Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0032891

Physical Location & Seq

Genomic Coordinates Forward (+)

26476621 .. 26477058

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG139800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGAGTTGCTTCAACTGGTTGCTCTATTTAGCTGCTGCTTTGGCCGTGATACGCAACGAGCTTCTAGTTGATTCAGCTAGTGACAAGAAGCACCACAGCGGACCAGTTGTTAATGTGACCAAGCACCTCATGTTCCCAGATTTCAACCTCTCCTACAACCCCCGAATCTTGAATGATGTAAAGCTCTTAGGCAGTGCCAAGCTTGCTTCAAAAACCAGTGCTATACAAATCCCCGACGAGTCTCATGTCACTGATCTCAGACACCAAGCCGGCCGAGCCATCTACTCTTCTTCAATCCGACTCCTGGACCCTCACCCGAAACCCCTGCCTCTTTCGAAACAACCTTCTCTTTTCAATTCCACAATGCCTCTTCATCTTCTCCTGAACGAATCCAAACTACTCAAAGCGGTGGTTATGGTAATGGCGGCAGTGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0016020 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Lectin_legB Pkinase_Tyr

Protein Analysis

145

Amino Acids

16.02

Weight (kDa)

9.34

Isoelectric Point (pI)

29.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0032891)

Species	Orthologous Gene IDs
rosa_samantha	Rh1AG139800 Rh1CG131700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	99, 407, 425
AcoI	YGGCCR	2 cut(s)	42, 271
AfiI	CCNNNNNNNGG	1 cut(s)	304
AgsI	TTSAA	6 cut(s)	13, 145, 172, 210, 294, 355
AjnI	CCWGG	1 cut(s)	303
AluBI	AGCT	5 cut(s)	32, 61, 77, 184, 202
AluI	AGCT	5 cut(s)	32, 61, 77, 184, 202
Alw26I	GTCTC	1 cut(s)	246
AoxI	GGCC	2 cut(s)	42, 271
ApeKI	GCWGC	2 cut(s)	32, 35
AspS9I	GGNCC	2 cut(s)	101, 307
AsuHPI	GGTGA	1 cut(s)	305
AsuII	TTCGAA	1 cut(s)	335
AvaII	GGWCC	2 cut(s)	101, 307
BbvI	GCAGC	2 cut(s)	19, 22
BccI	CCATC	1 cut(s)	287
BceAI	ACGGC	1 cut(s)	29
BcgI	CGANNNNNNTGC	2 cut(s)	307, 341
BciT130I	CCWGG	1 cut(s)	305
BcoDI	GTCTC	1 cut(s)	246
BfaI	CTAG	3 cut(s)	65, 78, 436
BisI	GCNGC	3 cut(s)	33, 36, 426
BlsI	GCNGC	3 cut(s)	34, 37, 427
Bme1390I	CCNGG	1 cut(s)	305
Bme18I	GGWCC	2 cut(s)	101, 307
BmgT120I	GGNCC	2 cut(s)	101, 307
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	1 cut(s)	305
Bpu14I	TTCGAA	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
Bse118I	RCCGGY	1 cut(s)	269
Bse1I	ACTGG	3 cut(s)	20, 104, 216
BseBI	CCWGG	1 cut(s)	305
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseMII	CTCAG	1 cut(s)	271
BseNI	ACTGG	3 cut(s)	20, 104, 216
BseX3I	CGGCCG	1 cut(s)	271
BseXI	GCAGC	2 cut(s)	19, 22
Bsh1285I	CGRYCG	1 cut(s)	274
BshFI	GGCC	2 cut(s)	44, 273
BsiEI	CGRYCG	1 cut(s)	274
BsiSI	CCGG	1 cut(s)	270
BslI	CCNNNNNNNGG	1 cut(s)	304
BsmAI	GTCTC	1 cut(s)	246
BsnI	GGCC	2 cut(s)	44, 273
Bsp119I	TTCGAA	1 cut(s)	335
Bsp143I	GATC	1 cut(s)	253
BspACI	CCGC	3 cut(s)	99, 407, 425
BspANI	GGCC	2 cut(s)	44, 273
BspCNI	CTCAG	1 cut(s)	270
BspLI	GGNNCC	1 cut(s)	309
BspT104I	TTCGAA	1 cut(s)	335
BsrFI	RCCGGY	1 cut(s)	269
BsrI	ACTGG	3 cut(s)	20, 104, 216
BssAI	RCCGGY	1 cut(s)	269
BssMI	GATC	1 cut(s)	253
Bst2UI	CCWGG	1 cut(s)	305
Bst6I	CTCTTC	2 cut(s)	292, 375
BstBI	TTCGAA	1 cut(s)	335
BstC8I	GCNNGC	2 cut(s)	204, 271
BstDEI	CTNAG	2 cut(s)	187, 257
BstKTI	GATC	1 cut(s)	256
BstMAI	GTCTC	1 cut(s)	246
BstMBI	GATC	1 cut(s)	253
BstMCI	CGRYCG	1 cut(s)	274
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 203, 275
BstNI	CCWGG	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	303
BstV1I	GCAGC	2 cut(s)	19, 22
BstZI	CGGCCG	1 cut(s)	271
BsuRI	GGCC	2 cut(s)	44, 273
BtsI	GCAGTG	2 cut(s)	199, 435
BtsIMutI	CAGTG	4 cut(s)	199, 223, 249, 435
Cac8I	GCNNGC	2 cut(s)	204, 271
Cfr10I	RCCGGY	1 cut(s)	269
Cfr13I	GGNCC	2 cut(s)	101, 307
CviAII	CATG	2 cut(s)	130, 245
CviJI	RGCY	9 cut(s)	32, 44, 61, 77, 184, 202, 269, 273, 278
CviKI_1	RGCY	9 cut(s)	32, 44, 61, 77, 184, 202, 269, 273, 278
DdeI	CTNAG	2 cut(s)	187, 257
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
EaeI	YGGCCR	2 cut(s)	42, 271
EagI	CGGCCG	1 cut(s)	271
Eam1104I	CTCTTC	2 cut(s)	292, 375
EarI	CTCTTC	2 cut(s)	292, 375
EclXI	CGGCCG	1 cut(s)	271
Eco47I	GGWCC	2 cut(s)	101, 307
Eco52I	CGGCCG	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	303
FaeI	CATG	2 cut(s)	133, 248
FaiI	YATR	4 cut(s)	131, 224, 246, 416
FatI	CATG	2 cut(s)	129, 244
Fnu4HI	GCNGC	3 cut(s)	33, 36, 426
Fsp4HI	GCNGC	3 cut(s)	33, 36, 426
FspBI	CTAG	3 cut(s)	65, 78, 436
GluI	GCNGC	3 cut(s)	33, 36, 426
HaeIII	GGCC	2 cut(s)	44, 273
HapII	CCGG	1 cut(s)	270
Hin1II	CATG	2 cut(s)	133, 248
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	5 cut(s)	71, 165, 239, 300, 389
HpaII	CCGG	1 cut(s)	270
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	1 cut(s)	433
Hpy188I	TCNGA	2 cut(s)	260, 299
Hpy188III	TCNNGA	2 cut(s)	169, 382
Hpy8I	GTNNAC	1 cut(s)	433
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	1 cut(s)	354
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 203, 275
HpyF3I	CTNAG	2 cut(s)	187, 257
Hsp92II	CATG	2 cut(s)	133, 248
KroI	GCCGGC	1 cut(s)	269
KroNI	GCCGGC	1 cut(s)	271
Kzo9I	GATC	1 cut(s)	253
LpnPI	CCDG	8 cut(s)	117, 150, 229, 283, 290, 317, 338, 395
Lsp1109I	GCAGC	2 cut(s)	19, 22
MaeI	CTAG	3 cut(s)	65, 78, 436
MaeIII	GTNAC	3 cut(s)	80, 115, 247
MalI	GATC	1 cut(s)	255
MboI	GATC	1 cut(s)	253
MboII	GAAGA	4 cut(s)	279, 282, 362, 368
MluCI	AATT	1 cut(s)	355
MlyI	GAGTC	2 cut(s)	248, 294
MmeI	TCCRAC	1 cut(s)	322
MnlI	CCTC	5 cut(s)	137, 158, 321, 339, 378
MroNI	GCCGGC	1 cut(s)	269
MseI	TTAA	1 cut(s)	111
MspA1I	CMGCKG	1 cut(s)	99
MspI	CCGG	1 cut(s)	270
MspR9I	CCNGG	1 cut(s)	305
MvaI	CCWGG	1 cut(s)	305
MwoI	GCNNNNNNNGC	3 cut(s)	41, 203, 275
NaeI	GCCGGC	1 cut(s)	271
NdeII	GATC	1 cut(s)	253
NgoMIV	GCCGGC	1 cut(s)	269
NlaIII	CATG	2 cut(s)	133, 248
NlaIV	GGNNCC	1 cut(s)	309
NmeAIII	GCCGAG	1 cut(s)	299
NmuCI	GTSAC	3 cut(s)	80, 115, 247
NspV	TTCGAA	1 cut(s)	335
PdiI	GCCGGC	1 cut(s)	271
PfeI	GAWTC	3 cut(s)	71, 165, 389
PfoI	TCCNGGA	1 cut(s)	303
PkrI	GCNGC	3 cut(s)	34, 37, 427
PleI	GAGTC	2 cut(s)	247, 294
PpsI	GAGTC	2 cut(s)	247, 294
Psp6I	CCWGG	1 cut(s)	303
PspGI	CCWGG	1 cut(s)	303
PspN4I	GGNNCC	1 cut(s)	309
PspPI	GGNCC	2 cut(s)	101, 307
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	3 cut(s)	33, 36, 426
Sau3AI	GATC	1 cut(s)	253
Sau96I	GGNCC	2 cut(s)	101, 307
SchI	GAGTC	2 cut(s)	248, 294
ScrFI	CCNGG	1 cut(s)	305
SetI	ASST	8 cut(s)	34, 63, 79, 129, 150, 186, 204, 346
SfuI	TTCGAA	1 cut(s)	335
SinI	GGWCC	2 cut(s)	101, 307
Sse9I	AATT	1 cut(s)	355
SsiI	CCGC	3 cut(s)	99, 407, 425
SspMI	CTAG	3 cut(s)	65, 78, 436
StyD4I	CCNGG	1 cut(s)	303
TaqI	TCGA	1 cut(s)	335
TasI	AATT	1 cut(s)	355
TauI	GCSGC	1 cut(s)	428
TfiI	GAWTC	3 cut(s)	71, 165, 389
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	4 cut(s)	199, 223, 256, 435
TseFI	GTSAC	3 cut(s)	80, 115, 247
TseI	GCWGC	2 cut(s)	32, 35
Tsp45I	GTSAC	3 cut(s)	80, 115, 247
TspDTI	ATGAA	1 cut(s)	362
TspRI	CASTG	4 cut(s)	199, 223, 256, 435
VpaK11BI	GGWCC	2 cut(s)	101, 307
XspI	CTAG	3 cut(s)	65, 78, 436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.