Rorug06G0102500

ABC transporter G family member 22-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0014657
Physical Location & Seq
Forward (+)
13642508 .. 13654201
11694 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0102500.1

Sequence Viewer

Length: 675 bp
ATGTCCACATCTTGTATCAGAATTTACACGTTTGTCAAGTTTCAGCTCTCCACTCCGGAATTTTCAAGGTTGGTCGTTACTGTGGAAAAAATAGCCGAGGTCCAGCCGTCGTCTCCACCAAAGGCAAAGGATGCTCCGCCGTCATCTCCACCGAAGGCAAAGGATGCTCCGCTATCATCTCCATCAAATGCAGCTAATACAGAGAAACCATCTAAGGCTAAGAGAGAAATGTGCTTAGGAAATGATCCGAGTCCTTTATGCTTAGCTGTATACCTTTATGCCTATTCAGTTTGGACTGTTTGGTCTGGAGTGCCAAAAACTCTTAGAATGAATGTCGATCCAGAGGTAGCTCCTGATTTACCTCATTCTAATTTTAAGGAAACAGATCTTCAGAAAGAAAGTATAATTTGTCCTAATCCCTACAGGCCATTACATGAGGTGGTTAAGGAAAAGTTTAAGAAAAAGAAGTTTAATTCTGCAGTCCATCGTGTTCGTCTTGCTCTTCAAATTGTGAAAAACAAGAAGAATGAGAGCAGACTAATGAGTGATGAGTTTGGGAACGAGGGCATGGCTGGTGATGACTTGGGAGAGGACAAACTTGAGTGTTCAAAATATCCGAGGGGCACAAACATGAAATCAAGAAAGGAATCTGGTAATGACAAAACAACACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran

Protein Analysis

224

Amino Acids

25.02

Weight (kDa)

9.25

Isoelectric Point (pI)

48.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014657)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g14330 FvH4_2g14330
malus_domestica MD10G1017900.v1.1
prunus_persica Prupe.8G022400_v2.0.a1 Prupe.8G022400_v2.0.a1 Prupe.8G022400_v2.0.a1 Prupe.8G022400_v2.0.a1
pyrus_communis pycom10g01170
rosa_chinensis RchiOBHm_Chr6g0276641
rosa_laevigata RLG00000013383
rosa_multiflora Rmu_sc0000441.1_g000045
rosa_roxburghii Rroxscaffold_7G00192140
rosa_rugosa Rorug06G0102500 Rorug06G0102600
rosa_samantha Rh6AG213000 Rh6BG217900
rosa_wichuraiana Rw6G018620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 301
AccI GTMKAC 1 cut(s) 270
AccIII TCCGGA 1 cut(s) 55
AciI CCGC 2 cut(s) 137, 170
AclWI GGATC 2 cut(s) 239, 332
AcsI RAATTY 2 cut(s) 21, 59
AcuI CTGAAG 1 cut(s) 374
AflIII ACRYGT 1 cut(s) 27
AgsI TTSAA 3 cut(s) 66, 506, 609
AluBI AGCT 4 cut(s) 46, 194, 266, 350
AluI AGCT 4 cut(s) 46, 194, 266, 350
Alw26I GTCTC 1 cut(s) 117
AlwI GGATC 2 cut(s) 239, 332
Aor13HI TCCGGA 1 cut(s) 55
AoxI GGCC 1 cut(s) 425
ApeKI GCWGC 1 cut(s) 191
ApoI RAATTY 2 cut(s) 21, 59
AspS9I GGNCC 1 cut(s) 100
AsuHPI GGTGA 1 cut(s) 587
AvaII GGWCC 1 cut(s) 100
BaeGI GKGCMC 1 cut(s) 626
BbvI GCAGC 1 cut(s) 203
BccI CCATC 3 cut(s) 190, 217, 492
BceAI ACGGC 2 cut(s) 91, 124
BcoDI GTCTC 1 cut(s) 117
BfmI CTRYAG 2 cut(s) 421, 477
BglII AGATCT 1 cut(s) 385
BisI GCNGC 1 cut(s) 192
BlpI GCTNAGC 1 cut(s) 262
BlsI GCNGC 1 cut(s) 193
Bme18I GGWCC 1 cut(s) 100
BmgT120I GGNCC 1 cut(s) 100
BmsI GCATC 2 cut(s) 121, 154
BpmI CTGGAG 1 cut(s) 327
Bpu10I CCTNAGC 1 cut(s) 235
Bpu1102I GCTNAGC 1 cut(s) 262
BpuEI CTTGAG 1 cut(s) 620
BsaJI CCNNGG 2 cut(s) 96, 617
BsaWI WCCGGW 1 cut(s) 55
BseAI TCCGGA 1 cut(s) 55
BseDI CCNNGG 2 cut(s) 96, 617
BseGI GGATG 2 cut(s) 136, 169
BseSI GKGCMC 1 cut(s) 626
BseXI GCAGC 1 cut(s) 203
BshFI GGCC 1 cut(s) 427
BsiSI CCGG 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 117
BsmBI CGTCTC 1 cut(s) 117
BsnI GGCC 1 cut(s) 427
Bsp1286I GDGCHC 1 cut(s) 626
Bsp13I TCCGGA 1 cut(s) 55
Bsp143I GATC 3 cut(s) 244, 337, 385
Bsp1720I GCTNAGC 1 cut(s) 262
BspACI CCGC 2 cut(s) 137, 170
BspANI GGCC 1 cut(s) 427
BspEI TCCGGA 1 cut(s) 55
BspMAI CTGCAG 1 cut(s) 481
BspPI GGATC 2 cut(s) 239, 332
BspQI GCTCTTC 1 cut(s) 507
BssECI CCNNGG 2 cut(s) 96, 617
BssMI GATC 3 cut(s) 244, 337, 385
BssNAI GTATAC 1 cut(s) 271
Bst1107I GTATAC 1 cut(s) 271
Bst4CI ACNGT 2 cut(s) 82, 298
Bst6I CTCTTC 1 cut(s) 507
BstAPI GCANNNNNTGC 2 cut(s) 131, 164
BstDEI CTNAG 5 cut(s) 213, 219, 235, 262, 323
BstF5I GGATG 2 cut(s) 136, 169
BstKTI GATC 3 cut(s) 247, 340, 388
BstMAI GTCTC 1 cut(s) 117
BstMBI GATC 3 cut(s) 244, 337, 385
BstMWI GCNNNNNNNGC 2 cut(s) 131, 164
BstSFI CTRYAG 2 cut(s) 421, 477
BstSLI GKGCMC 1 cut(s) 626
BstV1I GCAGC 1 cut(s) 203
BstX2I RGATCY 1 cut(s) 385
BstYI RGATCY 1 cut(s) 385
BstZ17I GTATAC 1 cut(s) 271
BsuRI GGCC 1 cut(s) 427
BtsCI GGATG 2 cut(s) 136, 169
Cfr13I GGNCC 1 cut(s) 100
CviAII CATG 3 cut(s) 434, 568, 631
CviJI RGCY 9 cut(s) 46, 95, 106, 194, 218, 266, 350, 427, 572
CviKI_1 RGCY 9 cut(s) 46, 95, 106, 194, 218, 266, 350, 427, 572
DdeI CTNAG 5 cut(s) 213, 219, 235, 262, 323
DpnI GATC 3 cut(s) 246, 339, 387
DpnII GATC 3 cut(s) 244, 337, 385
DrdI GACNNNNNNGTC 1 cut(s) 301
DseDI GACNNNNNNGTC 1 cut(s) 301
Eam1104I CTCTTC 1 cut(s) 507
EarI CTCTTC 1 cut(s) 507
EciI GGCGGA 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 374
Esp3I CGTCTC 1 cut(s) 117
FaeI CATG 3 cut(s) 437, 571, 634
FaiI YATR 7 cut(s) 259, 271, 279, 404, 435, 569, 632
FatI CATG 3 cut(s) 433, 567, 630
FblI GTMKAC 1 cut(s) 270
Fnu4HI GCNGC 1 cut(s) 192
FokI GGATG 2 cut(s) 143, 176
Fsp4HI GCNGC 1 cut(s) 192
GluI GCNGC 1 cut(s) 192
GsuI CTGGAG 1 cut(s) 327
HaeIII GGCC 1 cut(s) 427
HapII CCGG 1 cut(s) 56
Hin1II CATG 3 cut(s) 437, 571, 634
HinfI GANTC 2 cut(s) 250, 647
HpaII CCGG 1 cut(s) 56
HphI GGTGA 1 cut(s) 587
Hpy166II GTNNAC 2 cut(s) 6, 271
Hpy188I TCNGA 4 cut(s) 20, 249, 393, 618
Hpy188III TCNNGA 5 cut(s) 56, 306, 341, 353, 639
Hpy8I GTNNAC 2 cut(s) 6, 271
Hpy99I CGWCG 1 cut(s) 112
HpyAV CCTTC 1 cut(s) 148
HpyCH4III ACNGT 2 cut(s) 82, 298
HpyCH4IV ACGT 1 cut(s) 29
HpyCH4V TGCA 2 cut(s) 191, 479
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 164
HpyF3I CTNAG 5 cut(s) 213, 219, 235, 262, 323
HpySE526I ACGT 1 cut(s) 29
Hsp92II CATG 3 cut(s) 437, 571, 634
Kpn2I TCCGGA 1 cut(s) 55
Kzo9I GATC 3 cut(s) 244, 337, 385
LguI GCTCTTC 1 cut(s) 507
LmnI GCTCC 3 cut(s) 139, 172, 355
LpnPI CCDG 8 cut(s) 69, 116, 291, 354, 366, 409, 558, 636
Lsp1109I GCAGC 1 cut(s) 203
LweI GCATC 2 cut(s) 121, 154
MaeII ACGT 1 cut(s) 29
MaeIII GTNAC 1 cut(s) 76
MalI GATC 3 cut(s) 246, 339, 387
MboI GATC 3 cut(s) 244, 337, 385
MboII GAAGA 3 cut(s) 380, 494, 535
MflI RGATCY 1 cut(s) 385
MhlI GDGCHC 1 cut(s) 626
MluCI AATT 6 cut(s) 21, 59, 370, 405, 472, 507
MlyI GAGTC 1 cut(s) 259
MnlI CCTC 7 cut(s) 91, 337, 372, 430, 556, 583, 612
MroI TCCGGA 1 cut(s) 55
MseI TTAA 4 cut(s) 375, 444, 456, 471
MslI CAYNNNNRTG 1 cut(s) 629
MspI CCGG 1 cut(s) 56
MwoI GCNNNNNNNGC 2 cut(s) 131, 164
NdeII GATC 3 cut(s) 244, 337, 385
NlaIII CATG 3 cut(s) 437, 571, 634
NmeAIII GCCGAG 1 cut(s) 121
PciSI GCTCTTC 1 cut(s) 507
PfeI GAWTC 1 cut(s) 647
PkrI GCNGC 1 cut(s) 193
PleI GAGTC 1 cut(s) 258
PpsI GAGTC 1 cut(s) 258
PspPI GGNCC 1 cut(s) 100
PstI CTGCAG 1 cut(s) 481
PsuI RGATCY 1 cut(s) 385
RseI CAYNNNNRTG 1 cut(s) 629
SapI GCTCTTC 1 cut(s) 507
SaqAI TTAA 4 cut(s) 375, 444, 456, 471
SatI GCNGC 1 cut(s) 192
Sau3AI GATC 3 cut(s) 244, 337, 385
Sau96I GGNCC 1 cut(s) 100
SchI GAGTC 1 cut(s) 259
SduI GDGCHC 1 cut(s) 626
SfaNI GCATC 2 cut(s) 121, 154
SfcI CTRYAG 2 cut(s) 421, 477
SinI GGWCC 1 cut(s) 100
SmiMI CAYNNNNRTG 1 cut(s) 629
SmlI CTYRAG 1 cut(s) 599
SmoI CTYRAG 1 cut(s) 599
Sse9I AATT 6 cut(s) 21, 59, 370, 405, 472, 507
SsiI CCGC 2 cut(s) 137, 170
TaaI ACNGT 2 cut(s) 82, 298
TaiI ACGT 1 cut(s) 32
TaqI TCGA 1 cut(s) 336
TasI AATT 6 cut(s) 21, 59, 370, 405, 472, 507
TfiI GAWTC 1 cut(s) 647
Tru1I TTAA 4 cut(s) 375, 444, 456, 471
Tru9I TTAA 4 cut(s) 375, 444, 456, 471
TseI GCWGC 1 cut(s) 191
TspDTI ATGAA 2 cut(s) 344, 647
VpaK11BI GGWCC 1 cut(s) 100
XapI RAATTY 2 cut(s) 21, 59
XmiI GTMKAC 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.