Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0029845

Physical Location & Seq

Genomic Coordinates Reverse (-)

33117403 .. 33118086

Gene Structure 684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0310400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGAGAGGAGCGTTTGGCTACGCTCGCCCTTGAAGCTGGTGAGAGGGGTTAAGCAAGAAATCAAAAATCTCACCAAGAAACTCAAAGCTATTCGAGCTGTACTGGAGGACGCAGAGCAGAGGCAAGTGATGGAAGCCAGCGTGAAAGATTGGCTGAATGAGCTAAATGATGTTTCCGACGACATGGATGACGTGCTGGATGAGTGGATCACTAGAGTTCTCATGCATCAATTGGAGAAACAAGAAAAACAAGGTGCAAATGCTCTTGCTACTACTAAGAAGATGGTATGCTTTCCCTTTCCTTCCTCTTGCTTTCGCTTCGGCCAAGTCAATCAGCTATTTCGTCATCACGAAATTGCTGCGAAGATAAAAGAGCTAAATGAAAGTTTAGATTTGATTGATCAAAACAAACAAGTTTTGGCTTTCATCAAAACACCACTAGGGTCCCCGAACTACCTCAACGACAAAAAACTACTTCTCTTCCCAATATTAAAACATTTGGTCGAGATAAGGAGAAAAACCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000228 GO:0000280 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0000793 GO:0000794 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0070013 GO:0070192 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

Rad51

Protein Analysis

175

Amino Acids

20.37

Weight (kDa)

9.2

Isoelectric Point (pI)

49.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	7 - 82	1.2e-22	Rx N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0029845)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0147961
rosa_rugosa	Rorug03G0310400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	215
AcoI	YGGCCR	1 cut(s)	322
AfaI	GTAC	1 cut(s)	102
AgsI	TTSAA	1 cut(s)	34
AjiI	CACGTC	1 cut(s)	193
AluBI	AGCT	6 cut(s)	37, 89, 98, 163, 337, 376
AluI	AGCT	6 cut(s)	37, 89, 98, 163, 337, 376
AlwI	GGATC	1 cut(s)	215
AoxI	GGCC	1 cut(s)	322
ApeKI	GCWGC	1 cut(s)	359
AspS9I	GGNCC	1 cut(s)	444
AsuHPI	GGTGA	2 cut(s)	52, 64
AvaII	GGWCC	1 cut(s)	444
BbvI	GCAGC	1 cut(s)	346
BccI	CCATC	2 cut(s)	124, 277
BcgI	CGANNNNNNTGC	2 cut(s)	341, 375
BclI	TGATCA	1 cut(s)	400
BfaI	CTAG	2 cut(s)	213, 440
BisI	GCNGC	1 cut(s)	360
BlsI	GCNGC	1 cut(s)	361
Bme18I	GGWCC	1 cut(s)	444
BmgBI	CACGTC	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	444
BmiI	GGNNCC	2 cut(s)	445, 446
BmsI	GCATC	1 cut(s)	235
BpmI	CTGGAG	1 cut(s)	125
Bse1I	ACTGG	1 cut(s)	108
BseGI	GGATG	2 cut(s)	193, 205
BseNI	ACTGG	1 cut(s)	108
BseRI	GAGGAG	1 cut(s)	22
BseXI	GCAGC	1 cut(s)	346
BshFI	GGCC	1 cut(s)	324
BslFI	GGGAC	1 cut(s)	430
BsmFI	GGGAC	1 cut(s)	430
BsnI	GGCC	1 cut(s)	324
Bsp143I	GATC	2 cut(s)	207, 400
BspANI	GGCC	1 cut(s)	324
BspLI	GGNNCC	2 cut(s)	445, 446
BspPI	GGATC	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	108
BssMI	GATC	2 cut(s)	207, 400
Bst6I	CTCTTC	1 cut(s)	485
BstC8I	GCNNGC	2 cut(s)	26, 139
BstDEI	CTNAG	1 cut(s)	276
BstF5I	GGATG	2 cut(s)	193, 205
BstKTI	GATC	2 cut(s)	210, 403
BstMBI	GATC	2 cut(s)	207, 400
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 34, 95, 160
BstV1I	GCAGC	1 cut(s)	346
BsuRI	GGCC	1 cut(s)	324
BtrI	CACGTC	1 cut(s)	193
BtsCI	GGATG	2 cut(s)	193, 205
Cac8I	GCNNGC	2 cut(s)	26, 139
Cfr13I	GGNCC	1 cut(s)	444
CseI	GACGC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	101
CviAII	CATG	2 cut(s)	184, 223
CviQI	GTAC	1 cut(s)	101
DdeI	CTNAG	1 cut(s)	276
DpnI	GATC	2 cut(s)	209, 402
DpnII	GATC	2 cut(s)	207, 400
EaeI	YGGCCR	1 cut(s)	322
Eam1104I	CTCTTC	1 cut(s)	485
EarI	CTCTTC	1 cut(s)	485
Eco47I	GGWCC	1 cut(s)	444
EcoO109I	RGGNCCY	1 cut(s)	444
EcoT22I	ATGCAT	1 cut(s)	228
FaeI	CATG	2 cut(s)	187, 226
FaiI	YATR	4 cut(s)	185, 224, 289, 526
FaqI	GGGAC	1 cut(s)	430
FatI	CATG	2 cut(s)	183, 222
FbaI	TGATCA	1 cut(s)	400
Fnu4HI	GCNGC	1 cut(s)	360
FokI	GGATG	2 cut(s)	200, 212
Fsp4HI	GCNGC	1 cut(s)	360
FspBI	CTAG	2 cut(s)	213, 440
GluI	GCNGC	1 cut(s)	360
GsuI	CTGGAG	1 cut(s)	125
HaeIII	GGCC	1 cut(s)	324
HgaI	GACGC	1 cut(s)	119
Hin1II	CATG	2 cut(s)	187, 226
HphI	GGTGA	2 cut(s)	52, 64
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	2 cut(s)	350, 505
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	1 cut(s)	312
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	2 cut(s)	226, 257
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 34, 95, 160
HpyF3I	CTNAG	1 cut(s)	276
HpySE526I	ACGT	1 cut(s)	192
Hsp92II	CATG	2 cut(s)	187, 226
KflI	GGGWCCC	1 cut(s)	444
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	2 cut(s)	207, 400
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	4 cut(s)	23, 89, 151, 182
Lsp1109I	GCAGC	1 cut(s)	346
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	2 cut(s)	213, 440
MaeII	ACGT	1 cut(s)	192
MalI	GATC	2 cut(s)	209, 402
MboI	GATC	2 cut(s)	207, 400
MboII	GAAGA	3 cut(s)	292, 376, 472
MfeI	CAATTG	1 cut(s)	230
MluCI	AATT	2 cut(s)	230, 354
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	5 cut(s)	38, 100, 114, 316, 467
Mph1103I	ATGCAT	1 cut(s)	228
MseI	TTAA	2 cut(s)	51, 491
MunI	CAATTG	1 cut(s)	230
MwoI	GCNNNNNNNGC	4 cut(s)	25, 34, 95, 160
NdeII	GATC	2 cut(s)	207, 400
NlaIII	CATG	2 cut(s)	187, 226
NlaIV	GGNNCC	2 cut(s)	445, 446
NsiI	ATGCAT	1 cut(s)	228
PkrI	GCNGC	1 cut(s)	361
PpuMI	RGGWCCY	1 cut(s)	444
Psp5II	RGGWCCY	1 cut(s)	444
PspN4I	GGNNCC	2 cut(s)	445, 446
PspPI	GGNCC	1 cut(s)	444
PspPPI	RGGWCCY	1 cut(s)	444
RsaI	GTAC	1 cut(s)	102
RsaNI	GTAC	1 cut(s)	101
SaqAI	TTAA	2 cut(s)	51, 491
SatI	GCNGC	1 cut(s)	360
Sau3AI	GATC	2 cut(s)	207, 400
Sau96I	GGNCC	1 cut(s)	444
SfaNI	GCATC	1 cut(s)	235
SinI	GGWCC	1 cut(s)	444
Sse9I	AATT	2 cut(s)	230, 354
SspI	AATATT	1 cut(s)	489
SspMI	CTAG	2 cut(s)	213, 440
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	2 cut(s)	94, 504
TasI	AATT	2 cut(s)	230, 354
TatI	WGTACW	1 cut(s)	100
Tru1I	TTAA	2 cut(s)	51, 491
Tru9I	TTAA	2 cut(s)	51, 491
TseI	GCWGC	1 cut(s)	359
TspDTI	ATGAA	2 cut(s)	396, 415
VpaK11BI	GGWCC	1 cut(s)	444
XspI	CTAG	2 cut(s)	213, 440
Zsp2I	ATGCAT	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.