Rorug05G0068300

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0032381
Physical Location & Seq
Forward (+)
5846717 .. 5847462
746 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0068300.1

Sequence Viewer

Length: 645 bp
ATGGCTGCAGCAGTAGTTCTATGCGGAAACAAGAGGTCATTCTTCGAAGAAGATGTGTTTCCTTCATCGCTTCATCGATCCAAAAGACTTCGATGCTCTTCTTCTTCGGTTCCTCCTCAACATGTCAATCAACTTCGTCGTCCCGCTGAGGAACCCGAACCTGATCGTTTCGGAAAGAGAGCGAAACTGACTAATGAGAATCTGAACAATAACCTTAATGGTGCGGAGGAATGGGTCGAGTTGTTTGTTAGAGAGATGAGCAGTGCCACCAGCGTCGACGATGCCAAGGCACGTACTGCAAAGGCGCTTGAGGTCTTTGAACAATGGATCAGCTCACGTACTGCCGCCGAGGCTGAGGTGGCAGCCGCCCAGAAGGAGGAGGAGAATATGGTGCTGAAACAAGCTATGGAAGAAATTCAAAAGGAGAATATGATTCTGAAACGAGGCGTGTTTATCCAGAACGAGCGTCTTAAAGAATTTGAGGGCCGAAACCAAGAATTGGAGCATGTGAAGCAGTTGGTGAATCAATATAAGGAGAAAGTGAGCGAACTTGAAGTTGCCAACTATGGCTTGGAACTGCACCTAAAGCAAGCTCAGCAATGCAACAACTCCATCCCTCTAAGTTTCCATCCTCATGTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

214

Amino Acids

24.52

Weight (kDa)

5.94

Isoelectric Point (pI)

52.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0032381)

Species Orthologous Gene IDs
rosa_rugosa Rorug05G0067900 Rorug05G0068300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 499
AccI GTMKAC 1 cut(s) 276
AciI CCGC 5 cut(s) 24, 144, 224, 345, 366
AclWI GGATC 2 cut(s) 72, 335
AcsI RAATTY 2 cut(s) 414, 476
AfaI GTAC 2 cut(s) 295, 340
AfiI CCNNNNNNNGG 2 cut(s) 376, 499
AflIII ACRYGT 1 cut(s) 121
AgsI TTSAA 3 cut(s) 320, 419, 554
AluBI AGCT 3 cut(s) 333, 404, 593
AluI AGCT 3 cut(s) 333, 404, 593
AlwI GGATC 2 cut(s) 72, 335
AoxI GGCC 1 cut(s) 484
ApeKI GCWGC 3 cut(s) 5, 8, 362
ApoI RAATTY 2 cut(s) 414, 476
Asp700I GAANNNNTTC 1 cut(s) 414
AspLEI GCGC 1 cut(s) 307
AspS9I GGNCC 1 cut(s) 484
AsuHPI GGTGA 1 cut(s) 532
AsuII TTCGAA 1 cut(s) 45
BbvCI CCTCAGC 2 cut(s) 147, 354
BbvI GCAGC 2 cut(s) 20, 374
BccI CCATC 2 cut(s) 620, 636
BfmI CTRYAG 1 cut(s) 6
BfoI RGCGCY 1 cut(s) 308
BglI GCCNNNNNGGC 1 cut(s) 350
BisI GCNGC 5 cut(s) 6, 9, 345, 363, 366
BlpI GCTNAGC 1 cut(s) 594
BlsI GCNGC 5 cut(s) 7, 10, 346, 364, 367
BmgT120I GGNCC 1 cut(s) 484
BmiI GGNNCC 2 cut(s) 111, 153
BmsI GCATC 2 cut(s) 83, 271
Bpu10I CCTNAGC 2 cut(s) 147, 354
Bpu1102I GCTNAGC 1 cut(s) 594
Bpu14I TTCGAA 1 cut(s) 45
BpuEI CTTGAG 1 cut(s) 329
Bsa29I ATCGAT 1 cut(s) 76
BsaAI YACGTR 2 cut(s) 293, 338
BsaJI CCNNGG 2 cut(s) 285, 348
Bsc4I CCNNNNNNNGG 2 cut(s) 376, 499
Bse3DI GCAATG 1 cut(s) 605
BseCI ATCGAT 1 cut(s) 76
BseDI CCNNGG 2 cut(s) 285, 348
BseGI GGATG 2 cut(s) 612, 628
BseLI CCNNNNNNNGG 2 cut(s) 376, 499
BseMI GCAATG 1 cut(s) 605
BseMII CTCAG 3 cut(s) 138, 345, 608
BseRI GAGGAG 3 cut(s) 105, 392, 395
BseXI GCAGC 2 cut(s) 20, 374
BsgI GTGCAG 1 cut(s) 563
BshFI GGCC 1 cut(s) 486
BshVI ATCGAT 1 cut(s) 76
BslFI GGGAC 1 cut(s) 126
BslI CCNNNNNNNGG 2 cut(s) 376, 499
BsmFI GGGAC 1 cut(s) 126
BsnI GGCC 1 cut(s) 486
Bsp119I TTCGAA 1 cut(s) 45
Bsp143I GATC 3 cut(s) 77, 163, 327
Bsp1720I GCTNAGC 1 cut(s) 594
BspACI CCGC 5 cut(s) 24, 144, 224, 345, 366
BspANI GGCC 1 cut(s) 486
BspCNI CTCAG 3 cut(s) 139, 346, 607
BspDI ATCGAT 1 cut(s) 76
BspLI GGNNCC 2 cut(s) 111, 153
BspMAI CTGCAG 1 cut(s) 10
BspPI GGATC 2 cut(s) 72, 335
BspQI GCTCTTC 1 cut(s) 103
BspT104I TTCGAA 1 cut(s) 45
BsrDI GCAATG 1 cut(s) 605
BssECI CCNNGG 2 cut(s) 285, 348
BssMI GATC 3 cut(s) 77, 163, 327
BssT1I CCWWGG 1 cut(s) 285
Bst6I CTCTTC 1 cut(s) 103
BstAPI GCANNNNNTGC 1 cut(s) 296
BstBAI YACGTR 2 cut(s) 293, 338
BstBI TTCGAA 1 cut(s) 45
BstC8I GCNNGC 1 cut(s) 591
BstDEI CTNAG 4 cut(s) 147, 354, 594, 620
BstF5I GGATG 2 cut(s) 612, 628
BstH2I RGCGCY 1 cut(s) 308
BstHHI GCGC 1 cut(s) 307
BstKTI GATC 3 cut(s) 80, 166, 330
BstMBI GATC 3 cut(s) 77, 163, 327
BstMWI GCNNNNNNNGC 6 cut(s) 296, 350, 359, 511, 586, 595
BstNSI RCATGY 2 cut(s) 125, 509
BstSFI CTRYAG 1 cut(s) 6
BstV1I GCAGC 2 cut(s) 20, 374
Bsu15I ATCGAT 1 cut(s) 76
BsuRI GGCC 1 cut(s) 486
BsuTUI ATCGAT 1 cut(s) 76
BtgZI GCGATG 1 cut(s) 51
BtsCI GGATG 2 cut(s) 612, 628
BtsI GCAGTG 1 cut(s) 268
BtsIMutI CAGTG 1 cut(s) 268
Cac8I GCNNGC 1 cut(s) 591
CfoI GCGC 1 cut(s) 307
Cfr13I GGNCC 1 cut(s) 484
ClaI ATCGAT 1 cut(s) 76
CseI GACGC 2 cut(s) 262, 455
Csp6I GTAC 2 cut(s) 294, 339
CviAII CATG 3 cut(s) 122, 506, 635
CviJI RGCY 8 cut(s) 5, 333, 353, 365, 404, 486, 570, 593
CviKI_1 RGCY 8 cut(s) 5, 333, 353, 365, 404, 486, 570, 593
CviQI GTAC 2 cut(s) 294, 339
DdeI CTNAG 4 cut(s) 147, 354, 594, 620
DpnI GATC 3 cut(s) 79, 165, 329
DpnII GATC 3 cut(s) 77, 163, 327
Eam1104I CTCTTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 285
EcoT14I CCWWGG 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 285
FaeI CATG 3 cut(s) 125, 509, 638
FaiI YATR 9 cut(s) 22, 123, 389, 407, 431, 507, 531, 567, 636
FaqI GGGAC 1 cut(s) 126
FatI CATG 3 cut(s) 121, 505, 634
FauI CCCGC 1 cut(s) 151
FblI GTMKAC 1 cut(s) 276
Fnu4HI GCNGC 5 cut(s) 6, 9, 345, 363, 366
FokI GGATG 2 cut(s) 599, 615
Fsp4HI GCNGC 5 cut(s) 6, 9, 345, 363, 366
GlaI GCGC 1 cut(s) 306
GluI GCNGC 5 cut(s) 6, 9, 345, 363, 366
HaeII RGCGCY 1 cut(s) 308
HaeIII GGCC 1 cut(s) 486
HgaI GACGC 2 cut(s) 262, 455
HhaI GCGC 1 cut(s) 307
Hin1II CATG 3 cut(s) 125, 509, 638
Hin6I GCGC 1 cut(s) 305
HinP1I GCGC 1 cut(s) 305
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HinfI GANTC 3 cut(s) 199, 433, 523
HphI GGTGA 1 cut(s) 532
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 3 cut(s) 173, 204, 438
Hpy188III TCNNGA 1 cut(s) 457
Hpy8I GTNNAC 1 cut(s) 277
Hpy99I CGWCG 3 cut(s) 141, 278, 281
HpyAV CCTTC 2 cut(s) 72, 367
HpyCH4IV ACGT 2 cut(s) 292, 337
HpyCH4V TGCA 4 cut(s) 8, 299, 580, 603
HpyF10VI GCNNNNNNNGC 6 cut(s) 296, 350, 359, 511, 586, 595
HpyF3I CTNAG 4 cut(s) 147, 354, 594, 620
HpySE526I ACGT 2 cut(s) 292, 337
Hsp92II CATG 3 cut(s) 125, 509, 638
HspAI GCGC 1 cut(s) 305
Kzo9I GATC 3 cut(s) 77, 163, 327
LguI GCTCTTC 1 cut(s) 103
LmnI GCTCC 1 cut(s) 502
LpnPI CCDG 4 cut(s) 174, 283, 383, 470
Lsp1109I GCAGC 2 cut(s) 20, 374
LweI GCATC 2 cut(s) 83, 271
MaeII ACGT 2 cut(s) 292, 337
MalI GATC 3 cut(s) 79, 165, 329
MboI GATC 3 cut(s) 77, 163, 327
MboII GAAGA 7 cut(s) 34, 59, 62, 90, 93, 96, 422
MluCI AATT 3 cut(s) 414, 476, 497
MroXI GAANNNNTTC 1 cut(s) 414
MseI TTAA 2 cut(s) 216, 471
MslI CAYNNNNRTG 1 cut(s) 633
MspA1I CMGCKG 1 cut(s) 146
MwoI GCNNNNNNNGC 6 cut(s) 296, 350, 359, 511, 586, 595
NdeII GATC 3 cut(s) 77, 163, 327
NlaIII CATG 3 cut(s) 125, 509, 638
NlaIV GGNNCC 2 cut(s) 111, 153
NmeAIII GCCGAG 1 cut(s) 373
NspI RCATGY 2 cut(s) 125, 509
NspV TTCGAA 1 cut(s) 45
PciI ACATGT 1 cut(s) 121
PciSI GCTCTTC 1 cut(s) 103
PdmI GAANNNNTTC 1 cut(s) 414
PfeI GAWTC 3 cut(s) 199, 433, 523
PflMI CCANNNNNTGG 1 cut(s) 499
PkrI GCNGC 5 cut(s) 7, 10, 346, 364, 367
Ppu21I YACGTR 2 cut(s) 293, 338
PscI ACATGT 1 cut(s) 121
PspN4I GGNNCC 2 cut(s) 111, 153
PspPI GGNCC 1 cut(s) 484
PstI CTGCAG 1 cut(s) 10
RsaI GTAC 2 cut(s) 295, 340
RsaNI GTAC 2 cut(s) 294, 339
RseI CAYNNNNRTG 1 cut(s) 633
SalI GTCGAC 1 cut(s) 275
SapI GCTCTTC 1 cut(s) 103
SaqAI TTAA 2 cut(s) 216, 471
SatI GCNGC 5 cut(s) 6, 9, 345, 363, 366
Sau3AI GATC 3 cut(s) 77, 163, 327
Sau96I GGNCC 1 cut(s) 484
SfaNI GCATC 2 cut(s) 83, 271
SfcI CTRYAG 1 cut(s) 6
SfuI TTCGAA 1 cut(s) 45
SgrDI CGTCGACG 1 cut(s) 275
SmiMI CAYNNNNRTG 1 cut(s) 633
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
Sse9I AATT 3 cut(s) 414, 476, 497
SsiI CCGC 5 cut(s) 24, 144, 224, 345, 366
StyI CCWWGG 1 cut(s) 285
TaiI ACGT 2 cut(s) 295, 340
TaqI TCGA 5 cut(s) 45, 76, 91, 237, 276
TasI AATT 3 cut(s) 414, 476, 497
TauI GCSGC 2 cut(s) 347, 368
TfiI GAWTC 3 cut(s) 199, 433, 523
Tru1I TTAA 2 cut(s) 216, 471
Tru9I TTAA 2 cut(s) 216, 471
TscAI CASTG 1 cut(s) 268
TseI GCWGC 3 cut(s) 5, 8, 362
TspDTI ATGAA 2 cut(s) 54, 62
TspRI CASTG 1 cut(s) 268
Van91I CCANNNNNTGG 1 cut(s) 499
XapI RAATTY 2 cut(s) 414, 476
XceI RCATGY 2 cut(s) 125, 509
XcmI CCANNNNNNNNNTGG 1 cut(s) 568
XmiI GTMKAC 1 cut(s) 276
XmnI GAANNNNTTC 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.