Rh1AG410100

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0025503
Physical Location & Seq
Forward (+)
64073601 .. 64074011
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG410100.1

Sequence Viewer

Length: 411 bp
ATGGTGAAGTATGTGGAAGAAAATCGTGTTGGTGTTGATGTTTACTTGGGGAATACGATGATAGATATGTATGGACGGCGTGGTTTGCCGCATTTGGCTCGGGAATTGTTTGATCGGATGCGTGAGAGGAATGTAGTATCATGGAAAGCCATGATCAATGGATATGCGAAAGTGGGGAACTTGGTGGATTCAAGAAAGCTTTTTGATGGGATGCCGAATAGGGATGTGATCTCCTGGACGTCCTTGATCACCGGGTATTCTCAAGCTAACCATCATGCTGAGGCGGTGAGTCTTTTTGGTGAAATGATGGCAGCTAATGTGAGGCCGGATAAAGTGACAGTGGCTAGTGTGCTTTCTGCTTGTGCGCATGTGGGATGGATAAGAAAGACTCGGTGTCATGGACTTCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

136

Amino Acids

15.38

Weight (kDa)

9.64

Isoelectric Point (pI)

22.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 18 - 45 5.8e-07 PPR repeat
PPR PF01535 46 - 75 8.8e-06 PPR repeat
PPR_2 PF13041 74 - 123 7.3e-12 PPR repeat family
PPR PF01535 77 - 105 9.2e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025503)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001198.1_g000014
rosa_samantha Rh1AG409500 Rh1AG410100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 242
Acc16I TGCGCA 1 cut(s) 366
AciI CCGC 2 cut(s) 89, 284
AcyI GRCGYC 1 cut(s) 239
AgsI TTSAA 1 cut(s) 192
AhdI GACNNNNNGTC 1 cut(s) 393
AjnI CCWGG 1 cut(s) 233
AjuI GAANNNNNNNTTGG 2 cut(s) 12, 44
AluBI AGCT 3 cut(s) 199, 266, 314
AluI AGCT 3 cut(s) 199, 266, 314
Ama87I CYCGRG 1 cut(s) 99
AoxI GGCC 1 cut(s) 323
ApeKI GCWGC 1 cut(s) 311
AspLEI GCGC 1 cut(s) 367
AsuC2I CCSGG 1 cut(s) 253
AsuHPI GGTGA 4 cut(s) 16, 241, 298, 311
AvaI CYCGRG 1 cut(s) 99
BbvCI CCTCAGC 1 cut(s) 279
BbvI GCAGC 1 cut(s) 323
BccI CCATC 4 cut(s) 200, 279, 301, 369
BceAI ACGGC 1 cut(s) 92
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BciT130I CCWGG 1 cut(s) 235
BclI TGATCA 2 cut(s) 153, 246
BcnI CCSGG 1 cut(s) 253
BfaI CTAG 1 cut(s) 345
BisI GCNGC 2 cut(s) 89, 312
BlsI GCNGC 2 cut(s) 90, 313
Bme1390I CCNGG 2 cut(s) 235, 253
BmeRI GACNNNNNGTC 1 cut(s) 393
BmeT110I CYCGRG 1 cut(s) 99
BmrFI CCNGG 2 cut(s) 235, 253
BmsI GCATC 2 cut(s) 108, 201
Bpu10I CCTNAGC 1 cut(s) 279
BpuEI CTTGAG 1 cut(s) 246
BpuMI CCSGG 1 cut(s) 253
BsaHI GRCGYC 1 cut(s) 239
BseBI CCWGG 1 cut(s) 235
BseGI GGATG 4 cut(s) 123, 216, 229, 380
BseMII CTCAG 1 cut(s) 270
BseXI GCAGC 1 cut(s) 323
BshFI GGCC 1 cut(s) 325
BsiHKCI CYCGRG 1 cut(s) 99
BsiSI CCGG 2 cut(s) 252, 326
BsnI GGCC 1 cut(s) 325
BsoBI CYCGRG 1 cut(s) 99
Bsp143I GATC 4 cut(s) 112, 153, 228, 246
BspACI CCGC 2 cut(s) 89, 284
BspANI GGCC 1 cut(s) 325
BspCNI CTCAG 1 cut(s) 271
BssMI GATC 4 cut(s) 112, 153, 228, 246
BssNI GRCGYC 1 cut(s) 239
Bst2UI CCWGG 1 cut(s) 235
Bst4CI ACNGT 1 cut(s) 340
BstACI GRCGYC 1 cut(s) 239
BstDEI CTNAG 1 cut(s) 279
BstF5I GGATG 4 cut(s) 123, 216, 229, 380
BstHHI GCGC 1 cut(s) 367
BstKTI GATC 4 cut(s) 115, 156, 231, 249
BstMBI GATC 4 cut(s) 112, 153, 228, 246
BstMWI GCNNNNNNNGC 1 cut(s) 85
BstNI CCWGG 1 cut(s) 235
BstNSI RCATGY 1 cut(s) 371
BstSCI CCNGG 2 cut(s) 233, 251
BstV1I GCAGC 1 cut(s) 323
BsuRI GGCC 1 cut(s) 325
BtsCI GGATG 4 cut(s) 123, 216, 229, 380
BtsIMutI CAGTG 1 cut(s) 345
CfoI GCGC 1 cut(s) 367
CviAII CATG 5 cut(s) 141, 151, 275, 368, 398
CviJI RGCY 7 cut(s) 98, 149, 199, 266, 314, 325, 344
CviKI_1 RGCY 7 cut(s) 98, 149, 199, 266, 314, 325, 344
DdeI CTNAG 1 cut(s) 279
DpnI GATC 4 cut(s) 114, 155, 230, 248
DpnII GATC 4 cut(s) 112, 153, 228, 246
DriI GACNNNNNGTC 1 cut(s) 393
Eam1105I GACNNNNNGTC 1 cut(s) 393
Eco88I CYCGRG 1 cut(s) 99
EcoRII CCWGG 1 cut(s) 233
FaeI CATG 5 cut(s) 144, 154, 278, 371, 401
FaiI YATR 9 cut(s) 12, 68, 72, 142, 152, 165, 276, 369, 399
FatI CATG 5 cut(s) 140, 150, 274, 367, 397
FbaI TGATCA 2 cut(s) 153, 246
Fnu4HI GCNGC 2 cut(s) 89, 312
FokI GGATG 4 cut(s) 130, 223, 236, 387
Fsp4HI GCNGC 2 cut(s) 89, 312
FspAI RTGCGCAY 1 cut(s) 366
FspBI CTAG 1 cut(s) 345
FspI TGCGCA 1 cut(s) 366
GlaI GCGC 1 cut(s) 366
GluI GCNGC 2 cut(s) 89, 312
HaeIII GGCC 1 cut(s) 325
HapII CCGG 2 cut(s) 252, 326
HhaI GCGC 1 cut(s) 367
Hin1I GRCGYC 1 cut(s) 239
Hin1II CATG 5 cut(s) 144, 154, 278, 371, 401
Hin6I GCGC 1 cut(s) 365
HinP1I GCGC 1 cut(s) 365
HindIII AAGCTT 1 cut(s) 197
HinfI GANTC 3 cut(s) 188, 289, 388
HpaII CCGG 2 cut(s) 252, 326
HphI GGTGA 4 cut(s) 16, 241, 298, 311
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 1 cut(s) 117
Hpy188III TCNNGA 2 cut(s) 101, 192
Hpy8I GTNNAC 1 cut(s) 43
HpyCH4III ACNGT 1 cut(s) 340
HpyCH4IV ACGT 1 cut(s) 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 85
HpyF3I CTNAG 1 cut(s) 279
HpySE526I ACGT 1 cut(s) 239
Hsp92I GRCGYC 1 cut(s) 239
Hsp92II CATG 5 cut(s) 144, 154, 278, 371, 401
HspAI GCGC 1 cut(s) 365
Ksp22I TGATCA 2 cut(s) 153, 246
Kzo9I GATC 4 cut(s) 112, 153, 228, 246
LpnPI CCDG 4 cut(s) 220, 247, 265, 339
Lsp1109I GCAGC 1 cut(s) 323
LweI GCATC 2 cut(s) 108, 201
MaeI CTAG 1 cut(s) 345
MaeII ACGT 1 cut(s) 239
MaeIII GTNAC 1 cut(s) 334
MalI GATC 4 cut(s) 114, 155, 230, 248
MboI GATC 4 cut(s) 112, 153, 228, 246
MboII GAAGA 1 cut(s) 29
MluCI AATT 1 cut(s) 104
MlyI GAGTC 2 cut(s) 298, 382
MnlI CCTC 3 cut(s) 120, 274, 315
MspI CCGG 2 cut(s) 252, 326
MspR9I CCNGG 2 cut(s) 235, 253
MvaI CCWGG 1 cut(s) 235
MwoI GCNNNNNNNGC 1 cut(s) 85
NciI CCSGG 1 cut(s) 253
NdeII GATC 4 cut(s) 112, 153, 228, 246
NlaIII CATG 5 cut(s) 144, 154, 278, 371, 401
NmuCI GTSAC 1 cut(s) 334
NsbI TGCGCA 1 cut(s) 366
NspI RCATGY 1 cut(s) 371
PfeI GAWTC 1 cut(s) 188
PfoI TCCNGGA 1 cut(s) 233
PkrI GCNGC 2 cut(s) 90, 313
PleI GAGTC 2 cut(s) 297, 382
PpsI GAGTC 2 cut(s) 297, 382
Psp6I CCWGG 1 cut(s) 233
PspGI CCWGG 1 cut(s) 233
SatI GCNGC 2 cut(s) 89, 312
Sau3AI GATC 4 cut(s) 112, 153, 228, 246
SchI GAGTC 2 cut(s) 298, 382
ScrFI CCNGG 2 cut(s) 235, 253
SetI ASST 4 cut(s) 201, 242, 268, 316
SfaNI GCATC 2 cut(s) 108, 201
SmlI CTYRAG 1 cut(s) 261
SmoI CTYRAG 1 cut(s) 261
Sse9I AATT 1 cut(s) 104
SsiI CCGC 2 cut(s) 89, 284
SspMI CTAG 1 cut(s) 345
StyD4I CCNGG 2 cut(s) 233, 251
TaaI ACNGT 1 cut(s) 340
TaiI ACGT 1 cut(s) 242
TasI AATT 1 cut(s) 104
TauI GCSGC 1 cut(s) 91
TfiI GAWTC 1 cut(s) 188
TscAI CASTG 1 cut(s) 345
TseFI GTSAC 1 cut(s) 334
TseI GCWGC 1 cut(s) 311
Tsp45I GTSAC 1 cut(s) 334
TspRI CASTG 1 cut(s) 345
XceI RCATGY 1 cut(s) 371
XspI CTAG 1 cut(s) 345
ZraI GACGTC 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.