Rorug07G0253900

disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0031056
Physical Location & Seq
Reverse (-)
23633156 .. 23636521
3366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0253900.1

Sequence Viewer

Length: 1056 bp
ATGGCTCTCAATCTCGTCTTCACCTCACACTCTTCTCTCTTCTCCAAACCCCTCACATTTCCAACCCCGAAACCCCAATCCCTCTCCCTACTCTCTCTCTCCTCCCCAAACCCAAACCCCAAGCTCTCCTCCTTCCGCCCCCGCTCCTCTCTCTCCGACGACACCCCCACCGACGGCGACCGTCCGGCGGCGAAAATCACCGACGAGTGGGGCGAGGCGGCCGAGCCGGAGCCGGAGCCCGAGTCGACAATCTCCGAATCGGACCCTCCGGTGAACGAGGACGAGTGGGGAGGAGCTGATGAGGCCGTGGAAATCGGGAATGGAACTCCGGCCAAAGCTGAGGCTGAGAGCACGGAGGAGGTGGATTCTAAGCTCACTGAGCTGAAGAGGTGCTTGGTAGATACGTTCTATGGGACTGAATTGGGCTTTCGGGCCGGGTCGGAGGTGAGAGCGGAAGTGGTGGAGTTGGTTAACCAATTGGAGGCGGCGAATCCCACTCCGGCGCCGACGGAGAACCCGGGGCTACTTGATGGCAACTGGGTTTTACTGTACACTGCATCTTCTGAGCTGTTGCCACTTCTGGCAGCAGGTAGCACATCTTTGTTGAAAGTCGATAAAATTAACCAATCAATTGACACCAGCAGTCAGACAATTCTGAACTCCATCACATTGTCCGGGCCTTTTGCCACTTTCTCTTTCAGTGCATCTGCTAGCTTTGAAGTCAGAAGTCCTTCAAGAATCCAGGTTGAATTCAAGGAAGGCACCTTTCAGCCACCAGACATAAAGTCAAGCATTGATCTCCCACAAGATGTGGAAATATTTGGGCAGAGAATCAATTTGTCACCTGTCCAGCAAACTCTCAGTCCTCTGCAGGAGGTTGTTGCGAGTATCTCAAGAACCATCTCTGGTCAGCAATCACTTAAGGTTCCCATTCCAGGTGAGCGGACCCAGTCTTGGCTTCTTACTACGTACCTTGATGGCGATCTCCGAATCTCAAGGGGGGATGGTGGTCTCTTTGTTCTTGCAAAAGAAGGGAGTCCTCTCCTTGATCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

351

Amino Acids

37.72

Weight (kDa)

4.37

Isoelectric Point (pI)

48.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 127 - 342 1.1e-71 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031056)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000271.1_g000043
rosa_rugosa Rorug07G0253900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 578
AccB1I GGYRCC 2 cut(s) 502, 761
AccBSI CCGCTC 3 cut(s) 144, 452, 943
AccI GTMKAC 1 cut(s) 245
AciI CCGC 7 cut(s) 136, 142, 188, 218, 452, 485, 943
AcoI YGGCCR 2 cut(s) 219, 330
AcsI RAATTY 1 cut(s) 749
AcuI CTGAAG 1 cut(s) 404
AcyI GRCGYC 1 cut(s) 503
AfaI GTAC 2 cut(s) 551, 971
AfiI CCNNNNNNNGG 6 cut(s) 173, 187, 207, 481, 935, 954
AflII CTTAAG 1 cut(s) 920
AgsI TTSAA 5 cut(s) 607, 719, 735, 749, 754
AhdI GACNNNNNGTC 1 cut(s) 784
AjnI CCWGG 2 cut(s) 741, 934
AjuI GAANNNNNNNTTGG 2 cut(s) 377, 409
AluBI AGCT 7 cut(s) 124, 296, 338, 373, 382, 568, 714
AluI AGCT 7 cut(s) 124, 296, 338, 373, 382, 568, 714
Alw21I GWGCWC 1 cut(s) 353
Alw26I GTCTC 1 cut(s) 1016
Ama87I CYCGRG 2 cut(s) 239, 517
AoxI GGCC 5 cut(s) 219, 303, 330, 432, 677
ApeKI GCWGC 1 cut(s) 584
ApoI RAATTY 1 cut(s) 749
ArsI GACNNNNNNTTYG 2 cut(s) 847, 879
Asp700I GAANNNNTTC 1 cut(s) 730
AspLEI GCGC 1 cut(s) 505
AspS9I GGNCC 4 cut(s) 262, 432, 677, 945
AsuC2I CCSGG 4 cut(s) 436, 518, 519, 676
AsuHPI GGTGA 6 cut(s) 13, 190, 283, 457, 834, 950
AsuNHI GCTAGC 1 cut(s) 710
AvaI CYCGRG 2 cut(s) 239, 517
AvaII GGWCC 2 cut(s) 262, 945
BanI GGYRCC 2 cut(s) 502, 761
BanII GRGCYC 1 cut(s) 240
BbsI GAAGAC 1 cut(s) 10
Bbv12I GWGCWC 1 cut(s) 353
BbvCI CCTCAGC 1 cut(s) 339
BbvI GCAGC 1 cut(s) 596
BccI CCATC 5 cut(s) 524, 671, 908, 971, 998
BceAI ACGGC 2 cut(s) 190, 290
BciT130I CCWGG 2 cut(s) 743, 936
BclI TGATCA 1 cut(s) 1048
BcnI CCSGG 4 cut(s) 436, 518, 519, 676
BcoDI GTCTC 1 cut(s) 1016
BfaI CTAG 1 cut(s) 711
BfmI CTRYAG 1 cut(s) 869
BfoI RGCGCY 1 cut(s) 506
BfrI CTTAAG 1 cut(s) 920
BfuAI ACCTGC 1 cut(s) 578
BisI GCNGC 4 cut(s) 189, 219, 486, 585
BlsI GCNGC 4 cut(s) 190, 220, 487, 586
Bme1390I CCNGG 6 cut(s) 436, 518, 519, 676, 743, 936
Bme18I GGWCC 2 cut(s) 262, 945
BmeRI GACNNNNNGTC 1 cut(s) 784
BmeT110I CYCGRG 2 cut(s) 239, 517
BmgT120I GGNCC 4 cut(s) 262, 432, 677, 945
BmiI GGNNCC 7 cut(s) 231, 237, 264, 504, 763, 927, 947
BmrFI CCNGG 6 cut(s) 436, 518, 519, 676, 743, 936
BmrI ACTGGG 2 cut(s) 547, 943
BmsI GCATC 2 cut(s) 566, 713
BmtI GCTAGC 1 cut(s) 714
BmuI ACTGGG 2 cut(s) 547, 943
BpiI GAAGAC 1 cut(s) 10
Bpu10I CCTNAGC 1 cut(s) 339
BpuEI CTTGAG 2 cut(s) 877, 979
BpuMI CCSGG 4 cut(s) 436, 518, 519, 676
BsaAI YACGTR 1 cut(s) 969
BsaBI GATNNNNATC 1 cut(s) 981
BsaHI GRCGYC 1 cut(s) 503
BsaI GGTCTC 1 cut(s) 1016
BsaJI CCNNGG 3 cut(s) 306, 517, 518
BsaWI WCCGGW 1 cut(s) 268
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bsc4I CCNNNNNNNGG 6 cut(s) 173, 187, 207, 481, 935, 954
Bse1I ACTGG 2 cut(s) 542, 949
Bse8I GATNNNNATC 1 cut(s) 981
BseBI CCWGG 2 cut(s) 743, 936
BseDI CCNNGG 3 cut(s) 306, 517, 518
BseGI GGATG 1 cut(s) 1009
BseJI GATNNNNATC 1 cut(s) 981
BseLI CCNNNNNNNGG 6 cut(s) 173, 187, 207, 481, 935, 954
BseMII CTCAG 5 cut(s) 330, 336, 369, 555, 874
BseNI ACTGG 2 cut(s) 542, 949
BseRI GAGGAG 5 cut(s) 91, 118, 136, 306, 371
BseX3I CGGCCG 1 cut(s) 219
BseXI GCAGC 1 cut(s) 596
Bsh1285I CGRYCG 2 cut(s) 181, 222
BshFI GGCC 5 cut(s) 221, 305, 332, 434, 679
BshNI GGYRCC 2 cut(s) 502, 761
BsiEI CGRYCG 2 cut(s) 181, 222
BsiHKAI GWGCWC 1 cut(s) 353
BsiHKCI CYCGRG 2 cut(s) 239, 517
BsiSI CCGG 9 cut(s) 185, 227, 233, 269, 329, 435, 500, 518, 675
BslFI GGGAC 1 cut(s) 427
BslI CCNNNNNNNGG 6 cut(s) 173, 187, 207, 481, 935, 954
BsmAI GTCTC 1 cut(s) 1016
BsmFI GGGAC 1 cut(s) 427
BsnI GGCC 5 cut(s) 221, 305, 332, 434, 679
Bso31I GGTCTC 1 cut(s) 1016
BsoBI CYCGRG 2 cut(s) 239, 517
Bsp1286I GDGCHC 2 cut(s) 240, 353
Bsp1407I TGTACA 1 cut(s) 549
Bsp143I GATC 3 cut(s) 796, 982, 1048
BspACI CCGC 7 cut(s) 136, 142, 188, 218, 452, 485, 943
BspANI GGCC 5 cut(s) 221, 305, 332, 434, 679
BspCNI CTCAG 5 cut(s) 331, 337, 370, 556, 873
BspLI GGNNCC 7 cut(s) 231, 237, 264, 504, 763, 927, 947
BspMAI CTGCAG 1 cut(s) 873
BspMI ACCTGC 1 cut(s) 578
BspOI GCTAGC 1 cut(s) 714
BspT107I GGYRCC 2 cut(s) 502, 761
BspTI CTTAAG 1 cut(s) 920
BspTNI GGTCTC 1 cut(s) 1016
BsrBI CCGCTC 3 cut(s) 144, 452, 943
BsrGI TGTACA 1 cut(s) 549
BsrI ACTGG 2 cut(s) 542, 949
BssECI CCNNGG 3 cut(s) 306, 517, 518
BssMI GATC 3 cut(s) 796, 982, 1048
BssNI GRCGYC 1 cut(s) 503
Bst2UI CCWGG 2 cut(s) 743, 936
Bst4CI ACNGT 2 cut(s) 182, 549
Bst6I CTCTTC 3 cut(s) 37, 44, 380
BstACI GRCGYC 1 cut(s) 503
BstAFI CTTAAG 1 cut(s) 920
BstAUI TGTACA 1 cut(s) 549
BstBAI YACGTR 1 cut(s) 969
BstC8I GCNNGC 1 cut(s) 712
BstDEI CTNAG 6 cut(s) 339, 345, 369, 378, 564, 860
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 1 cut(s) 1009
BstH2I RGCGCY 1 cut(s) 506
BstHHI GCGC 1 cut(s) 505
BstKTI GATC 3 cut(s) 799, 985, 1051
BstMAI GTCTC 1 cut(s) 1016
BstMBI GATC 3 cut(s) 796, 982, 1048
BstMCI CGRYCG 2 cut(s) 181, 222
BstMWI GCNNNNNNNGC 2 cut(s) 302, 379
BstNI CCWGG 2 cut(s) 743, 936
BstSCI CCNGG 6 cut(s) 434, 516, 517, 674, 741, 934
BstSFI CTRYAG 1 cut(s) 869
BstSNI TACGTA 1 cut(s) 969
BstV1I GCAGC 1 cut(s) 596
BstV2I GAAGAC 1 cut(s) 10
BstZI CGGCCG 1 cut(s) 219
BsuRI GGCC 5 cut(s) 221, 305, 332, 434, 679
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 1 cut(s) 1009
BtsI GCAGTG 1 cut(s) 552
BtsIMutI CAGTG 3 cut(s) 375, 552, 706
BveI ACCTGC 1 cut(s) 578
Cac8I GCNNGC 1 cut(s) 712
CfoI GCGC 1 cut(s) 505
Cfr13I GGNCC 4 cut(s) 262, 432, 677, 945
Cfr9I CCCGGG 1 cut(s) 517
Csp6I GTAC 2 cut(s) 550, 970
CviQI GTAC 2 cut(s) 550, 970
DdeI CTNAG 6 cut(s) 339, 345, 369, 378, 564, 860
DinI GGCGCC 1 cut(s) 504
DpnI GATC 3 cut(s) 798, 984, 1050
DpnII GATC 3 cut(s) 796, 982, 1048
DriI GACNNNNNGTC 1 cut(s) 784
EaeI YGGCCR 2 cut(s) 219, 330
EagI CGGCCG 1 cut(s) 219
Eam1104I CTCTTC 3 cut(s) 37, 44, 380
Eam1105I GACNNNNNGTC 1 cut(s) 784
EarI CTCTTC 3 cut(s) 37, 44, 380
EciI GGCGGA 1 cut(s) 125
EclXI CGGCCG 1 cut(s) 219
Eco105I TACGTA 1 cut(s) 969
Eco24I GRGCYC 1 cut(s) 240
Eco31I GGTCTC 1 cut(s) 1016
Eco47I GGWCC 2 cut(s) 262, 945
Eco52I CGGCCG 1 cut(s) 219
Eco57I CTGAAG 1 cut(s) 404
Eco88I CYCGRG 2 cut(s) 239, 517
EcoRI GAATTC 1 cut(s) 749
EcoRII CCWGG 2 cut(s) 741, 934
EcoT38I GRGCYC 1 cut(s) 240
EgeI GGCGCC 1 cut(s) 504
EheI GGCGCC 1 cut(s) 504
FaiI YATR 2 cut(s) 411, 782
FalI AAGNNNNNCTT 2 cut(s) 377, 409
FaqI GGGAC 1 cut(s) 427
FauI CCCGC 1 cut(s) 149
FbaI TGATCA 1 cut(s) 1048
FblI GTMKAC 1 cut(s) 245
Fnu4HI GCNGC 4 cut(s) 189, 219, 486, 585
FokI GGATG 1 cut(s) 1016
FriOI GRGCYC 1 cut(s) 240
Fsp4HI GCNGC 4 cut(s) 189, 219, 486, 585
FspBI CTAG 1 cut(s) 711
GlaI GCGC 1 cut(s) 504
GluI GCNGC 4 cut(s) 189, 219, 486, 585
HaeII RGCGCY 1 cut(s) 506
HaeIII GGCC 5 cut(s) 221, 305, 332, 434, 679
HapII CCGG 9 cut(s) 185, 227, 233, 269, 329, 435, 500, 518, 675
HhaI GCGC 1 cut(s) 505
Hin1I GRCGYC 1 cut(s) 503
Hin6I GCGC 1 cut(s) 503
HinP1I GCGC 1 cut(s) 503
HincII GTYRAC 2 cut(s) 246, 472
HindII GTYRAC 2 cut(s) 246, 472
HinfI GANTC 8 cut(s) 242, 257, 365, 490, 738, 831, 990, 1036
HpaI GTTAAC 1 cut(s) 472
HpaII CCGG 9 cut(s) 185, 227, 233, 269, 329, 435, 500, 518, 675
HphI GGTGA 6 cut(s) 13, 190, 283, 457, 834, 950
Hpy166II GTNNAC 4 cut(s) 246, 274, 472, 552
Hpy188I TCNGA 9 cut(s) 157, 256, 262, 442, 565, 648, 657, 725, 989
Hpy188III TCNNGA 3 cut(s) 316, 735, 894
Hpy8I GTNNAC 4 cut(s) 246, 274, 472, 552
Hpy99I CGWCG 4 cut(s) 161, 176, 206, 511
HpyAV CCTTC 4 cut(s) 142, 741, 752, 1025
HpyCH4III ACNGT 2 cut(s) 182, 549
HpyCH4IV ACGT 2 cut(s) 404, 968
HpyCH4V TGCA 4 cut(s) 557, 704, 871, 1025
HpyF10VI GCNNNNNNNGC 2 cut(s) 302, 379
HpyF3I CTNAG 6 cut(s) 339, 345, 369, 378, 564, 860
HpySE526I ACGT 2 cut(s) 404, 968
Hsp92I GRCGYC 1 cut(s) 503
HspAI GCGC 1 cut(s) 503
KasI GGCGCC 1 cut(s) 502
Ksp22I TGATCA 1 cut(s) 1048
KspAI GTTAAC 1 cut(s) 472
Kzo9I GATC 3 cut(s) 796, 982, 1048
LmnI GCTCC 4 cut(s) 149, 229, 235, 293
Lsp1109I GCAGC 1 cut(s) 596
LweI GCATC 2 cut(s) 566, 713
MaeI CTAG 1 cut(s) 711
MaeII ACGT 2 cut(s) 404, 968
MaeIII GTNAC 1 cut(s) 840
MalI GATC 3 cut(s) 798, 984, 1050
MbiI CCGCTC 3 cut(s) 144, 452, 943
MboI GATC 3 cut(s) 796, 982, 1048
MboII GAAGA 5 cut(s) 10, 24, 31, 397, 552
MfeI CAATTG 2 cut(s) 476, 630
MhlI GDGCHC 2 cut(s) 240, 353
MluCI AATT 7 cut(s) 419, 476, 618, 630, 651, 749, 835
Mly113I GGCGCC 1 cut(s) 503
MlyI GAGTC 2 cut(s) 251, 1045
MmeI TCCRAC 3 cut(s) 86, 180, 420
MroXI GAANNNNTTC 1 cut(s) 730
MseI TTAA 3 cut(s) 471, 621, 921
MspCI CTTAAG 1 cut(s) 920
MspI CCGG 9 cut(s) 185, 227, 233, 269, 329, 435, 500, 518, 675
MspR9I CCNGG 6 cut(s) 436, 518, 519, 676, 743, 936
MunI CAATTG 2 cut(s) 476, 630
MvaI CCWGG 2 cut(s) 743, 936
MwoI GCNNNNNNNGC 2 cut(s) 302, 379
NarI GGCGCC 1 cut(s) 503
NciI CCSGG 4 cut(s) 436, 518, 519, 676
NdeII GATC 3 cut(s) 796, 982, 1048
NheI GCTAGC 1 cut(s) 710
NlaIV GGNNCC 7 cut(s) 231, 237, 264, 504, 763, 927, 947
NmeAIII GCCGAG 1 cut(s) 247
NmuCI GTSAC 1 cut(s) 840
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 730
PfeI GAWTC 6 cut(s) 257, 365, 490, 738, 831, 990
PflFI GACNNNGTC 1 cut(s) 949
PkrI GCNGC 4 cut(s) 190, 220, 487, 586
PleI GAGTC 2 cut(s) 250, 1044
PluTI GGCGCC 1 cut(s) 506
PpsI GAGTC 2 cut(s) 250, 1044
Ppu21I YACGTR 1 cut(s) 969
Psp6I CCWGG 2 cut(s) 741, 934
PspGI CCWGG 2 cut(s) 741, 934
PspN4I GGNNCC 7 cut(s) 231, 237, 264, 504, 763, 927, 947
PspPI GGNCC 4 cut(s) 262, 432, 677, 945
PstI CTGCAG 1 cut(s) 873
PsyI GACNNNGTC 1 cut(s) 949
RsaI GTAC 2 cut(s) 551, 971
RsaNI GTAC 2 cut(s) 550, 970
SalI GTCGAC 1 cut(s) 244
SaqAI TTAA 3 cut(s) 471, 621, 921
SatI GCNGC 4 cut(s) 189, 219, 486, 585
Sau3AI GATC 3 cut(s) 796, 982, 1048
Sau96I GGNCC 4 cut(s) 262, 432, 677, 945
SchI GAGTC 2 cut(s) 251, 1045
ScrFI CCNGG 6 cut(s) 436, 518, 519, 676, 743, 936
SduI GDGCHC 2 cut(s) 240, 353
SfaNI GCATC 2 cut(s) 566, 713
SfcI CTRYAG 1 cut(s) 869
SfoI GGCGCC 1 cut(s) 504
SinI GGWCC 2 cut(s) 262, 945
SmaI CCCGGG 1 cut(s) 519
SmlI CTYRAG 3 cut(s) 892, 920, 994
SmoI CTYRAG 3 cut(s) 892, 920, 994
SnaBI TACGTA 1 cut(s) 969
Sse9I AATT 7 cut(s) 419, 476, 618, 630, 651, 749, 835
SsiI CCGC 7 cut(s) 136, 142, 188, 218, 452, 485, 943
SspDI GGCGCC 1 cut(s) 502
SspI AATATT 1 cut(s) 819
SspMI CTAG 1 cut(s) 711
StyD4I CCNGG 6 cut(s) 434, 516, 517, 674, 741, 934
TaaI ACNGT 2 cut(s) 182, 549
TaiI ACGT 2 cut(s) 407, 971
TaqI TCGA 2 cut(s) 245, 612
TasI AATT 7 cut(s) 419, 476, 618, 630, 651, 749, 835
TatI WGTACW 1 cut(s) 549
TauI GCSGC 3 cut(s) 191, 221, 488
TfiI GAWTC 6 cut(s) 257, 365, 490, 738, 831, 990
Tru1I TTAA 3 cut(s) 471, 621, 921
Tru9I TTAA 3 cut(s) 471, 621, 921
TscAI CASTG 3 cut(s) 382, 559, 706
TseFI GTSAC 1 cut(s) 840
TseI GCWGC 1 cut(s) 584
Tsp45I GTSAC 1 cut(s) 840
TspGWI ACGGA 2 cut(s) 368, 524
TspMI CCCGGG 1 cut(s) 517
TspRI CASTG 3 cut(s) 382, 559, 706
Tth111I GACNNNGTC 1 cut(s) 949
Vha464I CTTAAG 1 cut(s) 920
VpaK11BI GGWCC 2 cut(s) 262, 945
XapI RAATTY 1 cut(s) 749
XmaI CCCGGG 1 cut(s) 517
XmiI GTMKAC 1 cut(s) 245
XmnI GAANNNNTTC 1 cut(s) 730
XspI CTAG 1 cut(s) 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.