Rorug06G0431100

beta-1,3-galactosyltransferase 19

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
56640980 .. 56642558
1579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0431100.1

Sequence Viewer

Length: 1080 bp
ATGTCGATCTTTCGTTGTCCTCTACAAATCATTCTCATTGTTTCGCTCATTAGTTTTCAAACCAGCGTTAATTCGACAACTTTTACATTCACAAACAGGTGCGATTACACTGTTTATCCAGGAACTCTAGCCGGTTCATCCAGCCCTAGACTAGAAAGCACCGGATTCCAGCTCCAACCCGGCGAGTCTCGCTCCCTTCAAGCCCCACCAAGCTGGTCCGGCAGGTTCTGGGGTCGAACCGGTTGCAACTTCGACCCCGTCACCGGCCAGGGCTCCTGCACCACCGCCGACTGCGGCTCCAACCAACTCGAGTGCAACGGCGCCGGTGCAGTCCCTCCCGCCACTCTCGCCGAGTTCACAATCGGCTCGGGTGATGCAAAGGACTTCTACGACGTCAGCCTGGTCGATGGCTTCAACTTGCCTATGCTGGTCGAAACGAGCGGCGGCTCCGGTGACTGTTCTTCAACCGGGTGCGCGGTGAACTTGAATAAGGGATGTCCGAGTGAGCTGCAGTTCGAAGGCGGGGCGGGGTGTAGAAGCGCGTGCGAGGCTTTTCAGACGCCGGAGTACTGCTGCAGCGGCGCGTATGGCTCACCGTCGACATGTAAGCCGTCGGTTTACTCGCAGATGTTTAAGGCGGCGTGTCCGACGGCGTATAGCTATGCGTACGATGATGGCACGAGTACGTTCACGTGTAGTGGAGCTGATTACATCATAACATTCTGCCCCTCATCTACAACAAGTCTTAAATCTTCAACACCAACAACTTCAACACTTCCAACATCACCAACAACGACACCGCCCACGCCAACAACGACGGTAACACCGCCGATGCCGACACAAACAGCACCATCAGTATCACCTCCAACAATGACACCGCCAAGGCCAACGACGACGGTAACACCGCCACCGCCAACAGGGACAACGGCGACACCAACGAGGGCAACAGATGGGACCGGAGGTGGATATGTCATGGATTATTTTGGTTCATCGCCGAGTTTTAGTGGTGACGCATCCAAGACACTTGCTTCTACTGCCATGGCTGCTTCTTCTGTTTTGTTTTATTTTCTATTGGTTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

359

Amino Acids

37.13

Weight (kDa)

4.5

Isoelectric Point (pI)

50.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 32 - 243 3.4e-82 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013931)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74800 AT5G62620 AT5G62620
fragaria_vesca FvH4_5g15890 FvH4_5g15890
malus_domestica MD06G1184800.v1.1 MD14G1190700.v1.1
prunus_persica Prupe.5G183600_v2.0.a1
pyrus_communis pycom06g16400 pycom14g15840
rosa_chinensis RchiOBHm_Chr7g0180161
rosa_laevigata RLG00000005286
rosa_multiflora Rmu_ssc0000119.1_g000039
rosa_roxburghii Rroxscaffold_3G00273070
rosa_rugosa Rorug06G0431100
rosa_samantha Rh7AG031600
rosa_wichuraiana Rw7G002630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 396
Acc36I ACCTGC 1 cut(s) 213
AccB1I GGYRCC 1 cut(s) 320
AccBSI CCGCTC 1 cut(s) 441
AccI GTMKAC 1 cut(s) 599
AccII CGCG 3 cut(s) 476, 542, 584
AcoI YGGCCR 1 cut(s) 265
AcvI CACGTG 1 cut(s) 693
AcyI GRCGYC 3 cut(s) 321, 393, 560
AfaI GTAC 3 cut(s) 569, 668, 685
AfiI CCNNNNNNNGG 2 cut(s) 263, 917
AflIII ACRYGT 2 cut(s) 602, 692
AgeI ACCGGT 1 cut(s) 239
AgsI TTSAA 7 cut(s) 59, 200, 415, 465, 487, 756, 771
AjnI CCWGG 3 cut(s) 118, 267, 399
AluBI AGCT 5 cut(s) 172, 213, 508, 660, 704
AluI AGCT 5 cut(s) 172, 213, 508, 660, 704
Alw26I GTCTC 1 cut(s) 192
AlwNI CAGNNNCTG 1 cut(s) 228
Ama87I CYCGRG 2 cut(s) 308, 367
AoxI GGCC 2 cut(s) 265, 884
ApeKI GCWGC 4 cut(s) 508, 573, 576, 1043
AsiGI ACCGGT 1 cut(s) 239
AspLEI GCGC 4 cut(s) 323, 476, 542, 584
AspS9I GGNCC 2 cut(s) 216, 954
AsuC2I CCSGG 2 cut(s) 180, 469
AsuHPI GGTGA 8 cut(s) 253, 383, 464, 490, 585, 777, 852, 1019
AsuII TTCGAA 1 cut(s) 516
AvaI CYCGRG 2 cut(s) 308, 367
AvaII GGWCC 2 cut(s) 216, 954
BanI GGYRCC 1 cut(s) 320
BanII GRGCYC 1 cut(s) 275
BauI CACGAG 1 cut(s) 679
BbrPI CACGTG 1 cut(s) 693
BbvI GCAGC 4 cut(s) 495, 560, 588, 1030
BccI CCATC 4 cut(s) 401, 668, 859, 944
BceAI ACGGC 4 cut(s) 334, 595, 666, 942
BcgI CGANNNNNNTGC 4 cut(s) 225, 259, 490, 524
BciT130I CCWGG 3 cut(s) 120, 269, 401
BcnI CCSGG 2 cut(s) 180, 469
BcoDI GTCTC 1 cut(s) 192
BfaI CTAG 3 cut(s) 128, 147, 152
BfmI CTRYAG 2 cut(s) 509, 574
BfoI RGCGCY 1 cut(s) 324
BfuAI ACCTGC 1 cut(s) 213
BisI GCNGC 9 cut(s) 295, 442, 445, 509, 574, 577, 580, 639, 1044
BlsI GCNGC 9 cut(s) 296, 443, 446, 510, 575, 578, 581, 640, 1045
BmcAI AGTACT 1 cut(s) 569
Bme1390I CCNGG 5 cut(s) 120, 180, 269, 401, 469
Bme18I GGWCC 2 cut(s) 216, 954
BmeT110I CYCGRG 2 cut(s) 308, 367
BmgT120I GGNCC 2 cut(s) 216, 954
BmiI GGNNCC 5 cut(s) 274, 298, 322, 448, 955
BmrFI CCNGG 5 cut(s) 120, 180, 269, 401, 469
BmsI GCATC 3 cut(s) 364, 822, 1022
BplI GAGNNNNNCTC 2 cut(s) 176, 208
Bpu14I TTCGAA 1 cut(s) 516
BpuMI CCSGG 2 cut(s) 180, 469
BsaAI YACGTR 1 cut(s) 693
BsaHI GRCGYC 3 cut(s) 321, 393, 560
BsaJI CCNNGG 3 cut(s) 268, 881, 1038
BsaWI WCCGGW 4 cut(s) 161, 239, 449, 956
BsaXI ACNNNNNCTCC 2 cut(s) 281, 311
Bsc4I CCNNNNNNNGG 2 cut(s) 263, 917
Bse118I RCCGGY 4 cut(s) 131, 239, 263, 323
BseBI CCWGG 3 cut(s) 120, 269, 401
BseDI CCNNGG 3 cut(s) 268, 881, 1038
BseGI GGATG 3 cut(s) 137, 500, 1013
BseLI CCNNNNNNNGG 2 cut(s) 263, 917
BseXI GCAGC 4 cut(s) 495, 560, 588, 1030
BsgI GTGCAG 2 cut(s) 262, 348
Bsh1236I CGCG 3 cut(s) 476, 542, 584
BshFI GGCC 2 cut(s) 267, 886
BshNI GGYRCC 1 cut(s) 320
BshTI ACCGGT 1 cut(s) 239
BsiHKCI CYCGRG 2 cut(s) 308, 367
BsiWI CGTACG 1 cut(s) 666
BslFI GGGAC 3 cut(s) 317, 934, 967
BslI CCNNNNNNNGG 2 cut(s) 263, 917
BsmAI GTCTC 1 cut(s) 192
BsmFI GGGAC 3 cut(s) 317, 934, 967
BsnI GGCC 2 cut(s) 267, 886
BsoBI CYCGRG 2 cut(s) 308, 367
Bsp119I TTCGAA 1 cut(s) 516
Bsp1286I GDGCHC 1 cut(s) 275
Bsp143I GATC 1 cut(s) 6
Bsp19I CCATGG 1 cut(s) 1038
BspANI GGCC 2 cut(s) 267, 886
BspFNI CGCG 3 cut(s) 476, 542, 584
BspLI GGNNCC 5 cut(s) 274, 298, 322, 448, 955
BspMAI CTGCAG 2 cut(s) 513, 578
BspMI ACCTGC 1 cut(s) 213
BspT104I TTCGAA 1 cut(s) 516
BspT107I GGYRCC 1 cut(s) 320
BsrBI CCGCTC 1 cut(s) 441
BsrFI RCCGGY 4 cut(s) 131, 239, 263, 323
BssAI RCCGGY 4 cut(s) 131, 239, 263, 323
BssECI CCNNGG 3 cut(s) 268, 881, 1038
BssMI GATC 1 cut(s) 6
BssNI GRCGYC 3 cut(s) 321, 393, 560
BssSI CACGAG 1 cut(s) 679
BssT1I CCWWGG 2 cut(s) 881, 1038
Bst2BI CACGAG 1 cut(s) 679
Bst2UI CCWGG 3 cut(s) 120, 269, 401
Bst4CI ACNGT 5 cut(s) 112, 458, 597, 820, 898
BstACI GRCGYC 3 cut(s) 321, 393, 560
BstBAI YACGTR 1 cut(s) 693
BstBI TTCGAA 1 cut(s) 516
BstC8I GCNNGC 1 cut(s) 544
BstDSI CCRYGG 1 cut(s) 1038
BstF5I GGATG 3 cut(s) 137, 500, 1013
BstFNI CGCG 3 cut(s) 476, 542, 584
BstH2I RGCGCY 1 cut(s) 324
BstHHI GCGC 4 cut(s) 323, 476, 542, 584
BstKTI GATC 1 cut(s) 9
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 1 cut(s) 6
BstMWI GCNNNNNNNGC 8 cut(s) 189, 219, 347, 548, 579, 588, 1034, 1043
BstNI CCWGG 3 cut(s) 120, 269, 401
BstNSI RCATGY 1 cut(s) 606
BstSCI CCNGG 5 cut(s) 118, 178, 267, 399, 467
BstSFI CTRYAG 2 cut(s) 509, 574
BstUI CGCG 3 cut(s) 476, 542, 584
BstV1I GCAGC 4 cut(s) 495, 560, 588, 1030
BstXI CCANNNNNNTGG 1 cut(s) 213
BsuRI GGCC 2 cut(s) 267, 886
BtgI CCRYGG 1 cut(s) 1038
BtgZI GCGATG 1 cut(s) 975
BtsCI GGATG 3 cut(s) 137, 500, 1013
BtsIMutI CAGTG 1 cut(s) 108
BveI ACCTGC 1 cut(s) 213
Cac8I GCNNGC 1 cut(s) 544
CaiI CAGNNNCTG 1 cut(s) 228
CfoI GCGC 4 cut(s) 323, 476, 542, 584
Cfr10I RCCGGY 4 cut(s) 131, 239, 263, 323
Cfr13I GGNCC 2 cut(s) 216, 954
CseI GACGC 2 cut(s) 568, 1019
Csp6I GTAC 3 cut(s) 568, 667, 684
CspAI ACCGGT 1 cut(s) 239
CviAII CATG 3 cut(s) 603, 973, 1039
CviQI GTAC 3 cut(s) 568, 667, 684
DinI GGCGCC 1 cut(s) 322
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
EaeI YGGCCR 1 cut(s) 265
Eco130I CCWWGG 2 cut(s) 881, 1038
Eco24I GRGCYC 1 cut(s) 275
Eco47I GGWCC 2 cut(s) 216, 954
Eco72I CACGTG 1 cut(s) 693
Eco88I CYCGRG 2 cut(s) 308, 367
EcoRII CCWGG 3 cut(s) 118, 267, 399
EcoT14I CCWWGG 2 cut(s) 881, 1038
EcoT38I GRGCYC 1 cut(s) 275
EgeI GGCGCC 1 cut(s) 322
EheI GGCGCC 1 cut(s) 322
ErhI CCWWGG 2 cut(s) 881, 1038
FaeI CATG 3 cut(s) 606, 976, 1042
FaiI YATR 9 cut(s) 425, 588, 604, 657, 663, 716, 969, 974, 1040
FaqI GGGAC 3 cut(s) 317, 934, 967
FatI CATG 3 cut(s) 602, 972, 1038
FauI CCCGC 3 cut(s) 346, 515, 520
FblI GTMKAC 1 cut(s) 599
Fnu4HI GCNGC 9 cut(s) 295, 442, 445, 509, 574, 577, 580, 639, 1044
FokI GGATG 3 cut(s) 124, 507, 1000
FriOI GRGCYC 1 cut(s) 275
Fsp4HI GCNGC 9 cut(s) 295, 442, 445, 509, 574, 577, 580, 639, 1044
FspBI CTAG 3 cut(s) 128, 147, 152
GlaI GCGC 4 cut(s) 322, 475, 541, 583
GluI GCNGC 9 cut(s) 295, 442, 445, 509, 574, 577, 580, 639, 1044
HaeII RGCGCY 1 cut(s) 324
HaeIII GGCC 2 cut(s) 267, 886
HgaI GACGC 2 cut(s) 568, 1019
HhaI GCGC 4 cut(s) 323, 476, 542, 584
Hin1I GRCGYC 3 cut(s) 321, 393, 560
Hin1II CATG 3 cut(s) 606, 976, 1042
Hin6I GCGC 4 cut(s) 321, 474, 540, 582
HinP1I GCGC 4 cut(s) 321, 474, 540, 582
HincII GTYRAC 1 cut(s) 600
HindII GTYRAC 1 cut(s) 600
HinfI GANTC 2 cut(s) 165, 185
HphI GGTGA 8 cut(s) 253, 383, 464, 490, 585, 777, 852, 1019
Hpy166II GTNNAC 5 cut(s) 357, 481, 600, 619, 690
Hpy188I TCNGA 3 cut(s) 501, 558, 648
Hpy8I GTNNAC 5 cut(s) 357, 481, 600, 619, 690
Hpy99I CGWCG 7 cut(s) 395, 601, 616, 652, 820, 895, 898
HpyAV CCTTC 2 cut(s) 206, 512
HpyCH4III ACNGT 5 cut(s) 112, 458, 597, 820, 898
HpyCH4IV ACGT 3 cut(s) 393, 686, 692
HpyCH4V TGCA 7 cut(s) 246, 279, 315, 329, 377, 511, 576
HpyF10VI GCNNNNNNNGC 8 cut(s) 189, 219, 347, 548, 579, 588, 1034, 1043
HpySE526I ACGT 3 cut(s) 393, 686, 692
Hsp92I GRCGYC 3 cut(s) 321, 393, 560
Hsp92II CATG 3 cut(s) 606, 976, 1042
HspAI GCGC 4 cut(s) 321, 474, 540, 582
KasI GGCGCC 1 cut(s) 320
Kzo9I GATC 1 cut(s) 6
LmnI GCTCC 6 cut(s) 177, 197, 278, 302, 452, 701
Lsp1109I GCAGC 4 cut(s) 495, 560, 588, 1030
LweI GCATC 3 cut(s) 364, 822, 1022
MaeI CTAG 3 cut(s) 128, 147, 152
MaeII ACGT 3 cut(s) 393, 686, 692
MaeIII GTNAC 5 cut(s) 259, 452, 820, 898, 1007
MalI GATC 1 cut(s) 8
MbiI CCGCTC 1 cut(s) 441
MboI GATC 1 cut(s) 6
MboII GAAGA 3 cut(s) 453, 744, 1041
MhlI GDGCHC 1 cut(s) 275
MluCI AATT 1 cut(s) 70
Mly113I GGCGCC 1 cut(s) 321
MlyI GAGTC 1 cut(s) 194
MmeI TCCRAC 5 cut(s) 199, 324, 671, 803, 890
MnlI CCTC 7 cut(s) 30, 345, 541, 739, 873, 933, 953
MseI TTAA 3 cut(s) 69, 633, 747
MspA1I CMGCKG 1 cut(s) 579
MspR9I CCNGG 5 cut(s) 120, 180, 269, 401, 469
MvaI CCWGG 3 cut(s) 120, 269, 401
MvnI CGCG 3 cut(s) 476, 542, 584
MwoI GCNNNNNNNGC 8 cut(s) 189, 219, 347, 548, 579, 588, 1034, 1043
NarI GGCGCC 1 cut(s) 321
NciI CCSGG 2 cut(s) 180, 469
NcoI CCATGG 1 cut(s) 1038
NdeII GATC 1 cut(s) 6
NlaIII CATG 3 cut(s) 606, 976, 1042
NlaIV GGNNCC 5 cut(s) 274, 298, 322, 448, 955
NmeAIII GCCGAG 2 cut(s) 376, 1020
NmuCI GTSAC 3 cut(s) 259, 452, 1007
NspI RCATGY 1 cut(s) 606
NspV TTCGAA 1 cut(s) 516
PaeR7I CTCGAG 1 cut(s) 308
PciI ACATGT 1 cut(s) 602
PcsI WCGNNNNNNNCGW 1 cut(s) 812
PfeI GAWTC 1 cut(s) 165
Pfl23II CGTACG 1 cut(s) 666
PflFI GACNNNGTC 1 cut(s) 257
PfoI TCCNGGA 1 cut(s) 118
PinAI ACCGGT 1 cut(s) 239
PkrI GCNGC 9 cut(s) 296, 443, 446, 510, 575, 578, 581, 640, 1045
PleI GAGTC 1 cut(s) 193
PluTI GGCGCC 1 cut(s) 324
PmaCI CACGTG 1 cut(s) 693
PmlI CACGTG 1 cut(s) 693
PpsI GAGTC 1 cut(s) 193
Ppu21I YACGTR 1 cut(s) 693
PscI ACATGT 1 cut(s) 602
Psp6I CCWGG 3 cut(s) 118, 267, 399
PspCI CACGTG 1 cut(s) 693
PspGI CCWGG 3 cut(s) 118, 267, 399
PspLI CGTACG 1 cut(s) 666
PspN4I GGNNCC 5 cut(s) 274, 298, 322, 448, 955
PspPI GGNCC 2 cut(s) 216, 954
PspXI VCTCGAGB 1 cut(s) 308
PstI CTGCAG 2 cut(s) 513, 578
PstNI CAGNNNCTG 1 cut(s) 228
PsyI GACNNNGTC 1 cut(s) 257
RsaI GTAC 3 cut(s) 569, 668, 685
RsaNI GTAC 3 cut(s) 568, 667, 684
SalI GTCGAC 1 cut(s) 598
SaqAI TTAA 3 cut(s) 69, 633, 747
SatI GCNGC 9 cut(s) 295, 442, 445, 509, 574, 577, 580, 639, 1044
Sau3AI GATC 1 cut(s) 6
Sau96I GGNCC 2 cut(s) 216, 954
ScaI AGTACT 1 cut(s) 569
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 5 cut(s) 120, 180, 269, 401, 469
SduI GDGCHC 1 cut(s) 275
SfaNI GCATC 3 cut(s) 364, 822, 1022
SfcI CTRYAG 2 cut(s) 509, 574
SfoI GGCGCC 1 cut(s) 322
Sfr274I CTCGAG 1 cut(s) 308
SfuI TTCGAA 1 cut(s) 516
SgrAI CRCCGGYG 1 cut(s) 323
SinI GGWCC 2 cut(s) 216, 954
SlaI CTCGAG 1 cut(s) 308
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
Sse9I AATT 1 cut(s) 70
SspDI GGCGCC 1 cut(s) 320
SspMI CTAG 3 cut(s) 128, 147, 152
StyD4I CCNGG 5 cut(s) 118, 178, 267, 399, 467
StyI CCWWGG 2 cut(s) 881, 1038
TaaI ACNGT 5 cut(s) 112, 458, 597, 820, 898
TaiI ACGT 3 cut(s) 396, 689, 695
TaqI TCGA 9 cut(s) 5, 74, 235, 252, 309, 405, 432, 516, 599
TasI AATT 1 cut(s) 70
TatI WGTACW 1 cut(s) 567
TauI GCSGC 5 cut(s) 297, 444, 447, 582, 641
TfiI GAWTC 1 cut(s) 165
Tru1I TTAA 3 cut(s) 69, 633, 747
Tru9I TTAA 3 cut(s) 69, 633, 747
TscAI CASTG 1 cut(s) 115
TseFI GTSAC 3 cut(s) 259, 452, 1007
TseI GCWGC 4 cut(s) 508, 573, 576, 1043
Tsp45I GTSAC 3 cut(s) 259, 452, 1007
TspDTI ATGAA 2 cut(s) 126, 978
TspRI CASTG 1 cut(s) 115
Tth111I GACNNNGTC 1 cut(s) 257
VpaK11BI GGWCC 2 cut(s) 216, 954
XceI RCATGY 1 cut(s) 606
XhoI CTCGAG 1 cut(s) 308
XmiI GTMKAC 1 cut(s) 599
XspI CTAG 3 cut(s) 128, 147, 152
ZraI GACGTC 1 cut(s) 394
ZrmI AGTACT 1 cut(s) 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.