Rorug06G0186600

Phospholipid--sterol

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
29573455 .. 29574081
627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0186600.1

Sequence Viewer

Length: 228 bp
ATGTATCTAAGCTCTGCACTTGAGAAGATGAGTGATGCTCTCCGCAATAGTAGACATTTAAGTTATATACTGTTCCAATTACCTTTGACAGGGGAGGGCTCTGATTCTAACGGTTTACCGAACGAGACCAAACTAGTTGGGGATCCACAGGTGTGTGACAAAGAAGTAATAGAAAGGCAACCTGTAGTAGGAAGTGAGCAGAGAAAAAATCTTAAAGATCTCAGGTGA

Protein Analysis

75

Amino Acids

8.42

Weight (kDa)

5.73

Isoelectric Point (pI)

61.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 52
AciI CCGC 1 cut(s) 43
AclWI GGATC 2 cut(s) 137, 150
AfiI CCNNNNNNNGG 2 cut(s) 89, 188
AhlI ACTAGT 1 cut(s) 133
AleI CACNNNNGTG 1 cut(s) 151
AluBI AGCT 1 cut(s) 12
AluI AGCT 1 cut(s) 12
Alw26I GTCTC 1 cut(s) 119
AlwI GGATC 2 cut(s) 137, 150
BamHI GGATCC 1 cut(s) 142
BanII GRGCYC 1 cut(s) 101
BcoDI GTCTC 1 cut(s) 119
BcuI ACTAGT 1 cut(s) 133
BfaI CTAG 1 cut(s) 134
BfmI CTRYAG 1 cut(s) 183
BglII AGATCT 1 cut(s) 217
BmiI GGNNCC 1 cut(s) 144
BmsI GCATC 1 cut(s) 25
BplI GAGNNNNNCTC 2 cut(s) 22, 54
BpuEI CTTGAG 1 cut(s) 41
BsaI GGTCTC 1 cut(s) 119
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 188
BseLI CCNNNNNNNGG 2 cut(s) 89, 188
BslI CCNNNNNNNGG 2 cut(s) 89, 188
BsmAI GTCTC 1 cut(s) 119
Bso31I GGTCTC 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 101
Bsp143I GATC 2 cut(s) 142, 217
BspACI CCGC 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 144
BspPI GGATC 2 cut(s) 137, 150
BspTNI GGTCTC 1 cut(s) 119
BssMI GATC 2 cut(s) 142, 217
Bst4CI ACNGT 2 cut(s) 72, 113
BstDEI CTNAG 2 cut(s) 8, 221
BstENI CCTNNNNNAGG 2 cut(s) 87, 186
BstKTI GATC 2 cut(s) 145, 220
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 2 cut(s) 142, 217
BstSFI CTRYAG 1 cut(s) 183
BstX2I RGATCY 2 cut(s) 142, 217
BstYI RGATCY 2 cut(s) 142, 217
CviJI RGCY 2 cut(s) 12, 99
CviKI_1 RGCY 2 cut(s) 12, 99
DdeI CTNAG 2 cut(s) 8, 221
DpnI GATC 2 cut(s) 144, 219
DpnII GATC 2 cut(s) 142, 217
Eco24I GRGCYC 1 cut(s) 101
Eco31I GGTCTC 1 cut(s) 119
EcoNI CCTNNNNNAGG 2 cut(s) 87, 186
EcoT38I GRGCYC 1 cut(s) 101
FaiI YATR 2 cut(s) 66, 68
FblI GTMKAC 1 cut(s) 52
FriOI GRGCYC 1 cut(s) 101
FspBI CTAG 1 cut(s) 134
HinfI GANTC 1 cut(s) 104
Hpy166II GTNNAC 2 cut(s) 53, 116
Hpy188I TCNGA 1 cut(s) 103
Hpy8I GTNNAC 2 cut(s) 53, 116
HpyCH4III ACNGT 2 cut(s) 72, 113
HpyCH4V TGCA 1 cut(s) 17
HpyF3I CTNAG 2 cut(s) 8, 221
Kzo9I GATC 2 cut(s) 142, 217
LpnPI CCDG 4 cut(s) 75, 134, 195, 208
LweI GCATC 1 cut(s) 25
MaeI CTAG 1 cut(s) 134
MaeIII GTNAC 1 cut(s) 155
MalI GATC 2 cut(s) 144, 219
MboI GATC 2 cut(s) 142, 217
MboII GAAGA 1 cut(s) 37
MflI RGATCY 2 cut(s) 142, 217
MhlI GDGCHC 1 cut(s) 101
MluCI AATT 1 cut(s) 77
MnlI CCTC 1 cut(s) 88
MseI TTAA 2 cut(s) 59, 213
MslI CAYNNNNRTG 1 cut(s) 151
NdeII GATC 2 cut(s) 142, 217
NlaIV GGNNCC 1 cut(s) 144
NmuCI GTSAC 1 cut(s) 155
OliI CACNNNNGTG 1 cut(s) 151
PfeI GAWTC 1 cut(s) 104
PspN4I GGNNCC 1 cut(s) 144
PsuI RGATCY 2 cut(s) 142, 217
RseI CAYNNNNRTG 1 cut(s) 151
SaqAI TTAA 2 cut(s) 59, 213
Sau3AI GATC 2 cut(s) 142, 217
SduI GDGCHC 1 cut(s) 101
SetI ASST 5 cut(s) 14, 85, 153, 184, 227
SfaNI GCATC 1 cut(s) 25
SfcI CTRYAG 1 cut(s) 183
SgeI CNNG 6 cut(s) 32, 102, 136, 146, 161, 194
SmiMI CAYNNNNRTG 1 cut(s) 151
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
SpeI ACTAGT 1 cut(s) 133
Sse9I AATT 1 cut(s) 77
SsiI CCGC 1 cut(s) 43
SspMI CTAG 1 cut(s) 134
TaaI ACNGT 2 cut(s) 72, 113
TasI AATT 1 cut(s) 77
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 2 cut(s) 59, 213
Tru9I TTAA 2 cut(s) 59, 213
TseFI GTSAC 1 cut(s) 155
Tsp45I GTSAC 1 cut(s) 155
XagI CCTNNNNNAGG 2 cut(s) 87, 186
XmiI GTMKAC 1 cut(s) 52
XspI CTAG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.