s)	352, 425
AsuHPI	GGTGA	1 cut(s)	466
AvaII	GGWCC	2 cut(s)	352, 425
BaeGI	GKGCMC	1 cut(s)	334
BarI	GAAGNNNNNNTAC	2 cut(s)	518, 550
Bbv12I	GWGCWC	1 cut(s)	199
BbvI	GCAGC	2 cut(s)	85, 457
BccI	CCATC	3 cut(s)	128, 275, 515
BcoDI	GTCTC	3 cut(s)	131, 451, 637
BfmI	CTRYAG	1 cut(s)	516
BisI	GCNGC	2 cut(s)	99, 471
BlsI	GCNGC	2 cut(s)	100, 472
Bme18I	GGWCC	2 cut(s)	352, 425
BmgT120I	GGNCC	2 cut(s)	352, 425
BmiI	GGNNCC	2 cut(s)	84, 426
BpmI	CTGGAG	1 cut(s)	115
BsaJI	CCNNGG	1 cut(s)	259
BsaWI	WCCGGW	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	2 cut(s)	309, 421
Bse1I	ACTGG	2 cut(s)	132, 147
BseDI	CCNNGG	1 cut(s)	259
BseGI	GGATG	1 cut(s)	411
BseLI	CCNNNNNNNGG	2 cut(s)	309, 421
BseNI	ACTGG	2 cut(s)	132, 147
BseSI	GKGCMC	1 cut(s)	334
BseXI	GCAGC	2 cut(s)	85, 457
BseYI	CCCAGC	1 cut(s)	27
BsgI	GTGCAG	1 cut(s)	456
BshFI	GGCC	1 cut(s)	175
BsiHKAI	GWGCWC	1 cut(s)	199
BsiSI	CCGG	1 cut(s)	111
BslI	CCNNNNNNNGG	2 cut(s)	309, 421
BsmAI	GTCTC	3 cut(s)	131, 451, 637
BsmBI	CGTCTC	1 cut(s)	637
BsmI	GAATGC	1 cut(s)	702
BsnI	GGCC	1 cut(s)	175
Bsp1286I	GDGCHC	2 cut(s)	199, 334
BspACI	CCGC	2 cut(s)	96, 661
BspANI	GGCC	1 cut(s)	175
BspLI	GGNNCC	2 cut(s)	84, 426
BspQI	GCTCTTC	1 cut(s)	521
BsrI	ACTGG	2 cut(s)	132, 147
BssECI	CCNNGG	1 cut(s)	259
Bst4CI	ACNGT	1 cut(s)	648
Bst6I	CTCTTC	2 cut(s)	429, 521
BstF5I	GGATG	1 cut(s)	411
BstMAI	GTCTC	3 cut(s)	131, 451, 637
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 593
BstNSI	RCATGY	2 cut(s)	129, 505
BstSFI	CTRYAG	1 cut(s)	516
BstSLI	GKGCMC	1 cut(s)	334
BstV1I	GCAGC	2 cut(s)	85, 457
BsuRI	GGCC	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	411
BtsIMutI	CAGTG	2 cut(s)	139, 154
Cfr13I	GGNCC	2 cut(s)	352, 425
CspCI	CAANNNNNGTGG	4 cut(s)	165, 200, 565, 600
CviAII	CATG	4 cut(s)	126, 335, 416, 502
Eam1104I	CTCTTC	2 cut(s)	429, 521
EarI	CTCTTC	2 cut(s)	429, 521
Eco47I	GGWCC	2 cut(s)	352, 425
Eco57I	CTGAAG	2 cut(s)	258, 310
Esp3I	CGTCTC	1 cut(s)	637
FaeI	CATG	4 cut(s)	129, 338, 419, 505
FatI	CATG	4 cut(s)	125, 334, 415, 501
FblI	GTMKAC	1 cut(s)	211
Fnu4HI	GCNGC	2 cut(s)	99, 471
FokI	GGATG	1 cut(s)	398
Fsp4HI	GCNGC	2 cut(s)	99, 471
GluI	GCNGC	2 cut(s)	99, 471
GsaI	CCCAGC	1 cut(s)	31
GsuI	CTGGAG	1 cut(s)	115
HaeIII	GGCC	1 cut(s)	175
HapII	CCGG	1 cut(s)	111
Hin1II	CATG	4 cut(s)	129, 338, 419, 505
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HinfI	GANTC	3 cut(s)	338, 552, 686
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	1 cut(s)	466
Hpy166II	GTNNAC	2 cut(s)	212, 271
Hpy188I	TCNGA	6 cut(s)	87, 260, 307, 564, 632, 695
Hpy8I	GTNNAC	2 cut(s)	212, 271
Hpy99I	CGWCG	1 cut(s)	632
HpyAV	CCTTC	3 cut(s)	165, 233, 550
HpyCH4III	ACNGT	1 cut(s)	648
HpyCH4V	TGCA	4 cut(s)	364, 473, 505, 683
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 593
Hsp92II	CATG	4 cut(s)	129, 338, 419, 505
LguI	GCTCTTC	1 cut(s)	521
LmnI	GCTCC	3 cut(s)	134, 194, 632
LpnPI	CCDG	9 cut(s)	13, 60, 124, 145, 160, 261, 313, 491, 680
Lsp1109I	GCAGC	2 cut(s)	85, 457
MaeIII	GTNAC	1 cut(s)	407
MboII	GAAGA	4 cut(s)	164, 290, 446, 538
MhlI	GDGCHC	2 cut(s)	199, 334
MluCI	AATT	2 cut(s)	61, 464
MlyI	GAGTC	3 cut(s)	332, 546, 680
MmeI	TCCRAC	2 cut(s)	172, 610
MnlI	CCTC	6 cut(s)	73, 239, 254, 306, 313, 430
MseI	TTAA	1 cut(s)	672
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	1 cut(s)	111
Mva1269I	GAATGC	1 cut(s)	702
MwoI	GCNNNNNNNGC	2 cut(s)	98, 593
NlaIII	CATG	4 cut(s)	129, 338, 419, 505
NlaIV	GGNNCC	2 cut(s)	84, 426
NmuCI	GTSAC	1 cut(s)	407
NspI	RCATGY	2 cut(s)	129, 505
PciSI	GCTCTTC	1 cut(s)	521
PctI	GAATGC	1 cut(s)	702
PflMI	CCANNNNNTGG	1 cut(s)	421
PkrI	GCNGC	2 cut(s)	100, 472
PleI	GAGTC	3 cut(s)	332, 546, 680
PpsI	GAGTC	3 cut(s)	332, 546, 680
PspFI	CCCAGC	1 cut(s)	27
PspN4I	GGNNCC	2 cut(s)	84, 426
PspPI	GGNCC	2 cut(s)	352, 425
SapI	GCTCTTC	1 cut(s)	521
SaqAI	TTAA	1 cut(s)	672
SatI	GCNGC	2 cut(s)	99, 471
Sau96I	GGNCC	2 cut(s)	352, 425
SchI	GAGTC	3 cut(s)	332, 546, 680
SduI	GDGCHC	2 cut(s)	199, 334
SfcI	CTRYAG	1 cut(s)	516
SinI	GGWCC	2 cut(s)	352, 425
Sse9I	AATT	2 cut(s)	61, 464
SsiI	CCGC	2 cut(s)	96, 661
TaaI	ACNGT	1 cut(s)	648
TaqI	TCGA	2 cut(s)	498, 543
TaqII	GACCGA	1 cut(s)	369
TasI	AATT	2 cut(s)	61, 464
Tru1I	TTAA	1 cut(s)	672
Tru9I	TTAA	1 cut(s)	672
TscAI	CASTG	2 cut(s)	139, 154
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	2 cut(s)	98, 470
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	2 cut(s)	206, 279
TspRI	CASTG	2 cut(s)	139, 154
Van91I	CCANNNNNTGG	1 cut(s)	421
VpaK11BI	GGWCC	2 cut(s)	352, 425
XapI	RAATTY	2 cut(s)	61, 464
XceI	RCATGY	2 cut(s)	129, 505
XmiI	GTMKAC	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.