Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0018481

Physical Location & Seq

Genomic Coordinates Reverse (-)

67424110 .. 67427777

Gene Structure 3668 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0491300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

ATGTGTTTCAAAGAGTTTTTCAACAAAAGATATGATAAAAACCACACCAGCCGGCCTAAACCTCAGGAAATGAAGAAAGCTCAAAGTCCTCATAACCAGAGGAATCAGTTTTCCAATTTTCACTTTGAAGATGACAAGAATAATAAAACCAAGCAACAGAGTGGAAGCCGTTCTGCCCTGAAGCATATGAAGGCTGCAGTGAAGAAAGTTTTCATAGTTCTTTTCTTTCGAAGAAAGGTCAACTCAAAGGCTGCTGCTTCTGCTTCTGTAATTGATCCAAGAAGAAACAGTAATAGAATCAGAGGAGTTTCATCTTCAACCGATGGTTCATTGGGGAGTACTGACACTAAGAACTCATCAAAGCTCAAGTTATCTGGGTCTTCTGGTTCTTCTACTACTCAGATTGGAGTAATTGAGACGACAAATTTCTCCTACGAAGAGATTTCTAAGGCAACCGAAAAGTTCTCTCAAGCAAATAAAATTGGTGAGGGTGCTTTTGGGACAGTGTACAGGGGAAGGCTCGGGGATGGATCTCTTGTTGCTGTAAAGCGTGCCAAGAAGACAGTATCTGACAAGCTCTTAGCATTGGAGTTCAAGAATGAAATACTCACCTTGTCCATGATTGAGCATCTGAATTTGGTAAGATTATATGGATATTTGGAGCATGGGGACGAGCGGATTATTTTGGTTGAATATGTTGGCAACGGAACACTACGGGAACATCTGGATGGTACACGCGGAAATGGACTTGAAATTGCAGAACGGTTAGACATCGCAATTGATGTGGCTCATGCAATTACCTATCTTCACACGTACACAGATCCTCCAATAATCCACAGAGACATAAAATCATTAAACATCCTCATCACAGAGAAATTACGGGCGAAAGTAGCAGACTTTGGGTTTGCACGATTGTCTGCAGACCCTGATGCAACTCATATTTCAACTCAGATTAAAGGAACGGCAGGCTACTTGGATCCTGAGTACCTCAAGACTTATCAGCTCACCGAAAAGAGTGATGTTTACTCCTTTGGTGTGTTGCTTGTAGAGCTGATGACAGGAAGACGACCCATCGAACCCACCAAACCAAACAATGAAAGATTAACAACAAGATGGGCAATCCAAACATTGAAACGAGGAGAAGCTATACTTGTCATGGATCCAAGGCTACGGAGAAGTGCGGCATCAACCATGGCAATGGAGAAAATCCTCAGGCTAGCTCACGAGTGCCTTGCACCTTTAAGACAATCAAGACCCTCCATGAAAAAATGTGCTGAAGTATTATGGGGGATTCGCAAGGAATTCAGAGAGAAAGCCTTCCCTGCTCCTCCTCCTCCAACTTCTCACTACTCTGACAATTTTCCTGTGAGAGATGCTAAGATGACTAGGCACCAGACTTTTGGAATTGAAGATGGTGATAGCTATAAATTTATCTCAGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0016020 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0046903 GO:0051179 GO:0051234 GO:0055044 GO:0071836 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 S6PP Sucrose_synth

Protein Analysis

480

Amino Acids

54.05

Weight (kDa)

9.73

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	156 - 429	1.7e-47	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	157 - 428	1.7e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018481)

Species	Orthologous Gene IDs
malus_domestica	MD10G1002400.v1.1
rosa_chinensis	RchiOBHm_Chr4g0401661 RchiOBHm_Chr5g0028781 RchiOBHm_Chr7g0223591
rosa_roxburghii	Rroxscaffold_7G00171440 Rroxscaffold_7G00178680
rosa_rugosa	Rorug02G0435600 Rorug05G0491300 Rorug05G0491400
rosa_samantha	Rh4CG187600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1389
AccBSI	CCGCTC	1 cut(s)	676
AccII	CGCG	1 cut(s)	738
AciI	CCGC	3 cut(s)	676, 738, 1181
AclWI	GGATC	7 cut(s)	269, 538, 815, 971, 984, 1154, 1167
AcsI	RAATTY	4 cut(s)	424, 634, 1301, 1427
AcuI	CTGAAG	2 cut(s)	200, 1296
AfaI	GTAC	5 cut(s)	340, 509, 733, 815, 986
AflIII	ACRYGT	1 cut(s)	810
AluBI	AGCT	8 cut(s)	80, 364, 577, 1003, 1051, 1145, 1220, 1422
AluI	AGCT	8 cut(s)	80, 364, 577, 1003, 1051, 1145, 1220, 1422
Alw26I	GTCTC	2 cut(s)	410, 834
AlwI	GGATC	7 cut(s)	269, 538, 815, 971, 984, 1154, 1167
AlwNI	CAGNNNCTG	2 cut(s)	569, 926
Ama87I	CYCGRG	1 cut(s)	521
AoxI	GGCC	1 cut(s)	53
ApeKI	GCWGC	3 cut(s)	194, 251, 254
ApoI	RAATTY	4 cut(s)	424, 634, 1301, 1427
ArsI	GACNNNNNNTTYG	2 cut(s)	887, 919
Asp700I	GAANNNNTTC	3 cut(s)	169, 209, 1316
AsuHPI	GGTGA	4 cut(s)	497, 601, 997, 1427
AsuII	TTCGAA	1 cut(s)	229
AsuNHI	GCTAGC	1 cut(s)	1216
AvaI	CYCGRG	1 cut(s)	521
AxyI	CCTNAGG	2 cut(s)	63, 1211
BamHI	GGATCC	2 cut(s)	976, 1159
BanI	GGYRCC	1 cut(s)	1389
BauI	CACGAG	1 cut(s)	1223
BbsI	GAAGAC	3 cut(s)	372, 566, 1069
BbvI	GCAGC	3 cut(s)	181, 238, 241
BccI	CCATC	6 cut(s)	317, 521, 722, 1079, 1107, 1406
BceAI	ACGGC	2 cut(s)	153, 978
BcgI	CGANNNNNNTGC	2 cut(s)	1214, 1248
BcoDI	GTCTC	2 cut(s)	410, 834
BfaI	CTAG	2 cut(s)	1217, 1386
BfmI	CTRYAG	2 cut(s)	195, 918
BisI	GCNGC	4 cut(s)	195, 252, 255, 1182
BlsI	GCNGC	4 cut(s)	196, 253, 256, 1183
BmcAI	AGTACT	1 cut(s)	340
BmeT110I	CYCGRG	1 cut(s)	521
BmiI	GGNNCC	3 cut(s)	978, 1161, 1391
BmsI	GCATC	4 cut(s)	637, 919, 1193, 1363
BmtI	GCTAGC	1 cut(s)	1220
BpiI	GAAGAC	3 cut(s)	372, 566, 1069
Bpu14I	TTCGAA	1 cut(s)	229
BpuEI	CTTGAG	3 cut(s)	350, 453, 974
BsaAI	YACGTR	1 cut(s)	813
BsaJI	CCNNGG	2 cut(s)	1163, 1191
BsaXI	ACNNNNNCTCC	2 cut(s)	808, 838
Bse118I	RCCGGY	1 cut(s)	51
Bse21I	CCTNAGG	2 cut(s)	63, 1211
Bse3DI	GCAATG	1 cut(s)	1203
BseDI	CCNNGG	2 cut(s)	1163, 1191
BseGI	GGATG	3 cut(s)	532, 733, 858
BseMI	GCAATG	1 cut(s)	1203
BseMII	CTCAG	5 cut(s)	77, 413, 962, 972, 1225
BseRI	GAGGAG	5 cut(s)	318, 1152, 1317, 1320, 1323
BseXI	GCAGC	3 cut(s)	181, 238, 241
Bsh1236I	CGCG	1 cut(s)	738
BshFI	GGCC	1 cut(s)	55
BshNI	GGYRCC	1 cut(s)	1389
BsiHKCI	CYCGRG	1 cut(s)	521
BsiSI	CCGG	1 cut(s)	52
BslFI	GGGAC	2 cut(s)	514, 683
BsmAI	GTCTC	2 cut(s)	410, 834
BsmBI	CGTCTC	1 cut(s)	410
BsmFI	GGGAC	2 cut(s)	514, 683
BsnI	GGCC	1 cut(s)	55
BsoBI	CYCGRG	1 cut(s)	521
Bsp119I	TTCGAA	1 cut(s)	229
Bsp1407I	TGTACA	1 cut(s)	507
Bsp143I	GATC	5 cut(s)	274, 530, 820, 976, 1159
Bsp19I	CCATGG	1 cut(s)	1191
BspACI	CCGC	3 cut(s)	676, 738, 1181
BspANI	GGCC	1 cut(s)	55
BspCNI	CTCAG	5 cut(s)	76, 412, 961, 973, 1224
BspFNI	CGCG	1 cut(s)	738
BspLI	GGNNCC	3 cut(s)	978, 1161, 1391
BspMAI	CTGCAG	2 cut(s)	199, 922
BspOI	GCTAGC	1 cut(s)	1220
BspPI	GGATC	7 cut(s)	269, 538, 815, 971, 984, 1154, 1167
BspT104I	TTCGAA	1 cut(s)	229
BspT107I	GGYRCC	1 cut(s)	1389
BsrBI	CCGCTC	1 cut(s)	676
BsrDI	GCAATG	1 cut(s)	1203
BsrFI	RCCGGY	1 cut(s)	51
BsrGI	TGTACA	1 cut(s)	507
BssAI	RCCGGY	1 cut(s)	51
BssECI	CCNNGG	2 cut(s)	1163, 1191
BssMI	GATC	5 cut(s)	274, 530, 820, 976, 1159
BssSI	CACGAG	1 cut(s)	1223
BssT1I	CCWWGG	2 cut(s)	1163, 1191
Bst2BI	CACGAG	1 cut(s)	1223
Bst4CI	ACNGT	4 cut(s)	290, 505, 565, 765
Bst6I	CTCTTC	1 cut(s)	432
BstAUI	TGTACA	1 cut(s)	507
BstBAI	YACGTR	1 cut(s)	813
BstBI	TTCGAA	1 cut(s)	229
BstC8I	GCNNGC	4 cut(s)	53, 552, 967, 1218
BstDSI	CCRYGG	1 cut(s)	1191
BstF5I	GGATG	3 cut(s)	532, 733, 858
BstFNI	CGCG	1 cut(s)	738
BstKTI	GATC	5 cut(s)	277, 533, 823, 979, 1162
BstMAI	GTCTC	2 cut(s)	410, 834
BstMBI	GATC	5 cut(s)	274, 530, 820, 976, 1159
BstMWI	GCNNNNNNNGC	4 cut(s)	260, 890, 1048, 1322
BstSFI	CTRYAG	2 cut(s)	195, 918
BstUI	CGCG	1 cut(s)	738
BstV1I	GCAGC	3 cut(s)	181, 238, 241
BstV2I	GAAGAC	3 cut(s)	372, 566, 1069
BstX2I	RGATCY	4 cut(s)	530, 820, 976, 1159
BstXI	CCANNNNNNTGG	2 cut(s)	1198, 1400
BstYI	RGATCY	4 cut(s)	530, 820, 976, 1159
Bsu36I	CCTNAGG	2 cut(s)	63, 1211
BsuRI	GGCC	1 cut(s)	55
BtgI	CCRYGG	1 cut(s)	1191
BtgZI	GCGATG	1 cut(s)	757
BtsCI	GGATG	3 cut(s)	532, 733, 858
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	2 cut(s)	204, 510
Cac8I	GCNNGC	4 cut(s)	53, 552, 967, 1218
CaiI	CAGNNNCTG	2 cut(s)	569, 926
Cfr10I	RCCGGY	1 cut(s)	51
Csp6I	GTAC	5 cut(s)	339, 508, 732, 814, 985
CspCI	CAANNNNNGTGG	2 cut(s)	765, 800
CviAII	CATG	6 cut(s)	619, 665, 791, 1156, 1192, 1261
CviQI	GTAC	5 cut(s)	339, 508, 732, 814, 985
DpnI	GATC	5 cut(s)	276, 532, 822, 978, 1161
DpnII	GATC	5 cut(s)	274, 530, 820, 976, 1159
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
Eco130I	CCWWGG	2 cut(s)	1163, 1191
Eco57I	CTGAAG	2 cut(s)	200, 1296
Eco81I	CCTNAGG	2 cut(s)	63, 1211
Eco88I	CYCGRG	1 cut(s)	521
EcoRI	GAATTC	1 cut(s)	1301
EcoT14I	CCWWGG	2 cut(s)	1163, 1191
ErhI	CCWWGG	2 cut(s)	1163, 1191
Esp3I	CGTCTC	1 cut(s)	410
FaeI	CATG	6 cut(s)	622, 668, 794, 1159, 1195, 1264
FalI	AAGNNNNNCTT	2 cut(s)	1134, 1166
FaqI	GGGAC	2 cut(s)	514, 683
FatI	CATG	6 cut(s)	618, 664, 790, 1155, 1191, 1260
FauNDI	CATATG	1 cut(s)	186
Fnu4HI	GCNGC	4 cut(s)	195, 252, 255, 1182
FokI	GGATG	3 cut(s)	539, 740, 845
Fsp4HI	GCNGC	4 cut(s)	195, 252, 255, 1182
FspBI	CTAG	2 cut(s)	1217, 1386
GluI	GCNGC	4 cut(s)	195, 252, 255, 1182
HaeIII	GGCC	1 cut(s)	55
HapII	CCGG	1 cut(s)	52
Hin1II	CATG	6 cut(s)	622, 668, 794, 1159, 1195, 1264
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HinfI	GANTC	3 cut(s)	103, 297, 1291
HpaII	CCGG	1 cut(s)	52
HphI	GGTGA	4 cut(s)	497, 601, 997, 1427
Hpy166II	GTNNAC	5 cut(s)	241, 508, 734, 816, 1024
Hpy188I	TCNGA	7 cut(s)	302, 402, 571, 633, 951, 1307, 1354
Hpy188III	TCNNGA	7 cut(s)	65, 595, 725, 980, 991, 1223, 1251
Hpy8I	GTNNAC	5 cut(s)	241, 508, 734, 816, 1024
HpyAV	CCTTC	3 cut(s)	184, 510, 1327
HpyCH4III	ACNGT	4 cut(s)	290, 505, 565, 765
HpyCH4IV	ACGT	1 cut(s)	812
HpyCH4V	TGCA	7 cut(s)	197, 758, 794, 908, 920, 932, 1235
HpyF10VI	GCNNNNNNNGC	4 cut(s)	260, 890, 1048, 1322
HpySE526I	ACGT	1 cut(s)	812
Hsp92II	CATG	6 cut(s)	622, 668, 794, 1159, 1195, 1264
KroI	GCCGGC	1 cut(s)	51
KroNI	GCCGGC	1 cut(s)	53
Kzo9I	GATC	5 cut(s)	274, 530, 820, 976, 1159
LmnI	GCTCC	2 cut(s)	661, 1330
Lsp1109I	GCAGC	3 cut(s)	181, 238, 241
LweI	GCATC	4 cut(s)	637, 919, 1193, 1363
MaeI	CTAG	2 cut(s)	1217, 1386
MaeII	ACGT	1 cut(s)	812
MalI	GATC	5 cut(s)	276, 532, 822, 978, 1161
MbiI	CCGCTC	1 cut(s)	676
MboI	GATC	5 cut(s)	274, 530, 820, 976, 1159
MfeI	CAATTG	1 cut(s)	777
MflI	RGATCY	4 cut(s)	530, 820, 976, 1159
MmeI	TCCRAC	1 cut(s)	1361
MroNI	GCCGGC	1 cut(s)	51
MroXI	GAANNNNTTC	3 cut(s)	169, 209, 1316
MseI	TTAA	4 cut(s)	854, 954, 1103, 1241
MslI	CAYNNNNRTG	2 cut(s)	726, 1196
MspI	CCGG	1 cut(s)	52
MunI	CAATTG	1 cut(s)	777
MvnI	CGCG	1 cut(s)	738
MwoI	GCNNNNNNNGC	4 cut(s)	260, 890, 1048, 1322
NaeI	GCCGGC	1 cut(s)	53
NcoI	CCATGG	1 cut(s)	1191
NdeI	CATATG	1 cut(s)	186
NdeII	GATC	5 cut(s)	274, 530, 820, 976, 1159
NgoMIV	GCCGGC	1 cut(s)	51
NheI	GCTAGC	1 cut(s)	1216
NlaIII	CATG	6 cut(s)	622, 668, 794, 1159, 1195, 1264
NlaIV	GGNNCC	3 cut(s)	978, 1161, 1391
NspV	TTCGAA	1 cut(s)	229
PdiI	GCCGGC	1 cut(s)	53
PdmI	GAANNNNTTC	3 cut(s)	169, 209, 1316
PfeI	GAWTC	3 cut(s)	103, 297, 1291
PkrI	GCNGC	4 cut(s)	196, 253, 256, 1183
Ppu21I	YACGTR	1 cut(s)	813
PspN4I	GGNNCC	3 cut(s)	978, 1161, 1391
PstI	CTGCAG	2 cut(s)	199, 922
PstNI	CAGNNNCTG	2 cut(s)	569, 926
PsuI	RGATCY	4 cut(s)	530, 820, 976, 1159
RsaI	GTAC	5 cut(s)	340, 509, 733, 815, 986
RsaNI	GTAC	5 cut(s)	339, 508, 732, 814, 985
RseI	CAYNNNNRTG	2 cut(s)	726, 1196
SaqAI	TTAA	4 cut(s)	854, 954, 1103, 1241
SatI	GCNGC	4 cut(s)	195, 252, 255, 1182
Sau3AI	GATC	5 cut(s)	274, 530, 820, 976, 1159
ScaI	AGTACT	1 cut(s)	340
SfaNI	GCATC	4 cut(s)	637, 919, 1193, 1363
SfcI	CTRYAG	2 cut(s)	195, 918
SfuI	TTCGAA	1 cut(s)	229
SmiMI	CAYNNNNRTG	2 cut(s)	726, 1196
SmlI	CTYRAG	3 cut(s)	365, 468, 989
SmoI	CTYRAG	3 cut(s)	365, 468, 989
SsiI	CCGC	3 cut(s)	676, 738, 1181
SspMI	CTAG	2 cut(s)	1217, 1386
StyI	CCWWGG	2 cut(s)	1163, 1191
TaaI	ACNGT	4 cut(s)	290, 505, 565, 765
TaiI	ACGT	1 cut(s)	815
TaqI	TCGA	2 cut(s)	229, 1074
TatI	WGTACW	2 cut(s)	338, 507
TauI	GCSGC	1 cut(s)	1184
TfiI	GAWTC	3 cut(s)	103, 297, 1291
Tru1I	TTAA	4 cut(s)	854, 954, 1103, 1241
Tru9I	TTAA	4 cut(s)	854, 954, 1103, 1241
TscAI	CASTG	2 cut(s)	204, 510
TseI	GCWGC	3 cut(s)	194, 251, 254
TspDTI	ATGAA	8 cut(s)	86, 202, 203, 300, 318, 615, 1110, 1277
TspGWI	ACGGA	2 cut(s)	720, 1186
TspRI	CASTG	2 cut(s)	204, 510
XapI	RAATTY	4 cut(s)	424, 634, 1301, 1427
XmnI	GAANNNNTTC	3 cut(s)	169, 209, 1316
XspI	CTAG	2 cut(s)	1217, 1386
ZrmI	AGTACT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.