Rorug04G0346900

Belongs to the phosphohexose mutase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
51934509 .. 51934787
279 bp
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UTR
Exon/CDS
Intron
Rorug04G0346900.1

Sequence Viewer

Length: 279 bp
ATGGAGTTGTCTGATGTGAAGGGAATGCAAGATGCCGGGTTCAAACCACATATCAACCAAGTTTGCGACTTCCTTTGGCTTCAAGTGAAATCAGAGATGGGTTTGACTGAATATAGGTCAATTGATTGGAAGCATGAAGCTTACCCAGAATACCAAGACTTCTCAGTTCTTCCTTTCTTCTGTACCATGGAGTCGCCGAGAAAGTCCTCGAGCTTCGGAATCGGCTGGTTCTGGGTTTGTGGGTCGATGAAGCTCGCAAGTGAATCAGAGTGGGTCTGA

Protein Analysis

92

Amino Acids

10.74

Weight (kDa)

4.83

Isoelectric Point (pI)

50.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011020)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 184
AgsI TTSAA 2 cut(s) 43, 83
AluBI AGCT 3 cut(s) 140, 213, 253
AluI AGCT 3 cut(s) 140, 213, 253
Ama87I CYCGRG 1 cut(s) 208
AsuC2I CCSGG 1 cut(s) 37
AvaI CYCGRG 1 cut(s) 208
BccI CCATC 1 cut(s) 91
BcnI CCSGG 1 cut(s) 37
Bme1390I CCNGG 1 cut(s) 37
BmeT110I CYCGRG 1 cut(s) 208
BmrFI CCNGG 1 cut(s) 37
BmsI GCATC 1 cut(s) 22
BpuMI CCSGG 1 cut(s) 37
BsaJI CCNNGG 1 cut(s) 186
BseDI CCNNGG 1 cut(s) 186
BseMII CTCAG 1 cut(s) 177
BsiHKCI CYCGRG 1 cut(s) 208
BsiSI CCGG 1 cut(s) 36
BsmI GAATGC 1 cut(s) 30
BsoBI CYCGRG 1 cut(s) 208
Bsp19I CCATGG 1 cut(s) 186
BspCNI CTCAG 1 cut(s) 176
BssECI CCNNGG 1 cut(s) 186
BssT1I CCWWGG 1 cut(s) 186
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 1 cut(s) 163
BstDSI CCRYGG 1 cut(s) 186
BstSCI CCNGG 1 cut(s) 35
BtgI CCRYGG 1 cut(s) 186
Cac8I GCNNGC 1 cut(s) 255
Csp6I GTAC 1 cut(s) 183
CviAII CATG 2 cut(s) 134, 187
CviJI RGCY 5 cut(s) 79, 140, 213, 225, 253
CviKI_1 RGCY 5 cut(s) 79, 140, 213, 225, 253
CviQI GTAC 1 cut(s) 183
DdeI CTNAG 1 cut(s) 163
Eco130I CCWWGG 1 cut(s) 186
Eco88I CYCGRG 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 2 cut(s) 137, 190
FaiI YATR 4 cut(s) 51, 114, 135, 188
FatI CATG 2 cut(s) 133, 186
HapII CCGG 1 cut(s) 36
Hin1II CATG 2 cut(s) 137, 190
HindIII AAGCTT 1 cut(s) 138
HinfI GANTC 3 cut(s) 191, 219, 263
HpaII CCGG 1 cut(s) 36
Hpy188I TCNGA 5 cut(s) 13, 94, 218, 268, 278
HpyAV CCTTC 1 cut(s) 13
HpyCH4V TGCA 1 cut(s) 28
HpyF3I CTNAG 1 cut(s) 163
Hsp92II CATG 2 cut(s) 137, 190
LpnPI CCDG 4 cut(s) 49, 159, 211, 217
LweI GCATC 1 cut(s) 22
MboII GAAGA 2 cut(s) 161, 169
MfeI CAATTG 1 cut(s) 120
MluCI AATT 1 cut(s) 120
MlyI GAGTC 1 cut(s) 200
MnlI CCTC 1 cut(s) 217
MspI CCGG 1 cut(s) 36
MspR9I CCNGG 1 cut(s) 37
MunI CAATTG 1 cut(s) 120
Mva1269I GAATGC 1 cut(s) 30
NciI CCSGG 1 cut(s) 37
NcoI CCATGG 1 cut(s) 186
NlaIII CATG 2 cut(s) 137, 190
NmeAIII GCCGAG 1 cut(s) 222
PaeR7I CTCGAG 1 cut(s) 208
PctI GAATGC 1 cut(s) 30
PfeI GAWTC 2 cut(s) 219, 263
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
PspXI VCTCGAGB 1 cut(s) 208
RsaI GTAC 1 cut(s) 184
RsaNI GTAC 1 cut(s) 183
SchI GAGTC 1 cut(s) 200
ScrFI CCNGG 1 cut(s) 37
SetI ASST 4 cut(s) 119, 142, 215, 255
SfaNI GCATC 1 cut(s) 22
Sfr274I CTCGAG 1 cut(s) 208
SlaI CTCGAG 1 cut(s) 208
SmlI CTYRAG 1 cut(s) 208
SmoI CTYRAG 1 cut(s) 208
Sse9I AATT 1 cut(s) 120
StyD4I CCNGG 1 cut(s) 35
StyI CCWWGG 1 cut(s) 186
TaqI TCGA 2 cut(s) 209, 245
TasI AATT 1 cut(s) 120
TfiI GAWTC 2 cut(s) 219, 263
TspDTI ATGAA 2 cut(s) 150, 263
XhoI CTCGAG 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.