Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0015915

Physical Location & Seq

Genomic Coordinates Forward (+)

34982641 .. 34983933

Gene Structure 1293 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0308000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCAACCCAAAACTCAACTCCGCTGCCCCTCAAGGCCATAACATACCTATTCCTTCTAGCTCTTGCAATAACACACACCACCTCAGCCAGAGTCCTTGATGAGGAAACCGATACGCCTCAAACCCAAATACCTGTTTCCACCGTACCTCCTTCTGTGGTCGGTGCCACGTCAGCGGGCCCTCCTCCTGTTGTCAGTGCCACGTCAGCAGGCCCGAGCGCCACAGTGGCCAATGGAGAGTCCTACCATCCGCTTTCATTCTTTCTGCATGATATAATTGGTGGCACCAATCCCTCAGCGAGAGCTGTGACTGGGATTGTGACCAACCCAGCTGTCAATGGCCAAGTCCCCTTTGCCAAACCCAATGGGGCAGTTGTCCAAGGCGGGAATAATGGCATTCCCCAAAACAACAACAACAATGGTATCATCAACAATAACAATGTCCCCTTCTTCACTGGCCTCGGAGGAAACATCAACAACAACCTCAGACAAAACAACAACAACTTTATTGGCGGGAACAATGGGTTCCCCGTTGTGAATGGGGCCCAGCTCCCGCCAGGACAGTCCCTTCAGAAGCTCATGTTCGGCACACTCACGGTCTTTGACGATGAGCTCACTGAAGGGCATGAGCTTGGCTCTGGCTTGTTGGGCAAGGCACAAGGATTTTACGTTGCTAGTTCCGAAGATGGGAGCAGCCAGACCATTGCTTTCACTGCAATGTTTGAGAGTGGTGGGTATGCTGATAGCCTCACATTCTTTGGGGTTCACAGAGTAGCTGCTTCAGAGTCTCACCTTGCAGTTATGGGAGGGACCGGGAAGTACTTGAATGCAAAAGGGTATGCTTTGGTTAAGACCATTAATGGAGTGAATGAGCAAAATACTGATGGAATTGACACTGTTCTTCAGTTTACTGTGTATCTTAGTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

309

Amino Acids

32.03

Weight (kDa)

5.08

Isoelectric Point (pI)

27.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dirigent	PF03018	170 - 307	9.2e-29	Dirigent-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80870
fragaria_vesca	FvH4_6g28550
malus_domestica	MD17G1223700.v1.1
prunus_persica	Prupe.3G099300_v2.0.a1
pyrus_communis	pycom17g22750
rosa_chinensis	RchiOBHm_Chr2g0132871
rosa_laevigata	RLG00000019287
rosa_multiflora	Rmu_co8480901.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111650
rosa_rugosa	Rorug02G0308000
rosa_samantha	Rh2AG360600 Rh2BG366500 Rh2CG343800 Rh2DG383500
rosa_wichuraiana	Rw2G029320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	164, 284
AciI	CCGC	6 cut(s)	23, 176, 251, 384, 513, 554
AcoI	YGGCCR	2 cut(s)	228, 340
AcuI	CTGAAG	4 cut(s)	554, 639, 765, 887
AfaI	GTAC	2 cut(s)	147, 821
AfiI	CCNNNNNNNGG	2 cut(s)	103, 687
AgsI	TTSAA	1 cut(s)	826
AjiI	CACGTC	2 cut(s)	171, 204
AjnI	CCWGG	1 cut(s)	556
AluBI	AGCT	8 cut(s)	62, 305, 332, 550, 577, 613, 631, 776
AluI	AGCT	8 cut(s)	62, 305, 332, 550, 577, 613, 631, 776
Alw21I	GWGCWC	1 cut(s)	615
Alw26I	GTCTC	1 cut(s)	792
Ama87I	CYCGRG	1 cut(s)	214
AoxI	GGCC	7 cut(s)	36, 178, 211, 228, 340, 457, 543
ApaI	GGGCCC	2 cut(s)	182, 547
ApeKI	GCWGC	3 cut(s)	25, 693, 776
AseI	ATTAAT	1 cut(s)	858
AspLEI	GCGC	1 cut(s)	221
AspS9I	GGNCC	6 cut(s)	178, 179, 212, 543, 544, 810
AsuC2I	CCSGG	1 cut(s)	814
AsuHPI	GGTGA	1 cut(s)	782
AvaI	CYCGRG	1 cut(s)	214
AvaII	GGWCC	1 cut(s)	810
BaeGI	GKGCMC	2 cut(s)	182, 547
BaeI	ACNNNNGTAYC	2 cut(s)	406, 439
BalI	TGGCCA	2 cut(s)	230, 342
BanI	GGYRCC	2 cut(s)	164, 284
BanII	GRGCYC	3 cut(s)	182, 547, 615
Bbv12I	GWGCWC	1 cut(s)	615
BbvCI	CCTCAGC	2 cut(s)	85, 295
BbvI	GCAGC	3 cut(s)	12, 705, 763
BccI	CCATC	3 cut(s)	255, 680, 878
BciT130I	CCWGG	1 cut(s)	558
BcnI	CCSGG	1 cut(s)	814
BcoDI	GTCTC	1 cut(s)	792
BfaI	CTAG	3 cut(s)	59, 675, 928
BfoI	RGCGCY	1 cut(s)	222
BglI	GCCNNNNNGGC	1 cut(s)	227
BisI	GCNGC	3 cut(s)	26, 694, 777
BlsI	GCNGC	3 cut(s)	27, 695, 778
BmcAI	AGTACT	1 cut(s)	821
Bme1390I	CCNGG	2 cut(s)	558, 814
Bme18I	GGWCC	1 cut(s)	810
BmeT110I	CYCGRG	1 cut(s)	214
BmgBI	CACGTC	2 cut(s)	171, 204
BmgT120I	GGNCC	6 cut(s)	178, 179, 212, 543, 544, 810
BmiI	GGNNCC	7 cut(s)	166, 180, 286, 527, 544, 545, 811
BmrFI	CCNGG	2 cut(s)	558, 814
BmrI	ACTGGG	1 cut(s)	321
BmuI	ACTGGG	1 cut(s)	321
BplI	GAGNNNNNCTC	2 cut(s)	620, 652
Bpu10I	CCTNAGC	2 cut(s)	85, 295
BpuEI	CTTGAG	1 cut(s)	17
BpuMI	CCSGG	1 cut(s)	814
BsaJI	CCNNGG	2 cut(s)	379, 460
BsaXI	ACNNNNNCTCC	2 cut(s)	133, 163
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 687
Bse1I	ACTGG	2 cut(s)	316, 460
Bse3DI	GCAATG	2 cut(s)	702, 723
BseBI	CCWGG	1 cut(s)	558
BseDI	CCNNGG	2 cut(s)	379, 460
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	2 cut(s)	103, 687
BseMI	GCAATG	2 cut(s)	702, 723
BseMII	CTCAG	3 cut(s)	99, 309, 499
BseNI	ACTGG	2 cut(s)	316, 460
BseRI	GAGGAG	1 cut(s)	174
BseSI	GKGCMC	2 cut(s)	182, 547
BseXI	GCAGC	3 cut(s)	12, 705, 763
BseYI	CCCAGC	2 cut(s)	328, 546
BshFI	GGCC	7 cut(s)	38, 180, 213, 230, 342, 459, 545
BshNI	GGYRCC	2 cut(s)	164, 284
BsiHKAI	GWGCWC	1 cut(s)	615
BsiHKCI	CYCGRG	1 cut(s)	214
BsiSI	CCGG	1 cut(s)	813
BslFI	GGGAC	4 cut(s)	332, 428, 550, 823
BslI	CCNNNNNNNGG	2 cut(s)	103, 687
BsmAI	GTCTC	1 cut(s)	792
BsmFI	GGGAC	4 cut(s)	332, 428, 550, 823
BsmI	GAATGC	2 cut(s)	396, 832
BsnI	GGCC	7 cut(s)	38, 180, 213, 230, 342, 459, 545
BsoBI	CYCGRG	1 cut(s)	214
Bsp120I	GGGCCC	2 cut(s)	178, 543
Bsp1286I	GDGCHC	3 cut(s)	182, 547, 615
BspACI	CCGC	6 cut(s)	23, 176, 251, 384, 513, 554
BspANI	GGCC	7 cut(s)	38, 180, 213, 230, 342, 459, 545
BspCNI	CTCAG	3 cut(s)	98, 308, 498
BspLI	GGNNCC	7 cut(s)	166, 180, 286, 527, 544, 545, 811
BspT107I	GGYRCC	2 cut(s)	164, 284
BsrDI	GCAATG	2 cut(s)	702, 723
BsrI	ACTGG	2 cut(s)	316, 460
BssECI	CCNNGG	2 cut(s)	379, 460
BssT1I	CCWWGG	1 cut(s)	379
Bst2UI	CCWGG	1 cut(s)	558
Bst4CI	ACNGT	6 cut(s)	145, 226, 564, 598, 898, 913
BstC8I	GCNNGC	2 cut(s)	178, 211
BstDEI	CTNAG	4 cut(s)	85, 295, 485, 920
BstENI	CCTNNNNNAGG	1 cut(s)	101
BstF5I	GGATG	1 cut(s)	247
BstH2I	RGCGCY	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	221
BstMAI	GTCTC	1 cut(s)	792
BstMWI	GCNNNNNNNGC	5 cut(s)	173, 206, 227, 648, 713
BstNI	CCWGG	1 cut(s)	558
BstSCI	CCNGG	2 cut(s)	556, 812
BstSLI	GKGCMC	2 cut(s)	182, 547
BstV1I	GCAGC	3 cut(s)	12, 705, 763
BsuRI	GGCC	7 cut(s)	38, 180, 213, 230, 342, 459, 545
BtrI	CACGTC	2 cut(s)	171, 204
BtsCI	GGATG	1 cut(s)	247
BtsI	GCAGTG	1 cut(s)	711
BtsIMutI	CAGTG	6 cut(s)	202, 231, 453, 615, 711, 894
Cac8I	GCNNGC	2 cut(s)	178, 211
CfoI	GCGC	1 cut(s)	221
Cfr13I	GGNCC	6 cut(s)	178, 179, 212, 543, 544, 810
Csp6I	GTAC	2 cut(s)	146, 820
CviAII	CATG	3 cut(s)	269, 580, 626
CviQI	GTAC	2 cut(s)	146, 820
DdeI	CTNAG	4 cut(s)	85, 295, 485, 920
EaeI	YGGCCR	2 cut(s)	228, 340
Ecl136II	GAGCTC	1 cut(s)	613
Eco130I	CCWWGG	1 cut(s)	379
Eco24I	GRGCYC	3 cut(s)	182, 547, 615
Eco47I	GGWCC	1 cut(s)	810
Eco53kI	GAGCTC	1 cut(s)	613
Eco57I	CTGAAG	4 cut(s)	554, 639, 765, 887
Eco88I	CYCGRG	1 cut(s)	214
EcoICRI	GAGCTC	1 cut(s)	613
EcoNI	CCTNNNNNAGG	1 cut(s)	101
EcoO109I	RGGNCCY	2 cut(s)	179, 543
EcoRII	CCWGG	1 cut(s)	556
EcoT14I	CCWWGG	1 cut(s)	379
EcoT38I	GRGCYC	3 cut(s)	182, 547, 615
ErhI	CCWWGG	1 cut(s)	379
FaeI	CATG	3 cut(s)	272, 583, 629
FaiI	YATR	9 cut(s)	41, 46, 270, 275, 581, 627, 738, 803, 840
FaqI	GGGAC	4 cut(s)	332, 428, 550, 823
FatI	CATG	3 cut(s)	268, 579, 625
FauI	CCCGC	4 cut(s)	169, 377, 506, 561
Fnu4HI	GCNGC	3 cut(s)	26, 694, 777
FokI	GGATG	1 cut(s)	234
FriOI	GRGCYC	3 cut(s)	182, 547, 615
Fsp4HI	GCNGC	3 cut(s)	26, 694, 777
FspBI	CTAG	3 cut(s)	59, 675, 928
GlaI	GCGC	1 cut(s)	220
GluI	GCNGC	3 cut(s)	26, 694, 777
GsaI	CCCAGC	2 cut(s)	332, 550
HaeII	RGCGCY	1 cut(s)	222
HaeIII	GGCC	7 cut(s)	38, 180, 213, 230, 342, 459, 545
HapII	CCGG	1 cut(s)	813
HhaI	GCGC	1 cut(s)	221
Hin1II	CATG	3 cut(s)	272, 583, 629
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HinfI	GANTC	3 cut(s)	93, 239, 785
HpaII	CCGG	1 cut(s)	813
HphI	GGTGA	1 cut(s)	782
Hpy166II	GTNNAC	2 cut(s)	766, 909
Hpy188I	TCNGA	5 cut(s)	464, 488, 573, 682, 784
Hpy8I	GTNNAC	2 cut(s)	766, 909
HpyAV	CCTTC	5 cut(s)	65, 162, 457, 578, 614
HpyCH4III	ACNGT	6 cut(s)	145, 226, 564, 598, 898, 913
HpyCH4IV	ACGT	3 cut(s)	170, 203, 669
HpyCH4V	TGCA	5 cut(s)	68, 268, 716, 797, 830
HpyF10VI	GCNNNNNNNGC	5 cut(s)	173, 206, 227, 648, 713
HpyF3I	CTNAG	4 cut(s)	85, 295, 485, 920
HpySE526I	ACGT	3 cut(s)	170, 203, 669
Hsp92II	CATG	3 cut(s)	272, 583, 629
HspAI	GCGC	1 cut(s)	219
LmnI	GCTCC	2 cut(s)	555, 690
Lsp1109I	GCAGC	3 cut(s)	12, 705, 763
MaeI	CTAG	3 cut(s)	59, 675, 928
MaeII	ACGT	3 cut(s)	170, 203, 669
MaeIII	GTNAC	3 cut(s)	307, 319, 923
MboII	GAAGA	3 cut(s)	442, 695, 893
MhlI	GDGCHC	3 cut(s)	182, 547, 615
MlsI	TGGCCA	2 cut(s)	230, 342
MluCI	AATT	2 cut(s)	276, 888
MluNI	TGGCCA	2 cut(s)	230, 342
MlyI	GAGTC	3 cut(s)	102, 248, 794
Mox20I	TGGCCA	2 cut(s)	230, 342
MscI	TGGCCA	2 cut(s)	230, 342
MseI	TTAA	2 cut(s)	849, 858
MslI	CAYNNNNRTG	1 cut(s)	716
Msp20I	TGGCCA	2 cut(s)	230, 342
MspA1I	CMGCKG	3 cut(s)	25, 176, 332
MspI	CCGG	1 cut(s)	813
MspR9I	CCNGG	2 cut(s)	558, 814
Mva1269I	GAATGC	2 cut(s)	396, 832
MvaI	CCWGG	1 cut(s)	558
MwoI	GCNNNNNNNGC	5 cut(s)	173, 206, 227, 648, 713
NciI	CCSGG	1 cut(s)	814
NlaIII	CATG	3 cut(s)	272, 583, 629
NlaIV	GGNNCC	7 cut(s)	166, 180, 286, 527, 544, 545, 811
NmuCI	GTSAC	2 cut(s)	307, 319
PctI	GAATGC	2 cut(s)	396, 832
PkrI	GCNGC	3 cut(s)	27, 695, 778
PleI	GAGTC	3 cut(s)	101, 247, 793
PpsI	GAGTC	3 cut(s)	101, 247, 793
PshBI	ATTAAT	1 cut(s)	858
Psp124BI	GAGCTC	1 cut(s)	615
Psp6I	CCWGG	1 cut(s)	556
PspFI	CCCAGC	2 cut(s)	328, 546
PspGI	CCWGG	1 cut(s)	556
PspN4I	GGNNCC	7 cut(s)	166, 180, 286, 527, 544, 545, 811
PspOMI	GGGCCC	2 cut(s)	178, 543
PspPI	GGNCC	6 cut(s)	178, 179, 212, 543, 544, 810
PvuII	CAGCTG	1 cut(s)	332
RsaI	GTAC	2 cut(s)	147, 821
RsaNI	GTAC	2 cut(s)	146, 820
RseI	CAYNNNNRTG	1 cut(s)	716
SacI	GAGCTC	1 cut(s)	615
SaqAI	TTAA	2 cut(s)	849, 858
SatI	GCNGC	3 cut(s)	26, 694, 777
Sau96I	GGNCC	6 cut(s)	178, 179, 212, 543, 544, 810
ScaI	AGTACT	1 cut(s)	821
SchI	GAGTC	3 cut(s)	102, 248, 794
ScrFI	CCNGG	2 cut(s)	558, 814
SduI	GDGCHC	3 cut(s)	182, 547, 615
SinI	GGWCC	1 cut(s)	810
SmiMI	CAYNNNNRTG	1 cut(s)	716
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	2 cut(s)	276, 888
SsiI	CCGC	6 cut(s)	23, 176, 251, 384, 513, 554
SspMI	CTAG	3 cut(s)	59, 675, 928
SstI	GAGCTC	1 cut(s)	615
StyD4I	CCNGG	2 cut(s)	556, 812
StyI	CCWWGG	1 cut(s)	379
TaaI	ACNGT	6 cut(s)	145, 226, 564, 598, 898, 913
TaiI	ACGT	3 cut(s)	173, 206, 672
TasI	AATT	2 cut(s)	276, 888
TatI	WGTACW	1 cut(s)	819
Tru1I	TTAA	2 cut(s)	849, 858
Tru9I	TTAA	2 cut(s)	849, 858
TscAI	CASTG	6 cut(s)	202, 231, 460, 622, 718, 901
TseFI	GTSAC	2 cut(s)	307, 319
TseI	GCWGC	3 cut(s)	25, 693, 776
Tsp45I	GTSAC	2 cut(s)	307, 319
TspDTI	ATGAA	1 cut(s)	246
TspRI	CASTG	6 cut(s)	202, 231, 460, 622, 718, 901
VpaK11BI	GGWCC	1 cut(s)	810
VspI	ATTAAT	1 cut(s)	858
XagI	CCTNNNNNAGG	1 cut(s)	101
XspI	CTAG	3 cut(s)	59, 675, 928
ZrmI	AGTACT	1 cut(s)	821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.