Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0018037

Physical Location & Seq

Genomic Coordinates Forward (+)

61628957 .. 61630178

Gene Structure 1222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0501300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGATTGATTCGCCTTCAGTGAGATTGGAACTTATCACTTGCCTTCAGACGATTGATAGCAACAACTATCCTGAGACTTTGAATTGTATGTTTATCATCAATGCTGGTTCTGGTTTTAGAATGTTGTGGAGCACTGTGAAGCCCTTCCTTGGTCCCAAGACAACTGAAAAGATTAATGTCCTTGGTGACAAGAGCAAGTTACTTCAAATAATTGATGCTAGGCTTGGCGTCACCATTCTAATTTCAGCAGGGGGAAAGCATCTTGCTTCTGATACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

92

Amino Acids

10.04

Weight (kDa)

7.79

Isoelectric Point (pI)

39.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	16 - 73	3.4e-13	CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018037)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g08470
rosa_chinensis	RchiOBHm_Chr7g0189941
rosa_laevigata	RLG00000004575
rosa_multiflora	Rmu_co8509437.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265030
rosa_rugosa	Rorug06G0501300
rosa_samantha	Rh7AG106400 Rh7BG109100 Rh7CG111200 Rh7DG109600
rosa_wichuraiana	Rw7G009240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	29
AcyI	GRCGYC	1 cut(s)	228
AfiI	CCNNNNNNNGG	1 cut(s)	149
AgsI	TTSAA	2 cut(s)	82, 206
Alw21I	GWGCWC	1 cut(s)	134
Alw26I	GTCTC	1 cut(s)	68
AseI	ATTAAT	1 cut(s)	174
Asp700I	GAANNNNTTC	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	152
AsuHPI	GGTGA	2 cut(s)	197, 223
AvaII	GGWCC	1 cut(s)	152
Bbv12I	GWGCWC	1 cut(s)	134
BcoDI	GTCTC	1 cut(s)	68
BfaI	CTAG	1 cut(s)	219
Bme18I	GGWCC	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	152
BmiI	GGNNCC	1 cut(s)	154
BmsI	GCATC	2 cut(s)	205, 268
BsaHI	GRCGYC	1 cut(s)	228
BsaJI	CCNNGG	2 cut(s)	148, 181
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
BseDI	CCNNGG	2 cut(s)	148, 181
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseMII	CTCAG	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	134
BslFI	GGGAC	1 cut(s)	138
BslI	CCNNNNNNNGG	1 cut(s)	149
BsmAI	GTCTC	1 cut(s)	68
BsmFI	GGGAC	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	134
BspCNI	CTCAG	1 cut(s)	64
BspLI	GGNNCC	1 cut(s)	154
BssECI	CCNNGG	2 cut(s)	148, 181
BssNI	GRCGYC	1 cut(s)	228
BssT1I	CCWWGG	2 cut(s)	148, 181
Bst4CI	ACNGT	1 cut(s)	136
BstACI	GRCGYC	1 cut(s)	228
BstDEI	CTNAG	1 cut(s)	72
BstMAI	GTCTC	1 cut(s)	68
BtsIMutI	CAGTG	2 cut(s)	24, 132
Cfr13I	GGNCC	1 cut(s)	152
CseI	GACGC	1 cut(s)	217
CviJI	RGCY	2 cut(s)	142, 223
CviKI_1	RGCY	2 cut(s)	142, 223
DdeI	CTNAG	1 cut(s)	72
Eco130I	CCWWGG	2 cut(s)	148, 181
Eco47I	GGWCC	1 cut(s)	152
Eco57I	CTGAAG	1 cut(s)	29
EcoT14I	CCWWGG	2 cut(s)	148, 181
ErhI	CCWWGG	2 cut(s)	148, 181
FaiI	YATR	1 cut(s)	89
FaqI	GGGAC	1 cut(s)	138
FspBI	CTAG	1 cut(s)	219
HgaI	GACGC	1 cut(s)	217
Hin1I	GRCGYC	1 cut(s)	228
HinfI	GANTC	1 cut(s)	8
HphI	GGTGA	2 cut(s)	197, 223
Hpy188I	TCNGA	2 cut(s)	48, 271
Hpy188III	TCNNGA	1 cut(s)	71
HpyAV	CCTTC	3 cut(s)	24, 53, 154
HpyCH4III	ACNGT	1 cut(s)	136
HpyF3I	CTNAG	1 cut(s)	72
Hsp92I	GRCGYC	1 cut(s)	228
LmnI	GCTCC	1 cut(s)	129
LpnPI	CCDG	4 cut(s)	84, 90, 96, 234
LweI	GCATC	2 cut(s)	205, 268
MaeI	CTAG	1 cut(s)	219
MaeIII	GTNAC	3 cut(s)	185, 198, 229
MhlI	GDGCHC	1 cut(s)	134
MluCI	AATT	3 cut(s)	82, 210, 240
MroXI	GAANNNNTTC	1 cut(s)	143
MseI	TTAA	2 cut(s)	174, 277
NlaIV	GGNNCC	1 cut(s)	154
NmuCI	GTSAC	2 cut(s)	185, 229
PdmI	GAANNNNTTC	1 cut(s)	143
PfeI	GAWTC	1 cut(s)	8
PshBI	ATTAAT	1 cut(s)	174
PspN4I	GGNNCC	1 cut(s)	154
PspPI	GGNCC	1 cut(s)	152
SaqAI	TTAA	2 cut(s)	174, 277
Sau96I	GGNCC	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	134
SfaNI	GCATC	2 cut(s)	205, 268
SinI	GGWCC	1 cut(s)	152
Sse9I	AATT	3 cut(s)	82, 210, 240
SspMI	CTAG	1 cut(s)	219
StyI	CCWWGG	2 cut(s)	148, 181
TaaI	ACNGT	1 cut(s)	136
TasI	AATT	3 cut(s)	82, 210, 240
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	2 cut(s)	174, 277
Tru9I	TTAA	2 cut(s)	174, 277
TscAI	CASTG	2 cut(s)	24, 139
TseFI	GTSAC	2 cut(s)	185, 229
Tsp45I	GTSAC	2 cut(s)	185, 229
TspRI	CASTG	2 cut(s)	24, 139
VpaK11BI	GGWCC	1 cut(s)	152
VspI	ATTAAT	1 cut(s)	174
XmnI	GAANNNNTTC	1 cut(s)	143
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.