Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0029611

Physical Location & Seq

Genomic Coordinates Reverse (-)

53035771 .. 53036790

Gene Structure 1020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG298800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGAAACCCTTCTCTTCACGCCTTCACGCACAGAAGCCGCTCTTCTGGAAACAGAGACGCACTCTTCTGCCTTTCTGGATCATTGGCATTGCCAGATCCAGTTTCTTGATGACAGGCCCAGTTCGCACCGCCGAACCAATTGACCCGAATCCAAATCCGGAGAGTCAACCTGTGGAGGAGTTCTACCGCAGTCGGGGAAAATTGTTAGAGTTTGATCTTATTGGAGGGATTCCAGAATCCTGGCCAAAGCAGCATGATTTGTATATTGTGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004017 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006082 GO:0006139 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0019752 GO:0022622 GO:0032501 GO:0032502 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0046940 GO:0048364 GO:0048367 GO:0048731 GO:0048856 GO:0050145 GO:0055086 GO:0071704 GO:0090407 GO:0099402 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

91

Amino Acids

10.67

Weight (kDa)

9.52

Isoelectric Point (pI)

62.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029611)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0361231
rosa_samantha	Rh1AG298800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	40
AccIII	TCCGGA	1 cut(s)	157
AciI	CCGC	3 cut(s)	38, 129, 187
AclWI	GGATC	2 cut(s)	86, 90
AcoI	YGGCCR	1 cut(s)	242
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	1 cut(s)	193
AjnI	CCWGG	1 cut(s)	239
Alw26I	GTCTC	1 cut(s)	49
AlwI	GGATC	2 cut(s)	86, 90
Aor13HI	TCCGGA	1 cut(s)	157
AoxI	GGCC	2 cut(s)	115, 242
ApeKI	GCWGC	1 cut(s)	250
Asp700I	GAANNNNTTC	1 cut(s)	8
AspS9I	GGNCC	1 cut(s)	116
BalI	TGGCCA	1 cut(s)	244
BbvI	GCAGC	1 cut(s)	262
BciT130I	CCWGG	1 cut(s)	241
BcoDI	GTCTC	1 cut(s)	49
BisI	GCNGC	2 cut(s)	38, 251
BlsI	GCNGC	2 cut(s)	39, 252
Bme1390I	CCNGG	1 cut(s)	241
BmgT120I	GGNCC	1 cut(s)	116
BmrFI	CCNGG	1 cut(s)	241
BmrI	ACTGGG	1 cut(s)	113
BmuI	ACTGGG	1 cut(s)	113
BplI	GAGNNNNNCTC	2 cut(s)	46, 78
BsaWI	WCCGGW	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse1I	ACTGG	2 cut(s)	99, 119
Bse3DI	GCAATG	1 cut(s)	87
BseAI	TCCGGA	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	241
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseMI	GCAATG	1 cut(s)	87
BseNI	ACTGG	2 cut(s)	99, 119
BseRI	GAGGAG	1 cut(s)	191
BseXI	GCAGC	1 cut(s)	262
BshFI	GGCC	2 cut(s)	117, 244
BsiSI	CCGG	1 cut(s)	158
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	49
BsmBI	CGTCTC	1 cut(s)	49
BsnI	GGCC	2 cut(s)	117, 244
Bsp13I	TCCGGA	1 cut(s)	157
Bsp143I	GATC	3 cut(s)	78, 95, 214
BspACI	CCGC	3 cut(s)	38, 129, 187
BspANI	GGCC	2 cut(s)	117, 244
BspEI	TCCGGA	1 cut(s)	157
BspPI	GGATC	2 cut(s)	86, 90
BspQI	GCTCTTC	1 cut(s)	47
BsrBI	CCGCTC	1 cut(s)	40
BsrDI	GCAATG	1 cut(s)	87
BsrI	ACTGG	2 cut(s)	99, 119
BssMI	GATC	3 cut(s)	78, 95, 214
Bst2UI	CCWGG	1 cut(s)	241
Bst6I	CTCTTC	3 cut(s)	19, 47, 69
BstKTI	GATC	3 cut(s)	81, 98, 217
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	3 cut(s)	78, 95, 214
BstMWI	GCNNNNNNNGC	2 cut(s)	123, 250
BstNI	CCWGG	1 cut(s)	241
BstSCI	CCNGG	1 cut(s)	239
BstV1I	GCAGC	1 cut(s)	262
BstX2I	RGATCY	1 cut(s)	95
BstXI	CCANNNNNNTGG	1 cut(s)	240
BstYI	RGATCY	1 cut(s)	95
BsuRI	GGCC	2 cut(s)	117, 244
Cfr13I	GGNCC	1 cut(s)	116
CseI	GACGC	1 cut(s)	66
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	1 cut(s)	254
CviJI	RGCY	3 cut(s)	37, 117, 244
CviKI_1	RGCY	3 cut(s)	37, 117, 244
CviQI	GTAC	1 cut(s)	271
DpnI	GATC	3 cut(s)	80, 97, 216
DpnII	GATC	3 cut(s)	78, 95, 214
EaeI	YGGCCR	1 cut(s)	242
Eam1104I	CTCTTC	3 cut(s)	19, 47, 69
EarI	CTCTTC	3 cut(s)	19, 47, 69
EcoRII	CCWGG	1 cut(s)	239
Esp3I	CGTCTC	1 cut(s)	49
FaeI	CATG	1 cut(s)	257
FaiI	YATR	2 cut(s)	255, 264
FalI	AAGNNNNNCTT	2 cut(s)	26, 58
FatI	CATG	1 cut(s)	253
Fnu4HI	GCNGC	2 cut(s)	38, 251
Fsp4HI	GCNGC	2 cut(s)	38, 251
GluI	GCNGC	2 cut(s)	38, 251
HaeIII	GGCC	2 cut(s)	117, 244
HapII	CCGG	1 cut(s)	158
HgaI	GACGC	1 cut(s)	66
Hin1II	CATG	1 cut(s)	257
HincII	GTYRAC	1 cut(s)	167
HindII	GTYRAC	1 cut(s)	167
HinfI	GANTC	4 cut(s)	148, 163, 229, 236
HpaII	CCGG	1 cut(s)	158
Hpy166II	GTNNAC	2 cut(s)	167, 271
Hpy188III	TCNNGA	5 cut(s)	46, 76, 106, 158, 233
Hpy8I	GTNNAC	2 cut(s)	167, 271
HpyAV	CCTTC	2 cut(s)	19, 32
HpyF10VI	GCNNNNNNNGC	2 cut(s)	123, 250
Hsp92II	CATG	1 cut(s)	257
Kpn2I	TCCGGA	1 cut(s)	157
Kzo9I	GATC	3 cut(s)	78, 95, 214
LguI	GCTCTTC	1 cut(s)	47
Lsp1109I	GCAGC	1 cut(s)	262
MalI	GATC	3 cut(s)	80, 97, 216
MbiI	CCGCTC	1 cut(s)	40
MboI	GATC	3 cut(s)	78, 95, 214
MboII	GAAGA	3 cut(s)	6, 34, 56
MfeI	CAATTG	1 cut(s)	138
MflI	RGATCY	1 cut(s)	95
MlsI	TGGCCA	1 cut(s)	244
MluCI	AATT	2 cut(s)	138, 200
MluNI	TGGCCA	1 cut(s)	244
MlyI	GAGTC	1 cut(s)	172
MnlI	CCTC	2 cut(s)	169, 218
Mox20I	TGGCCA	1 cut(s)	244
MroI	TCCGGA	1 cut(s)	157
MroXI	GAANNNNTTC	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	244
Msp20I	TGGCCA	1 cut(s)	244
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	241
MunI	CAATTG	1 cut(s)	138
MvaI	CCWGG	1 cut(s)	241
MwoI	GCNNNNNNNGC	2 cut(s)	123, 250
NdeII	GATC	3 cut(s)	78, 95, 214
NlaIII	CATG	1 cut(s)	257
PciSI	GCTCTTC	1 cut(s)	47
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	3 cut(s)	148, 229, 236
PkrI	GCNGC	2 cut(s)	39, 252
PleI	GAGTC	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	239
PspGI	CCWGG	1 cut(s)	239
PspPI	GGNCC	1 cut(s)	116
PsuI	RGATCY	1 cut(s)	95
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
SapI	GCTCTTC	1 cut(s)	47
SatI	GCNGC	2 cut(s)	38, 251
Sau3AI	GATC	3 cut(s)	78, 95, 214
Sau96I	GGNCC	1 cut(s)	116
SchI	GAGTC	1 cut(s)	172
ScrFI	CCNGG	1 cut(s)	241
SetI	ASST	1 cut(s)	172
Sse9I	AATT	2 cut(s)	138, 200
SsiI	CCGC	3 cut(s)	38, 129, 187
StyD4I	CCNGG	1 cut(s)	239
TasI	AATT	2 cut(s)	138, 200
TatI	WGTACW	1 cut(s)	270
TauI	GCSGC	1 cut(s)	40
TfiI	GAWTC	3 cut(s)	148, 229, 236
TseI	GCWGC	1 cut(s)	250
TspDTI	ATGAA	1 cut(s)	17
XmnI	GAANNNNTTC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.