Rorug05G0516500

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0029832
Physical Location & Seq
Forward (+)
70094062 .. 70095101
1040 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0516500.1

Sequence Viewer

Length: 798 bp
ATGGGTAACGGATTGGGTGGAGTCCATGAAGTCCCGCAGGTGAGCGGGCCTGCTAAAGCACAATACCTTTTGTTACCTTCAGTTTATGAGCTTGAACCAGAAGTGATCGACTCTTTGAGGCAAAGTGTTCCAATCCCGGTTTACCATATTGGGCCTACCATACCCTACTTCAAAGTGGAAGCCCATTCAATGCCCAATGAGGATCACTATTTTGATTGGCTTGACAAGCAACCTAGAGGTTCAGTTTTGTATGTGTCACAAGGCAGTCTGCATTCACCTCCTCAAGCTCAAATGGATGAAATCGCCGCCGGGTTGAAGGCTAGCGGTGTTCGGTTCTTTTGGGTGGCACGTGAGGAAGTGTCGAAGCTGAAAGAGAAATGTGGTGACATGGGGATTGTGGTGCCTTGGTGTGACCAATTGACAGTGTTGTGCCATTCTTCTTTGGGTGGGTTTTGGTCACATTGTGGCTGGAATTCGACCTCTGAAGCTGTTTTTGCCGGTCTTCCGATGTTGACTTTTCCTATATATTGGGACCAAGTACCTAATAGTAAGATGATCGTTGAAGATTGGAAAATTGGGTGGAGGGTGAAGAAGGGTTCGGGAGAAGAAGGTTTGGTTAGTAGAGAAGAGATTGGTGGGCTTGTTAAAATTTTTATGGATTTGGAAAATGAGGAGGGGAAAGAAATGAGGAGAAGAGCAAGAGAGCTTAGTGAAATTTACAAACAAGCAATCAGAAATGGTGGGTCATCTTATAAAAGTGTTGAAGCCTTTATCAGTGACATATCAAAGATGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

265

Amino Acids

29.68

Weight (kDa)

5.7

Isoelectric Point (pI)

50.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 80 - 190 7e-16 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029832)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0155071
rosa_rugosa Rorug05G0516500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 753
AarI CACCTGC 1 cut(s) 28
Acc36I ACCTGC 1 cut(s) 28
AccB1I GGYRCC 1 cut(s) 400
AccBSI CCGCTC 1 cut(s) 45
AciI CCGC 4 cut(s) 35, 45, 306, 324
AclWI GGATC 1 cut(s) 210
AcsI RAATTY 3 cut(s) 472, 648, 714
AcuI CTGAAG 2 cut(s) 63, 504
AcvI CACGTG 1 cut(s) 350
AdeI CACNNNGTG 1 cut(s) 464
AfaI GTAC 1 cut(s) 540
AgsI TTSAA 6 cut(s) 95, 172, 189, 316, 563, 764
AluBI AGCT 5 cut(s) 91, 287, 367, 488, 706
AluI AGCT 5 cut(s) 91, 287, 367, 488, 706
AlwI GGATC 1 cut(s) 210
AoxI GGCC 2 cut(s) 47, 152
ApoI RAATTY 3 cut(s) 472, 648, 714
AspS9I GGNCC 3 cut(s) 47, 152, 532
AsuC2I CCSGG 2 cut(s) 137, 310
AsuHPI GGTGA 4 cut(s) 52, 267, 395, 598
AsuNHI GCTAGC 1 cut(s) 320
AvaII GGWCC 1 cut(s) 532
BanI GGYRCC 1 cut(s) 400
BbrPI CACGTG 1 cut(s) 350
BbsI GAAGAC 1 cut(s) 494
BcnI CCSGG 2 cut(s) 137, 310
BfaI CTAG 2 cut(s) 234, 321
BfuAI ACCTGC 1 cut(s) 28
BisI GCNGC 1 cut(s) 306
BlsI GCNGC 1 cut(s) 307
Bme1390I CCNGG 2 cut(s) 137, 310
Bme18I GGWCC 1 cut(s) 532
BmgT120I GGNCC 3 cut(s) 47, 152, 532
BmiI GGNNCC 2 cut(s) 402, 533
BmrFI CCNGG 2 cut(s) 137, 310
BmtI GCTAGC 1 cut(s) 324
BpiI GAAGAC 1 cut(s) 494
BpuEI CTTGAG 1 cut(s) 267
BpuMI CCSGG 2 cut(s) 137, 310
BsaAI YACGTR 1 cut(s) 350
BsaJI CCNNGG 1 cut(s) 404
Bse118I RCCGGY 1 cut(s) 497
BseDI CCNNGG 1 cut(s) 404
BseGI GGATG 1 cut(s) 301
BseRI GAGGAG 3 cut(s) 270, 686, 703
BshFI GGCC 2 cut(s) 49, 154
BshNI GGYRCC 1 cut(s) 400
BsiSI CCGG 3 cut(s) 137, 309, 498
BslFI GGGAC 2 cut(s) 17, 545
BsmFI GGGAC 2 cut(s) 17, 545
BsmI GAATGC 1 cut(s) 271
BsnI GGCC 2 cut(s) 49, 154
Bsp143I GATC 3 cut(s) 105, 202, 555
BspACI CCGC 4 cut(s) 35, 45, 306, 324
BspANI GGCC 2 cut(s) 49, 154
BspLI GGNNCC 2 cut(s) 402, 533
BspMI ACCTGC 1 cut(s) 28
BspOI GCTAGC 1 cut(s) 324
BspPI GGATC 1 cut(s) 210
BspQI GCTCTTC 1 cut(s) 688
BspT107I GGYRCC 1 cut(s) 400
BsrBI CCGCTC 1 cut(s) 45
BsrFI RCCGGY 1 cut(s) 497
BssAI RCCGGY 1 cut(s) 497
BssECI CCNNGG 1 cut(s) 404
BssMI GATC 3 cut(s) 105, 202, 555
BssT1I CCWWGG 1 cut(s) 404
Bst4CI ACNGT 1 cut(s) 424
Bst6I CTCTTC 2 cut(s) 621, 688
BstBAI YACGTR 1 cut(s) 350
BstC8I GCNNGC 3 cut(s) 47, 51, 322
BstDEI CTNAG 1 cut(s) 707
BstF5I GGATG 1 cut(s) 301
BstKTI GATC 3 cut(s) 108, 205, 558
BstMBI GATC 3 cut(s) 105, 202, 555
BstMWI GCNNNNNNNGC 2 cut(s) 226, 494
BstSCI CCNGG 2 cut(s) 135, 308
BstV2I GAAGAC 1 cut(s) 494
BsuRI GGCC 2 cut(s) 49, 154
BtsCI GGATG 1 cut(s) 301
BtsIMutI CAGTG 2 cut(s) 429, 781
BveI ACCTGC 1 cut(s) 28
Cac8I GCNNGC 3 cut(s) 47, 51, 322
Cfr10I RCCGGY 1 cut(s) 497
Cfr13I GGNCC 3 cut(s) 47, 152, 532
Csp6I GTAC 1 cut(s) 539
CviAII CATG 2 cut(s) 26, 388
CviQI GTAC 1 cut(s) 539
DdeI CTNAG 1 cut(s) 707
DpnI GATC 3 cut(s) 107, 204, 557
DpnII GATC 3 cut(s) 105, 202, 555
DraIII CACNNNGTG 1 cut(s) 464
Eam1104I CTCTTC 2 cut(s) 621, 688
EarI CTCTTC 2 cut(s) 621, 688
Eco130I CCWWGG 1 cut(s) 404
Eco47I GGWCC 1 cut(s) 532
Eco57I CTGAAG 2 cut(s) 63, 504
Eco72I CACGTG 1 cut(s) 350
EcoRI GAATTC 1 cut(s) 472
EcoT14I CCWWGG 1 cut(s) 404
ErhI CCWWGG 1 cut(s) 404
FaeI CATG 2 cut(s) 29, 391
FaqI GGGAC 2 cut(s) 17, 545
FatI CATG 2 cut(s) 25, 387
FauI CCCGC 2 cut(s) 38, 42
Fnu4HI GCNGC 1 cut(s) 306
FokI GGATG 1 cut(s) 308
Fsp4HI GCNGC 1 cut(s) 306
FspBI CTAG 2 cut(s) 234, 321
GluI GCNGC 1 cut(s) 306
HaeIII GGCC 2 cut(s) 49, 154
HapII CCGG 3 cut(s) 137, 309, 498
Hin1II CATG 2 cut(s) 29, 391
HincII GTYRAC 1 cut(s) 513
HindII GTYRAC 1 cut(s) 513
HinfI GANTC 2 cut(s) 21, 110
HpaII CCGG 3 cut(s) 137, 309, 498
HphI GGTGA 4 cut(s) 52, 267, 395, 598
Hpy166II GTNNAC 2 cut(s) 142, 513
Hpy188I TCNGA 3 cut(s) 484, 507, 734
Hpy188III TCNNGA 1 cut(s) 600
Hpy8I GTNNAC 2 cut(s) 142, 513
HpyAV CCTTC 4 cut(s) 87, 310, 586, 602
HpyCH4III ACNGT 1 cut(s) 424
HpyCH4IV ACGT 1 cut(s) 349
HpyCH4V TGCA 1 cut(s) 271
HpyF10VI GCNNNNNNNGC 2 cut(s) 226, 494
HpyF3I CTNAG 1 cut(s) 707
HpySE526I ACGT 1 cut(s) 349
Hsp92II CATG 2 cut(s) 29, 391
Kzo9I GATC 3 cut(s) 105, 202, 555
LguI GCTCTTC 1 cut(s) 688
LpnPI CCDG 7 cut(s) 23, 63, 111, 150, 322, 454, 511
MaeI CTAG 2 cut(s) 234, 321
MaeII ACGT 1 cut(s) 349
MaeIII GTNAC 7 cut(s) 5, 72, 255, 383, 410, 456, 776
MalI GATC 3 cut(s) 107, 204, 557
MbiI CCGCTC 1 cut(s) 45
MboI GATC 3 cut(s) 105, 202, 555
MboII GAAGA 7 cut(s) 429, 494, 575, 601, 617, 638, 705
MfeI CAATTG 1 cut(s) 416
MluCI AATT 5 cut(s) 416, 472, 573, 648, 714
MlyI GAGTC 2 cut(s) 30, 104
MseI TTAA 1 cut(s) 645
MspI CCGG 3 cut(s) 137, 309, 498
MspR9I CCNGG 2 cut(s) 137, 310
MunI CAATTG 1 cut(s) 416
Mva1269I GAATGC 1 cut(s) 271
MwoI GCNNNNNNNGC 2 cut(s) 226, 494
NciI CCSGG 2 cut(s) 137, 310
NdeII GATC 3 cut(s) 105, 202, 555
NheI GCTAGC 1 cut(s) 320
NlaIII CATG 2 cut(s) 29, 391
NlaIV GGNNCC 2 cut(s) 402, 533
NmuCI GTSAC 5 cut(s) 255, 383, 410, 456, 776
PaqCI CACCTGC 1 cut(s) 28
PciSI GCTCTTC 1 cut(s) 688
PctI GAATGC 1 cut(s) 271
PkrI GCNGC 1 cut(s) 307
PleI GAGTC 2 cut(s) 29, 104
PmaCI CACGTG 1 cut(s) 350
PmlI CACGTG 1 cut(s) 350
PpsI GAGTC 2 cut(s) 29, 104
Ppu21I YACGTR 1 cut(s) 350
PsiI TTATAA 1 cut(s) 753
PspCI CACGTG 1 cut(s) 350
PspN4I GGNNCC 2 cut(s) 402, 533
PspPI GGNCC 3 cut(s) 47, 152, 532
RsaI GTAC 1 cut(s) 540
RsaNI GTAC 1 cut(s) 539
SapI GCTCTTC 1 cut(s) 688
SaqAI TTAA 1 cut(s) 645
SatI GCNGC 1 cut(s) 306
Sau3AI GATC 3 cut(s) 105, 202, 555
Sau96I GGNCC 3 cut(s) 47, 152, 532
SchI GAGTC 2 cut(s) 30, 104
ScrFI CCNGG 2 cut(s) 137, 310
SinI GGWCC 1 cut(s) 532
SmlI CTYRAG 1 cut(s) 282
SmoI CTYRAG 1 cut(s) 282
Sse9I AATT 5 cut(s) 416, 472, 573, 648, 714
SsiI CCGC 4 cut(s) 35, 45, 306, 324
SspMI CTAG 2 cut(s) 234, 321
StyD4I CCNGG 2 cut(s) 135, 308
StyI CCWWGG 1 cut(s) 404
TaaI ACNGT 1 cut(s) 424
TaiI ACGT 1 cut(s) 352
TaqI TCGA 3 cut(s) 108, 362, 476
TasI AATT 5 cut(s) 416, 472, 573, 648, 714
TauI GCSGC 1 cut(s) 308
Tru1I TTAA 1 cut(s) 645
Tru9I TTAA 1 cut(s) 645
TscAI CASTG 2 cut(s) 429, 781
TseFI GTSAC 5 cut(s) 255, 383, 410, 456, 776
Tsp45I GTSAC 5 cut(s) 255, 383, 410, 456, 776
TspDTI ATGAA 2 cut(s) 42, 312
TspGWI ACGGA 1 cut(s) 24
TspRI CASTG 2 cut(s) 429, 781
VpaK11BI GGWCC 1 cut(s) 532
XapI RAATTY 3 cut(s) 472, 648, 714
XspI CTAG 2 cut(s) 234, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.