Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0029924

Physical Location & Seq

Genomic Coordinates Reverse (-)

10314965 .. 10318747

Gene Structure 3783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG061800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

GTGGGGATTGGGTGGAATAGAGGTTTTGCTATTACTGTATCCACTCTAAACAGAGCCAAACGCATTATAATAACATTTAACAATAATATAAGTGGGCTCCAGTCGTCCAGTGGTTTTCAACTTCTTATGGTGTGGTGCCGAGACAGCGAAGAACTCCTCTTTCGTATATATTCATTTGCTCCGATTAAAACCCTAGCTTCCTCTTTGCCTCTTCTTCCTGTGCCCTTTTTCTGTGTGTGGCGCCTTTCTATCAGTGGACATAATTTGTTGCGAGAACCACGCTACAACAAAGGACTTGGCTTCACTGAGAAGGAGAGAGATGCTCATTACTTACGTGGCCTTCTGCCTCCAGCCGTCCTGACCCAAGAGCTTCAGGAAAAGAAGATGATGCACAATCTTCGAAAATATGAGGTTCCATTGAAAAGATTTGCTGGCCTCAAGGATACCCTTTTTTTCATGGTTCAAAAGGATGATCTGCTTAATTTTTCGTGTCAGATCAGGAGAATGCCAATTGAGGAACTTTGCCTTCAGGCACTCCTGGTATCACAGATTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004470 GO:0004473 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005911 GO:0006081 GO:0006082 GO:0006090 GO:0006098 GO:0006108 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016043 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0019752 GO:0022607 GO:0030054 GO:0030312 GO:0031090 GO:0032787 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0048046 GO:0050896 GO:0051156 GO:0051186 GO:0051259 GO:0051260 GO:0055044 GO:0055086 GO:0055114 GO:0065003 GO:0071704 GO:0071840 GO:0071944 GO:0072524 GO:0098588 GO:0098805 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00620 ko00710 ko01100 ko01120 ko01200 map00620 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

Malic_M malic

Protein Analysis

185

Amino Acids

21.38

Weight (kDa)

9.69

Isoelectric Point (pI)

66.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029924)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0450811
rosa_samantha	Rh1AG061800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	68
AccB1I	GGYRCC	2 cut(s)	135, 240
AcuI	CTGAAG	2 cut(s)	356, 512
AcyI	GRCGYC	1 cut(s)	241
AgsI	TTSAA	3 cut(s)	119, 421, 464
AjnI	CCWGG	1 cut(s)	537
AluBI	AGCT	2 cut(s)	197, 370
AluI	AGCT	2 cut(s)	197, 370
Alw26I	GTCTC	1 cut(s)	135
AoxI	GGCC	2 cut(s)	337, 433
AspLEI	GCGC	1 cut(s)	243
AsuII	TTCGAA	1 cut(s)	400
BaeGI	GKGCMC	1 cut(s)	225
BanI	GGYRCC	2 cut(s)	135, 240
BanII	GRGCYC	1 cut(s)	99
BceAI	ACGGC	1 cut(s)	338
BcgI	CGANNNNNNTGC	2 cut(s)	380, 414
BciT130I	CCWGG	1 cut(s)	539
BciVI	GTATCC	2 cut(s)	49, 436
BcoDI	GTCTC	1 cut(s)	135
BfaI	CTAG	1 cut(s)	194
BfoI	RGCGCY	1 cut(s)	244
BfuI	GTATCC	2 cut(s)	49, 436
Bme1390I	CCNGG	1 cut(s)	539
BmiI	GGNNCC	4 cut(s)	98, 137, 242, 414
BmrFI	CCNGG	1 cut(s)	539
BmsI	GCATC	2 cut(s)	310, 378
BplI	GAGNNNNNCTC	2 cut(s)	307, 339
BpmI	CTGGAG	2 cut(s)	83, 333
Bpu14I	TTCGAA	1 cut(s)	400
BpuEI	CTTGAG	1 cut(s)	422
BsaAI	YACGTR	1 cut(s)	335
BsaHI	GRCGYC	1 cut(s)	241
Bse1I	ACTGG	2 cut(s)	100, 108
BseBI	CCWGG	1 cut(s)	539
BseGI	GGATG	1 cut(s)	475
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	2 cut(s)	100, 108
BseRI	GAGGAG	1 cut(s)	146
BseSI	GKGCMC	1 cut(s)	225
BshFI	GGCC	2 cut(s)	339, 435
BshNI	GGYRCC	2 cut(s)	135, 240
BsmAI	GTCTC	1 cut(s)	135
BsmI	GAATGC	1 cut(s)	510
BsnI	GGCC	2 cut(s)	339, 435
Bsp119I	TTCGAA	1 cut(s)	400
Bsp1286I	GDGCHC	2 cut(s)	99, 225
Bsp143I	GATC	2 cut(s)	472, 495
BspANI	GGCC	2 cut(s)	339, 435
BspCNI	CTCAG	1 cut(s)	298
BspLI	GGNNCC	4 cut(s)	98, 137, 242, 414
BspT104I	TTCGAA	1 cut(s)	400
BspT107I	GGYRCC	2 cut(s)	135, 240
BsrI	ACTGG	2 cut(s)	100, 108
BssMI	GATC	2 cut(s)	472, 495
BssNI	GRCGYC	1 cut(s)	241
Bst2UI	CCWGG	1 cut(s)	539
Bst4CI	ACNGT	1 cut(s)	37
Bst6I	CTCTTC	1 cut(s)	216
BstACI	GRCGYC	1 cut(s)	241
BstBAI	YACGTR	1 cut(s)	335
BstBI	TTCGAA	1 cut(s)	400
BstC8I	GCNNGC	1 cut(s)	433
BstDEI	CTNAG	1 cut(s)	306
BstF5I	GGATG	1 cut(s)	475
BstH2I	RGCGCY	1 cut(s)	244
BstHHI	GCGC	1 cut(s)	243
BstKTI	GATC	2 cut(s)	475, 498
BstMAI	GTCTC	1 cut(s)	135
BstMBI	GATC	2 cut(s)	472, 495
BstMWI	GCNNNNNNNGC	1 cut(s)	144
BstNI	CCWGG	1 cut(s)	539
BstSCI	CCNGG	1 cut(s)	537
BstSLI	GKGCMC	1 cut(s)	225
BsuI	GTATCC	2 cut(s)	49, 436
BsuRI	GGCC	2 cut(s)	339, 435
BtsCI	GGATG	1 cut(s)	475
BtsIMutI	CAGTG	3 cut(s)	115, 259, 303
Cac8I	GCNNGC	1 cut(s)	433
CfoI	GCGC	1 cut(s)	243
CviAII	CATG	1 cut(s)	457
CviJI	RGCY	8 cut(s)	56, 97, 197, 300, 339, 353, 370, 435
CviKI_1	RGCY	8 cut(s)	56, 97, 197, 300, 339, 353, 370, 435
DdeI	CTNAG	1 cut(s)	306
DinI	GGCGCC	1 cut(s)	242
DpnI	GATC	2 cut(s)	474, 497
DpnII	GATC	2 cut(s)	472, 495
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco24I	GRGCYC	1 cut(s)	99
Eco57I	CTGAAG	2 cut(s)	356, 512
EcoRII	CCWGG	1 cut(s)	537
EcoT38I	GRGCYC	1 cut(s)	99
EgeI	GGCGCC	1 cut(s)	242
EheI	GGCGCC	1 cut(s)	242
FaeI	CATG	1 cut(s)	460
FaiI	YATR	9 cut(s)	68, 89, 128, 167, 169, 261, 408, 458, 554
FatI	CATG	1 cut(s)	456
FokI	GGATG	1 cut(s)	482
FriOI	GRGCYC	1 cut(s)	99
FspBI	CTAG	1 cut(s)	194
GlaI	GCGC	1 cut(s)	242
GsuI	CTGGAG	2 cut(s)	83, 333
HaeII	RGCGCY	1 cut(s)	244
HaeIII	GGCC	2 cut(s)	339, 435
HhaI	GCGC	1 cut(s)	243
Hin1I	GRCGYC	1 cut(s)	241
Hin1II	CATG	1 cut(s)	460
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
Hpy166II	GTNNAC	1 cut(s)	257
Hpy188I	TCNGA	2 cut(s)	183, 495
Hpy188III	TCNNGA	3 cut(s)	358, 374, 499
Hpy8I	GTNNAC	1 cut(s)	257
HpyAV	CCTTC	3 cut(s)	304, 350, 536
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4IV	ACGT	1 cut(s)	334
HpyCH4V	TGCA	1 cut(s)	391
HpyF10VI	GCNNNNNNNGC	1 cut(s)	144
HpyF3I	CTNAG	1 cut(s)	306
HpySE526I	ACGT	1 cut(s)	334
Hsp92I	GRCGYC	1 cut(s)	241
Hsp92II	CATG	1 cut(s)	460
HspAI	GCGC	1 cut(s)	241
KasI	GGCGCC	1 cut(s)	240
Kzo9I	GATC	2 cut(s)	472, 495
LmnI	GCTCC	2 cut(s)	102, 184
LweI	GCATC	2 cut(s)	310, 378
MaeI	CTAG	1 cut(s)	194
MaeII	ACGT	1 cut(s)	334
MalI	GATC	2 cut(s)	474, 497
MboI	GATC	2 cut(s)	472, 495
MboII	GAAGA	5 cut(s)	161, 203, 206, 389, 394
MfeI	CAATTG	1 cut(s)	510
MhlI	GDGCHC	2 cut(s)	99, 225
MluCI	AATT	3 cut(s)	262, 481, 510
Mly113I	GGCGCC	1 cut(s)	241
MnlI	CCTC	8 cut(s)	14, 167, 211, 219, 357, 403, 446, 508
MseI	TTAA	3 cut(s)	78, 186, 480
MspR9I	CCNGG	1 cut(s)	539
MunI	CAATTG	1 cut(s)	510
Mva1269I	GAATGC	1 cut(s)	510
MvaI	CCWGG	1 cut(s)	539
MwoI	GCNNNNNNNGC	1 cut(s)	144
NarI	GGCGCC	1 cut(s)	241
NdeII	GATC	2 cut(s)	472, 495
NlaIII	CATG	1 cut(s)	460
NlaIV	GGNNCC	4 cut(s)	98, 137, 242, 414
NmeAIII	GCCGAG	1 cut(s)	164
NspV	TTCGAA	1 cut(s)	400
PctI	GAATGC	1 cut(s)	510
PluTI	GGCGCC	1 cut(s)	244
Ppu21I	YACGTR	1 cut(s)	335
PsiI	TTATAA	1 cut(s)	68
Psp6I	CCWGG	1 cut(s)	537
PspGI	CCWGG	1 cut(s)	537
PspN4I	GGNNCC	4 cut(s)	98, 137, 242, 414
SaqAI	TTAA	3 cut(s)	78, 186, 480
Sau3AI	GATC	2 cut(s)	472, 495
ScrFI	CCNGG	1 cut(s)	539
SduI	GDGCHC	2 cut(s)	99, 225
SetI	ASST	5 cut(s)	25, 199, 337, 372, 414
SfaNI	GCATC	2 cut(s)	310, 378
SfoI	GGCGCC	1 cut(s)	242
SfuI	TTCGAA	1 cut(s)	400
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
Sse9I	AATT	3 cut(s)	262, 481, 510
SspDI	GGCGCC	1 cut(s)	240
SspMI	CTAG	1 cut(s)	194
StyD4I	CCNGG	1 cut(s)	537
TaaI	ACNGT	1 cut(s)	37
TaiI	ACGT	1 cut(s)	337
TaqI	TCGA	1 cut(s)	400
TasI	AATT	3 cut(s)	262, 481, 510
Tru1I	TTAA	3 cut(s)	78, 186, 480
Tru9I	TTAA	3 cut(s)	78, 186, 480
TscAI	CASTG	3 cut(s)	115, 259, 310
TspDTI	ATGAA	2 cut(s)	162, 445
TspRI	CASTG	3 cut(s)	115, 259, 310
XcmI	CCANNNNNNNNNTGG	1 cut(s)	107
XspI	CTAG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.