Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008246

Physical Location & Seq

Genomic Coordinates Forward (+)

59919886 .. 59921137

Gene Structure 1252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0477400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCCAACAGTTCCAAGCTTCTCTTCTCCTTGTTTGTTCTTGTTCTTGTAATTACCTCTAGTTGGGTTCTGATGGTATCAGAAGCACGTCCTCTGAGAATTGGTAGTGGTTTGTTTGTTATTGATGGGTTGTACATTGAAGCAATGAAGGCTGGTGGAGGTCCAAGTCCTGGTGGAAAAGGTCATGCCTTCAGCAGTTCTCAAATTCTTGGAGGAATCAAAAATGGAGGTCCAAGCTCAGGAGGGAAAGGTCATGGCTTCACAGATTCTCAAATTCTTGGAGGTATCAAAAATGAAGGTCCAAGCTCAAGTGGAAAGGGTCATGCCTTCACTACTTCTCAGACTGTTGGAGGGATCAAAAATGGAGGAGGTCCAAGTCCAGGTGGAAAAGGTCATGGCTTCACTGATTCTCAAACTCTTGGAGGGATCAAAAATGGAGGTCCAAGCTCTGGTGGAAAGGGTCATGCTTTCACCAATTCTCCTACTCTTGGAGGGATTAAAAATGGAGGTCCAAGTCCAGGTGGGAAAGGTCATGCCTTCACTAGTTCGTATCCTACTCTAGGACTTGGAGGGATCAAAGATTCTGGTCCAAGCCATGGAGGCAGTGGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0010035 GO:0010038 GO:0010039 GO:0010154 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0042221 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

204

Amino Acids

19.77

Weight (kDa)

10.0

Isoelectric Point (pI)

43.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24120
fragaria_vesca	FvH4_5g10970 FvH4_5g10970 FvH4_5g10970 FvH4_5g10970
malus_domestica	MD06G1118000.v1.1 MD14G1125900.v1.1
prunus_persica	Prupe.5G129100_v2.0.a1 Prupe.5G129100_v2.0.a1 Prupe.5G129100_v2.0.a1 Prupe.5G129100_v2.0.a1
pyrus_communis	pycom14g11070 pycom14g11080
rosa_chinensis	RchiOBHm_Chr7g0186851
rosa_laevigata	RLG00000004810
rosa_multiflora	Rmu_ssc0000024.1_g000033
rosa_roxburghii	Rroxscaffold_3G00267770
rosa_rugosa	Rorug06G0477400 Rorug06G0477400
rosa_samantha	Rh7BG079600 Rh7CG084200 Rh7DG085100
rosa_wichuraiana	Rw7G007320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	170, 449, 596
AclWI	GGATC	3 cut(s)	362, 434, 581
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	204, 273
AcuI	CTGAAG	1 cut(s)	175
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	9 cut(s)	63, 170, 239, 380, 449, 488, 518, 560, 596
AgsI	TTSAA	1 cut(s)	140
AhlI	ACTAGT	1 cut(s)	542
AjiI	CACGTC	1 cut(s)	89
AjnI	CCWGG	3 cut(s)	169, 379, 517
AjuI	GAANNNNNNNTTGG	2 cut(s)	8, 40
AluBI	AGCT	4 cut(s)	19, 237, 306, 447
AluI	AGCT	4 cut(s)	19, 237, 306, 447
AlwI	GGATC	3 cut(s)	362, 434, 581
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	2 cut(s)	204, 273
AspS9I	GGNCC	7 cut(s)	161, 230, 299, 371, 440, 509, 587
AsuHPI	GGTGA	1 cut(s)	463
AvaII	GGWCC	7 cut(s)	161, 230, 299, 371, 440, 509, 587
BalI	TGGCCA	1 cut(s)	5
BccI	CCATC	2 cut(s)	67, 119
BciT130I	CCWGG	3 cut(s)	171, 381, 519
BciVI	GTATCC	1 cut(s)	561
BcuI	ACTAGT	1 cut(s)	542
BfaI	CTAG	3 cut(s)	60, 543, 560
BfuI	GTATCC	1 cut(s)	561
BglI	GCCNNNNNGGC	1 cut(s)	600
Bme1390I	CCNGG	3 cut(s)	171, 381, 519
Bme18I	GGWCC	7 cut(s)	161, 230, 299, 371, 440, 509, 587
BmgBI	CACGTC	1 cut(s)	89
BmgT120I	GGNCC	7 cut(s)	161, 230, 299, 371, 440, 509, 587
BmrFI	CCNGG	3 cut(s)	171, 381, 519
Bpu10I	CCTNAGC	1 cut(s)	238
BpuEI	CTTGAG	1 cut(s)	292
BsaJI	CCNNGG	1 cut(s)	595
BsaXI	ACNNNNNCTCC	2 cut(s)	463, 493
Bsc4I	CCNNNNNNNGG	9 cut(s)	63, 170, 239, 380, 449, 488, 518, 560, 596
Bse3DI	GCAATG	1 cut(s)	150
BseBI	CCWGG	3 cut(s)	171, 381, 519
BseDI	CCNNGG	1 cut(s)	595
BseLI	CCNNNNNNNGG	9 cut(s)	63, 170, 239, 380, 449, 488, 518, 560, 596
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	3 cut(s)	86, 252, 353
BseRI	GAGGAG	1 cut(s)	381
BshFI	GGCC	1 cut(s)	5
BslI	CCNNNNNNNGG	9 cut(s)	63, 170, 239, 380, 449, 488, 518, 560, 596
BsnI	GGCC	1 cut(s)	5
Bsp1407I	TGTACA	1 cut(s)	132
Bsp143I	GATC	3 cut(s)	354, 426, 573
Bsp19I	CCATGG	1 cut(s)	595
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	87, 251, 352
BspPI	GGATC	3 cut(s)	362, 434, 581
BsrDI	GCAATG	1 cut(s)	150
BsrGI	TGTACA	1 cut(s)	132
BssECI	CCNNGG	1 cut(s)	595
BssMI	GATC	3 cut(s)	354, 426, 573
BssT1I	CCWWGG	1 cut(s)	595
Bst2UI	CCWGG	3 cut(s)	171, 381, 519
Bst4CI	ACNGT	2 cut(s)	11, 346
Bst6I	CTCTTC	1 cut(s)	29
BstAUI	TGTACA	1 cut(s)	132
BstDEI	CTNAG	3 cut(s)	95, 238, 339
BstDSI	CCRYGG	1 cut(s)	595
BstENI	CCTNNNNNAGG	1 cut(s)	558
BstKTI	GATC	3 cut(s)	357, 429, 576
BstMBI	GATC	3 cut(s)	354, 426, 573
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 600
BstNI	CCWGG	3 cut(s)	171, 381, 519
BstSCI	CCNGG	3 cut(s)	169, 379, 517
BsuI	GTATCC	1 cut(s)	561
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	595
BtrI	CACGTC	1 cut(s)	89
BtsI	GCAGTG	1 cut(s)	610
BtsIMutI	CAGTG	2 cut(s)	402, 610
Cfr13I	GGNCC	7 cut(s)	161, 230, 299, 371, 440, 509, 587
Csp6I	GTAC	1 cut(s)	133
CviAII	CATG	7 cut(s)	185, 254, 323, 395, 464, 533, 596
CviJI	RGCY	9 cut(s)	5, 19, 152, 237, 258, 306, 399, 447, 594
CviKI_1	RGCY	9 cut(s)	5, 19, 152, 237, 258, 306, 399, 447, 594
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	3 cut(s)	95, 238, 339
DpnI	GATC	3 cut(s)	356, 428, 575
DpnII	GATC	3 cut(s)	354, 426, 573
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	595
Eco47I	GGWCC	7 cut(s)	161, 230, 299, 371, 440, 509, 587
Eco57I	CTGAAG	1 cut(s)	175
EcoNI	CCTNNNNNAGG	1 cut(s)	558
EcoRII	CCWGG	3 cut(s)	169, 379, 517
EcoT14I	CCWWGG	1 cut(s)	595
ErhI	CCWWGG	1 cut(s)	595
FaeI	CATG	7 cut(s)	188, 257, 326, 398, 467, 536, 599
FaiI	YATR	7 cut(s)	186, 255, 324, 396, 465, 534, 597
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FatI	CATG	7 cut(s)	184, 253, 322, 394, 463, 532, 595
FspBI	CTAG	3 cut(s)	60, 543, 560
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	7 cut(s)	188, 257, 326, 398, 467, 536, 599
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	4 cut(s)	216, 266, 407, 581
HphI	GGTGA	1 cut(s)	463
Hpy188I	TCNGA	4 cut(s)	72, 82, 96, 342
Hpy188III	TCNNGA	1 cut(s)	240
HpyAV	CCTTC	5 cut(s)	142, 199, 290, 337, 547
HpyCH4III	ACNGT	2 cut(s)	11, 346
HpyCH4IV	ACGT	1 cut(s)	88
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 600
HpyF3I	CTNAG	3 cut(s)	95, 238, 339
HpySE526I	ACGT	1 cut(s)	88
Hsp92II	CATG	7 cut(s)	188, 257, 326, 398, 467, 536, 599
Kzo9I	GATC	3 cut(s)	354, 426, 573
MaeI	CTAG	3 cut(s)	60, 543, 560
MaeII	ACGT	1 cut(s)	88
MalI	GATC	3 cut(s)	356, 428, 575
MboI	GATC	3 cut(s)	354, 426, 573
MboII	GAAGA	1 cut(s)	16
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	51, 99, 204, 273, 475
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	328
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	498
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	3 cut(s)	171, 381, 519
MvaI	CCWGG	3 cut(s)	171, 381, 519
MwoI	GCNNNNNNNGC	2 cut(s)	149, 600
NcoI	CCATGG	1 cut(s)	595
NdeII	GATC	3 cut(s)	354, 426, 573
NlaIII	CATG	7 cut(s)	188, 257, 326, 398, 467, 536, 599
PfeI	GAWTC	4 cut(s)	216, 266, 407, 581
PflMI	CCANNNNNTGG	3 cut(s)	170, 449, 596
Psp6I	CCWGG	3 cut(s)	169, 379, 517
PspGI	CCWGG	3 cut(s)	169, 379, 517
PspPI	GGNCC	7 cut(s)	161, 230, 299, 371, 440, 509, 587
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
SaqAI	TTAA	1 cut(s)	498
Sau3AI	GATC	3 cut(s)	354, 426, 573
Sau96I	GGNCC	7 cut(s)	161, 230, 299, 371, 440, 509, 587
ScrFI	CCNGG	3 cut(s)	171, 381, 519
SinI	GGWCC	7 cut(s)	161, 230, 299, 371, 440, 509, 587
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
SpeI	ACTAGT	1 cut(s)	542
Sse9I	AATT	5 cut(s)	51, 99, 204, 273, 475
SspMI	CTAG	3 cut(s)	60, 543, 560
StyD4I	CCNGG	3 cut(s)	169, 379, 517
StyI	CCWWGG	1 cut(s)	595
TaaI	ACNGT	2 cut(s)	11, 346
TaiI	ACGT	1 cut(s)	91
TasI	AATT	5 cut(s)	51, 99, 204, 273, 475
TatI	WGTACW	1 cut(s)	132
TfiI	GAWTC	4 cut(s)	216, 266, 407, 581
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TscAI	CASTG	2 cut(s)	409, 610
TspDTI	ATGAA	2 cut(s)	161, 309
TspRI	CASTG	2 cut(s)	409, 610
Van91I	CCANNNNNTGG	3 cut(s)	170, 449, 596
VpaK11BI	GGWCC	7 cut(s)	161, 230, 299, 371, 440, 509, 587
XagI	CCTNNNNNAGG	1 cut(s)	558
XapI	RAATTY	2 cut(s)	204, 273
XcmI	CCANNNNNNNNNTGG	1 cut(s)	602
XspI	CTAG	3 cut(s)	60, 543, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.