Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0029634

Physical Location & Seq

Genomic Coordinates Reverse (-)

51128027 .. 51128497

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG282000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGCAGATCTTTGTGAAGACAATCACAGGGAAGACCATTACCCTTGAGGTGGAAAGCTCTGATACTGTAGACGATGTAAAGGCAAGGATTCAAGACCAAAAAATGCTGATCTTCGAGGGAAAGCAGCTTAAGGATCGCGAGGCTTTGGCAAATTATGATATCCGAAAGAATTCAACTTTGTATCTCCTCTTGGGAATGCAGATTTTCGTTAGAACTCAGACCGGGAAGAGAATCCGTCTTACGGTTGAGAGCTCTGATAAAGTTCACATGGTCAAGGATAGAATCCTAGATGAGTTGGGAATCCAAATAGAAGTGCAGCGGCTGATCTATGCTGGGAAGCAACAGGAGGATTGGCGTACCCTAGCTGATTGTAGCATCCAGAATGAATCAACCCTAGACCTTGTGCTCCTTCCCCATCCTCCTCGGAGGATGCAGATTTTTGTTCAAGCTGATCTGACAGCTACTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

156

Amino Acids

17.99

Weight (kDa)

6.74

Isoelectric Point (pI)

27.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	1 - 61	6.3e-06	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	3 - 64	2.8e-15	Ubiquitin family
Rad60-SLD	PF11976	66 - 136	1.3e-10	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	68 - 136	1e-18	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0029634)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0359171
rosa_samantha	Rh1AG282000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	69
AccII	CGCG	1 cut(s)	138
AciI	CCGC	1 cut(s)	319
AclWI	GGATC	1 cut(s)	141
AcsI	RAATTY	1 cut(s)	169
AfaI	GTAC	1 cut(s)	358
AfiI	CCNNNNNNNGG	2 cut(s)	49, 241
AflII	CTTAAG	1 cut(s)	128
AgsI	TTSAA	3 cut(s)	92, 174, 446
AluBI	AGCT	6 cut(s)	57, 127, 252, 365, 449, 461
AluI	AGCT	6 cut(s)	57, 127, 252, 365, 449, 461
Alw21I	GWGCWC	2 cut(s)	254, 408
AlwI	GGATC	1 cut(s)	141
AlwNI	CAGNNNCTG	1 cut(s)	322
ApeKI	GCWGC	2 cut(s)	124, 316
ApoI	RAATTY	1 cut(s)	169
Asp700I	GAANNNNTTC	1 cut(s)	169
AsuC2I	CCSGG	1 cut(s)	223
BanII	GRGCYC	1 cut(s)	254
BbsI	GAAGAC	2 cut(s)	23, 38
Bbv12I	GWGCWC	2 cut(s)	254, 408
BbvI	GCAGC	2 cut(s)	136, 328
BccI	CCATC	1 cut(s)	423
BcnI	CCSGG	1 cut(s)	223
BfaI	CTAG	3 cut(s)	287, 362, 395
BfmI	CTRYAG	1 cut(s)	66
BfrI	CTTAAG	1 cut(s)	128
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	3 cut(s)	125, 317, 320
BlsI	GCNGC	3 cut(s)	126, 318, 321
Bme1390I	CCNGG	1 cut(s)	223
BmrFI	CCNGG	1 cut(s)	223
BmsI	GCATC	2 cut(s)	384, 420
BpiI	GAAGAC	2 cut(s)	23, 38
BpuEI	CTTGAG	1 cut(s)	65
BpuMI	CCSGG	1 cut(s)	223
BsaJI	CCNNGG	1 cut(s)	422
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 241
BseDI	CCNNGG	1 cut(s)	422
BseGI	GGATG	3 cut(s)	375, 415, 435
BseLI	CCNNNNNNNGG	2 cut(s)	49, 241
BseMII	CTCAG	1 cut(s)	230
BseRI	GAGGAG	2 cut(s)	176, 411
BseXI	GCAGC	2 cut(s)	136, 328
BseYI	CCCAGC	1 cut(s)	332
BsgI	GTGCAG	1 cut(s)	335
Bsh1236I	CGCG	1 cut(s)	138
BsiHKAI	GWGCWC	2 cut(s)	254, 408
BsiSI	CCGG	1 cut(s)	222
BslI	CCNNNNNNNGG	2 cut(s)	49, 241
BsmI	GAATGC	1 cut(s)	201
Bsp1286I	GDGCHC	2 cut(s)	254, 408
Bsp143I	GATC	5 cut(s)	6, 108, 133, 324, 451
Bsp68I	TCGCGA	1 cut(s)	138
BspACI	CCGC	1 cut(s)	319
BspCNI	CTCAG	1 cut(s)	229
BspFNI	CGCG	1 cut(s)	138
BspPI	GGATC	1 cut(s)	141
BspTI	CTTAAG	1 cut(s)	128
BssECI	CCNNGG	1 cut(s)	422
BssMI	GATC	5 cut(s)	6, 108, 133, 324, 451
Bst4CI	ACNGT	2 cut(s)	67, 244
Bst6I	CTCTTC	1 cut(s)	221
BstAFI	CTTAAG	1 cut(s)	128
BstDEI	CTNAG	1 cut(s)	216
BstF5I	GGATG	3 cut(s)	375, 415, 435
BstFNI	CGCG	1 cut(s)	138
BstKTI	GATC	5 cut(s)	9, 111, 136, 327, 454
BstMBI	GATC	5 cut(s)	6, 108, 133, 324, 451
BstSCI	CCNGG	1 cut(s)	221
BstSFI	CTRYAG	1 cut(s)	66
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	2 cut(s)	136, 328
BstV2I	GAAGAC	2 cut(s)	23, 38
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
BtsCI	GGATG	3 cut(s)	375, 415, 435
BtuMI	TCGCGA	1 cut(s)	138
CaiI	CAGNNNCTG	1 cut(s)	322
Csp6I	GTAC	1 cut(s)	357
CviAII	CATG	1 cut(s)	268
CviJI	RGCY	8 cut(s)	57, 127, 143, 252, 322, 365, 449, 461
CviKI_1	RGCY	8 cut(s)	57, 127, 143, 252, 322, 365, 449, 461
CviQI	GTAC	1 cut(s)	357
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	5 cut(s)	8, 110, 135, 326, 453
DpnII	GATC	5 cut(s)	6, 108, 133, 324, 451
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
Ecl136II	GAGCTC	1 cut(s)	252
Eco24I	GRGCYC	1 cut(s)	254
Eco32I	GATATC	1 cut(s)	160
Eco53kI	GAGCTC	1 cut(s)	252
EcoICRI	GAGCTC	1 cut(s)	252
EcoRI	GAATTC	1 cut(s)	169
EcoRV	GATATC	1 cut(s)	160
EcoT38I	GRGCYC	1 cut(s)	254
FaeI	CATG	1 cut(s)	271
FaiI	YATR	3 cut(s)	156, 269, 330
FatI	CATG	1 cut(s)	267
FblI	GTMKAC	1 cut(s)	69
Fnu4HI	GCNGC	3 cut(s)	125, 317, 320
FokI	GGATG	3 cut(s)	362, 402, 442
FriOI	GRGCYC	1 cut(s)	254
Fsp4HI	GCNGC	3 cut(s)	125, 317, 320
FspBI	CTAG	3 cut(s)	287, 362, 395
GluI	GCNGC	3 cut(s)	125, 317, 320
GsaI	CCCAGC	1 cut(s)	336
HapII	CCGG	1 cut(s)	222
Hin1II	CATG	1 cut(s)	271
HinfI	GANTC	5 cut(s)	88, 231, 282, 300, 386
HpaII	CCGG	1 cut(s)	222
Hpy166II	GTNNAC	2 cut(s)	70, 265
Hpy188I	TCNGA	6 cut(s)	61, 164, 219, 256, 426, 456
Hpy188III	TCNNGA	3 cut(s)	92, 137, 379
Hpy8I	GTNNAC	2 cut(s)	70, 265
HpyAV	CCTTC	1 cut(s)	419
HpyCH4III	ACNGT	2 cut(s)	67, 244
HpyCH4V	TGCA	4 cut(s)	4, 199, 316, 433
HpyF3I	CTNAG	1 cut(s)	216
Hsp92II	CATG	1 cut(s)	271
Kzo9I	GATC	5 cut(s)	6, 108, 133, 324, 451
LmnI	GCTCC	1 cut(s)	411
LpnPI	CCDG	5 cut(s)	12, 235, 318, 329, 392
Lsp1109I	GCAGC	2 cut(s)	136, 328
LweI	GCATC	2 cut(s)	384, 420
MaeI	CTAG	3 cut(s)	287, 362, 395
MalI	GATC	5 cut(s)	8, 110, 135, 326, 453
MboI	GATC	5 cut(s)	6, 108, 133, 324, 451
MboII	GAAGA	4 cut(s)	28, 43, 103, 238
MflI	RGATCY	1 cut(s)	6
MhlI	GDGCHC	2 cut(s)	254, 408
MluCI	AATT	3 cut(s)	151, 169, 466
MnlI	CCTC	8 cut(s)	40, 109, 133, 197, 340, 420, 429, 432
MroXI	GAANNNNTTC	1 cut(s)	169
MseI	TTAA	1 cut(s)	129
MspA1I	CMGCKG	1 cut(s)	319
MspCI	CTTAAG	1 cut(s)	128
MspI	CCGG	1 cut(s)	222
MspR9I	CCNGG	1 cut(s)	223
Mva1269I	GAATGC	1 cut(s)	201
MvnI	CGCG	1 cut(s)	138
NciI	CCSGG	1 cut(s)	223
NdeII	GATC	5 cut(s)	6, 108, 133, 324, 451
NlaIII	CATG	1 cut(s)	271
NruI	TCGCGA	1 cut(s)	138
PctI	GAATGC	1 cut(s)	201
PdmI	GAANNNNTTC	1 cut(s)	169
PfeI	GAWTC	5 cut(s)	88, 231, 282, 300, 386
PkrI	GCNGC	3 cut(s)	126, 318, 321
Psp124BI	GAGCTC	1 cut(s)	254
PspFI	CCCAGC	1 cut(s)	332
PstNI	CAGNNNCTG	1 cut(s)	322
PsuI	RGATCY	1 cut(s)	6
RruI	TCGCGA	1 cut(s)	138
RsaI	GTAC	1 cut(s)	358
RsaNI	GTAC	1 cut(s)	357
SacI	GAGCTC	1 cut(s)	254
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	3 cut(s)	125, 317, 320
Sau3AI	GATC	5 cut(s)	6, 108, 133, 324, 451
ScrFI	CCNGG	1 cut(s)	223
SduI	GDGCHC	2 cut(s)	254, 408
SetI	ASST	8 cut(s)	51, 59, 129, 254, 367, 402, 451, 463
SfaNI	GCATC	2 cut(s)	384, 420
SfcI	CTRYAG	1 cut(s)	66
SmlI	CTYRAG	2 cut(s)	44, 128
SmoI	CTYRAG	2 cut(s)	44, 128
Sse9I	AATT	3 cut(s)	151, 169, 466
SsiI	CCGC	1 cut(s)	319
SspMI	CTAG	3 cut(s)	287, 362, 395
SstI	GAGCTC	1 cut(s)	254
StyD4I	CCNGG	1 cut(s)	221
TaaI	ACNGT	2 cut(s)	67, 244
TaqI	TCGA	1 cut(s)	114
TasI	AATT	3 cut(s)	151, 169, 466
TauI	GCSGC	1 cut(s)	322
TfiI	GAWTC	5 cut(s)	88, 231, 282, 300, 386
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TseI	GCWGC	2 cut(s)	124, 316
TspDTI	ATGAA	1 cut(s)	399
TspGWI	ACGGA	1 cut(s)	224
Vha464I	CTTAAG	1 cut(s)	128
XapI	RAATTY	1 cut(s)	169
XmiI	GTMKAC	1 cut(s)	69
XmnI	GAANNNNTTC	1 cut(s)	169
XspI	CTAG	3 cut(s)	287, 362, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.