Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0018418

Physical Location & Seq

Genomic Coordinates Forward (+)

23746420 .. 23750184

Gene Structure 3765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0142600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGAGTTTTGTCGACTTGGTTTCTCGGTTAGCTCGGGTTCGACGCAGTTGCTACGCCGGCGACTTCTCCGACGCGTCTGGGCTTGGTTTCTGGTTCGACTGCTTCCCTGGATGAGGCCTGACCTTGAGTGGGAGTTAAACTTCGAAGATTTCTGGGTTGTAGCACGAGGCATCATCAACTCATCACCAACCCAGTCTCGGCAGCAAGCTTTGGAAAACGAAGTTTCTGTTACAATACCAGAAACTAGCAAAGTTATGGCTGTTGGTTGTTCGGTGTTTTTGATGACTTTGGTTCAAGACCGTCCTACCATGGAATATGCTAAGAAGGATTTGCATACATATGCACTTTCAGTTGCATTACCATTGGATGGTGCACTTCAGCAACTCAGTGAGGTTTTTGCGAATTCGCCCTTCTTAATTTCAGCAGAGGTTGCCGGTGCATTAGATGGAGGGAATAATGATGATTACAAAGAGACAACTGTTCCTGCCGGTAAAACACATGAGGTTTCTCTGTCTGTGGACTCGATAAATTCGTATATTGCTTGGGATTTTTCGCTTGTGCAAGGGAAGATAAACTTGGTATCGTTCCTAAATTTCATTTCATTACTCGGTGAATGTGTCTTCTTCTTTCATAGCCTGACGAAGTATTCTTTCATCTGTGATGTGAATGCTCTGGCCTTCTTCGTTTCCTGTAGTTCTCCGTTGTGTAACTCGTGCTATTTTCTTGTATGCCTGTTTGGTTGGAATGAGATTGGTAATGAGTCCAATAAAAGTTCTAGACTGGCTTTTTTGGCTGAGGTGTCTTTGGTTGGACATTTGGACAGAAATTGCAAACCACTCGCTTCAACTTTAAAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0008150 GO:0010336 GO:0016020 GO:0031982 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044464 GO:0048878 GO:0050801 GO:0055081 GO:0055088 GO:0065007 GO:0065008 GO:0071944 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

286

Amino Acids

31.97

Weight (kDa)

5.45

Isoelectric Point (pI)

40.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018418)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15300
rosa_chinensis	RchiOBHm_Chr4g0416541
rosa_laevigata	RLG00000007975
rosa_multiflora	Rmu_sc0003722.1_g000036
rosa_roxburghii	Rroxscaffold_5G00360430
rosa_rugosa	Rorug04G0142600
rosa_samantha	Rh4BG202800 Rh4CG216100 Rh4DG202300
rosa_wichuraiana	Rw4G017370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	368
AccI	GTMKAC	1 cut(s)	13
AccII	CGCG	1 cut(s)	75
AcsI	RAATTY	3 cut(s)	403, 529, 592
AcuI	CTGAAG	1 cut(s)	362
AfiI	CCNNNNNNNGG	4 cut(s)	114, 130, 198, 368
AflIII	ACRYGT	1 cut(s)	73
AgsI	TTSAA	2 cut(s)	296, 846
AjnI	CCWGG	1 cut(s)	107
AjuI	GAANNNNNNNTTGG	2 cut(s)	560, 592
AluBI	AGCT	2 cut(s)	33, 209
AluI	AGCT	2 cut(s)	33, 209
Alw21I	GWGCWC	1 cut(s)	376
Alw26I	GTCTC	2 cut(s)	201, 467
Alw44I	GTGCAC	1 cut(s)	372
Ama87I	CYCGRG	1 cut(s)	34
AoxI	GGCC	2 cut(s)	116, 675
ApaLI	GTGCAC	1 cut(s)	372
ApeKI	GCWGC	1 cut(s)	202
ApoI	RAATTY	3 cut(s)	403, 529, 592
AsuHPI	GGTGA	2 cut(s)	177, 623
AsuII	TTCGAA	1 cut(s)	144
AvaI	CYCGRG	1 cut(s)	34
BaeGI	GKGCMC	1 cut(s)	376
BauI	CACGAG	2 cut(s)	165, 712
BbsI	GAAGAC	1 cut(s)	613
Bbv12I	GWGCWC	1 cut(s)	376
BbvCI	CCTCAGC	1 cut(s)	795
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	2 cut(s)	362, 440
BcgI	CGANNNNNNTGC	4 cut(s)	31, 65, 820, 854
BciT130I	CCWGG	1 cut(s)	109
BcoDI	GTCTC	2 cut(s)	201, 467
BfaI	CTAG	2 cut(s)	246, 777
BfmI	CTRYAG	1 cut(s)	691
BisI	GCNGC	1 cut(s)	203
BlsI	GCNGC	1 cut(s)	204
Bme1390I	CCNGG	1 cut(s)	109
BmeT110I	CYCGRG	1 cut(s)	34
BmrFI	CCNGG	1 cut(s)	109
BmrI	ACTGGG	1 cut(s)	187
BmsI	GCATC	1 cut(s)	180
BmuI	ACTGGG	1 cut(s)	187
BpiI	GAAGAC	1 cut(s)	613
Bpu10I	CCTNAGC	1 cut(s)	795
Bpu14I	TTCGAA	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	146
BsaJI	CCNNGG	2 cut(s)	107, 309
Bsc4I	CCNNNNNNNGG	4 cut(s)	114, 130, 198, 368
Bse118I	RCCGGY	3 cut(s)	57, 434, 488
Bse1I	ACTGG	2 cut(s)	193, 786
BseBI	CCWGG	1 cut(s)	109
BseDI	CCNNGG	2 cut(s)	107, 309
BseGI	GGATG	2 cut(s)	117, 373
BseLI	CCNNNNNNNGG	4 cut(s)	114, 130, 198, 368
BseMII	CTCAG	2 cut(s)	400, 786
BseNI	ACTGG	2 cut(s)	193, 786
BseSI	GKGCMC	1 cut(s)	376
BseXI	GCAGC	1 cut(s)	214
Bsh1236I	CGCG	1 cut(s)	75
BshFI	GGCC	2 cut(s)	118, 677
BsiHKAI	GWGCWC	1 cut(s)	376
BsiHKCI	CYCGRG	1 cut(s)	34
BsiSI	CCGG	3 cut(s)	58, 435, 489
BslI	CCNNNNNNNGG	4 cut(s)	114, 130, 198, 368
BsmAI	GTCTC	2 cut(s)	201, 467
BsmI	GAATGC	1 cut(s)	673
BsnI	GGCC	2 cut(s)	118, 677
BsoBI	CYCGRG	1 cut(s)	34
Bsp119I	TTCGAA	1 cut(s)	144
Bsp1286I	GDGCHC	1 cut(s)	376
Bsp19I	CCATGG	1 cut(s)	309
BspANI	GGCC	2 cut(s)	118, 677
BspCNI	CTCAG	2 cut(s)	399, 787
BspFNI	CGCG	1 cut(s)	75
BspT104I	TTCGAA	1 cut(s)	144
BsrFI	RCCGGY	3 cut(s)	57, 434, 488
BsrI	ACTGG	2 cut(s)	193, 786
BssAI	RCCGGY	3 cut(s)	57, 434, 488
BssECI	CCNNGG	2 cut(s)	107, 309
BssSI	CACGAG	2 cut(s)	165, 712
BssT1I	CCWWGG	1 cut(s)	309
Bst2BI	CACGAG	2 cut(s)	165, 712
Bst2UI	CCWGG	1 cut(s)	109
Bst4CI	ACNGT	2 cut(s)	302, 481
BstAPI	GCANNNNNTGC	1 cut(s)	431
BstBI	TTCGAA	1 cut(s)	144
BstC8I	GCNNGC	2 cut(s)	59, 207
BstDEI	CTNAG	3 cut(s)	321, 386, 795
BstDSI	CCRYGG	1 cut(s)	309
BstENI	CCTNNNNNAGG	1 cut(s)	112
BstF5I	GGATG	2 cut(s)	117, 373
BstFNI	CGCG	1 cut(s)	75
BstMAI	GTCTC	2 cut(s)	201, 467
BstMWI	GCNNNNNNNGC	3 cut(s)	58, 431, 791
BstNI	CCWGG	1 cut(s)	109
BstSCI	CCNGG	1 cut(s)	107
BstSFI	CTRYAG	1 cut(s)	691
BstSLI	GKGCMC	1 cut(s)	376
BstUI	CGCG	1 cut(s)	75
BstV1I	GCAGC	1 cut(s)	214
BstV2I	GAAGAC	1 cut(s)	613
BsuRI	GGCC	2 cut(s)	118, 677
BtgI	CCRYGG	1 cut(s)	309
BtsCI	GGATG	2 cut(s)	117, 373
BtsIMutI	CAGTG	1 cut(s)	394
Cac8I	GCNNGC	2 cut(s)	59, 207
Cfr10I	RCCGGY	3 cut(s)	57, 434, 488
CseI	GACGC	3 cut(s)	52, 64, 81
CviAII	CATG	2 cut(s)	310, 500
DdeI	CTNAG	3 cut(s)	321, 386, 795
DraI	TTTAAA	1 cut(s)	852
Eco130I	CCWWGG	1 cut(s)	309
Eco147I	AGGCCT	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	362
Eco88I	CYCGRG	1 cut(s)	34
EcoNI	CCTNNNNNAGG	1 cut(s)	112
EcoRI	GAATTC	1 cut(s)	403
EcoRII	CCWGG	1 cut(s)	107
EcoT14I	CCWWGG	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	2 cut(s)	313, 503
FalI	AAGNNNNNCTT	2 cut(s)	560, 592
FatI	CATG	2 cut(s)	309, 499
FauNDI	CATATG	1 cut(s)	340
FblI	GTMKAC	1 cut(s)	13
Fnu4HI	GCNGC	1 cut(s)	203
FokI	GGATG	2 cut(s)	124, 380
Fsp4HI	GCNGC	1 cut(s)	203
FspBI	CTAG	2 cut(s)	246, 777
GluI	GCNGC	1 cut(s)	203
HaeIII	GGCC	2 cut(s)	118, 677
HapII	CCGG	3 cut(s)	58, 435, 489
HgaI	GACGC	3 cut(s)	52, 64, 81
Hin1II	CATG	2 cut(s)	313, 503
HincII	GTYRAC	1 cut(s)	14
HindII	GTYRAC	1 cut(s)	14
HindIII	AAGCTT	1 cut(s)	207
HinfI	GANTC	2 cut(s)	521, 761
HpaII	CCGG	3 cut(s)	58, 435, 489
HphI	GGTGA	2 cut(s)	177, 623
Hpy166II	GTNNAC	3 cut(s)	14, 374, 520
Hpy188I	TCNGA	1 cut(s)	71
Hpy188III	TCNNGA	2 cut(s)	296, 777
Hpy8I	GTNNAC	3 cut(s)	14, 374, 520
Hpy99I	CGWCG	2 cut(s)	46, 75
HpyAV	CCTTC	3 cut(s)	319, 421, 688
HpyCH4III	ACNGT	2 cut(s)	302, 481
HpyCH4V	TGCA	7 cut(s)	334, 344, 356, 374, 440, 562, 831
HpyF10VI	GCNNNNNNNGC	3 cut(s)	58, 431, 791
HpyF3I	CTNAG	3 cut(s)	321, 386, 795
Hsp92II	CATG	2 cut(s)	313, 503
KroI	GCCGGC	1 cut(s)	57
KroNI	GCCGGC	1 cut(s)	59
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	1 cut(s)	180
MaeI	CTAG	2 cut(s)	246, 777
MaeIII	GTNAC	2 cut(s)	229, 707
MboII	GAAGA	5 cut(s)	158, 580, 613, 616, 673
MhlI	GDGCHC	1 cut(s)	376
MluCI	AATT	5 cut(s)	403, 417, 529, 592, 826
MluI	ACGCGT	1 cut(s)	73
MlyI	GAGTC	2 cut(s)	515, 770
MmeI	TCCRAC	3 cut(s)	94, 722, 790
MnlI	CCTC	7 cut(s)	108, 161, 385, 421, 443, 496, 790
MreI	CGCCGGCG	1 cut(s)	57
MroNI	GCCGGC	1 cut(s)	57
MseI	TTAA	3 cut(s)	137, 416, 851
MslI	CAYNNNNRTG	1 cut(s)	339
MspI	CCGG	3 cut(s)	58, 435, 489
MspR9I	CCNGG	1 cut(s)	109
Mva1269I	GAATGC	1 cut(s)	673
MvaI	CCWGG	1 cut(s)	109
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	3 cut(s)	58, 431, 791
NaeI	GCCGGC	1 cut(s)	59
NcoI	CCATGG	1 cut(s)	309
NdeI	CATATG	1 cut(s)	340
NgoMIV	GCCGGC	1 cut(s)	57
NlaIII	CATG	2 cut(s)	313, 503
NmeAIII	GCCGAG	1 cut(s)	178
NspV	TTCGAA	1 cut(s)	144
PceI	AGGCCT	1 cut(s)	118
PcsI	WCGNNNNNNNCGW	1 cut(s)	530
PctI	GAATGC	1 cut(s)	673
PdiI	GCCGGC	1 cut(s)	59
PflMI	CCANNNNNTGG	1 cut(s)	368
PkrI	GCNGC	1 cut(s)	204
PleI	GAGTC	2 cut(s)	515, 769
PpsI	GAGTC	2 cut(s)	515, 769
Psp6I	CCWGG	1 cut(s)	107
PspGI	CCWGG	1 cut(s)	107
RseI	CAYNNNNRTG	1 cut(s)	339
SalI	GTCGAC	1 cut(s)	12
SaqAI	TTAA	3 cut(s)	137, 416, 851
SatI	GCNGC	1 cut(s)	203
SchI	GAGTC	2 cut(s)	515, 770
ScrFI	CCNGG	1 cut(s)	109
SduI	GDGCHC	1 cut(s)	376
SetI	ASST	7 cut(s)	35, 126, 211, 396, 432, 507, 801
SfaNI	GCATC	1 cut(s)	180
SfcI	CTRYAG	1 cut(s)	691
SfuI	TTCGAA	1 cut(s)	144
SgrAI	CRCCGGYG	1 cut(s)	57
SmiMI	CAYNNNNRTG	1 cut(s)	339
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	5 cut(s)	403, 417, 529, 592, 826
SseBI	AGGCCT	1 cut(s)	118
SspMI	CTAG	2 cut(s)	246, 777
StuI	AGGCCT	1 cut(s)	118
StyD4I	CCNGG	1 cut(s)	107
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	2 cut(s)	302, 481
TaqI	TCGA	5 cut(s)	13, 41, 97, 144, 524
TasI	AATT	5 cut(s)	403, 417, 529, 592, 826
Tru1I	TTAA	3 cut(s)	137, 416, 851
Tru9I	TTAA	3 cut(s)	137, 416, 851
TscAI	CASTG	1 cut(s)	394
TseI	GCWGC	1 cut(s)	202
TspDTI	ATGAA	4 cut(s)	586, 591, 620, 643
TspGWI	ACGGA	1 cut(s)	690
TspRI	CASTG	1 cut(s)	394
Van91I	CCANNNNNTGG	1 cut(s)	368
VneI	GTGCAC	1 cut(s)	372
XagI	CCTNNNNNAGG	1 cut(s)	112
XapI	RAATTY	3 cut(s)	403, 529, 592
XbaI	TCTAGA	1 cut(s)	776
XmiI	GTMKAC	1 cut(s)	13
XspI	CTAG	2 cut(s)	246, 777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.