Rh1AG429600

Belongs to the glycosyl hydrolase 28 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0030097
Physical Location & Seq
Forward (+)
65677269 .. 65678774
1506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG429600.1

Sequence Viewer

Length: 693 bp
ATGGACTTAAAATCATCAGCAATGTCTCATGCTGCTGCAACCATTGTTATATTTGGATTACTATTCCTACAAGCGGCAGAATGTAGAAACGTGAAGAAGATTAAGGATGGGGTTACGTACTCTGCCATCAAATGCCGGAAGCACAGTGCTCTTTTGACTGATTTCGGTGCCGTTGGCGATGGAAAAACATTAAACACAAAGGCGTTCAAAGCTGCAGTTGATCATCTAAGCAAGTCCGCATCTAAAGGTGGAGCACAGCTCATTGTGCCTCCCGGGAAATGGCTTACCGGGAGCTTCAACCTCACTAGCCATTTTACCCTTTTCCTCCATAAGGATGCTATAATTCTTGGGACTCAGGATGAGTCAGAGTGGCCTATTCTTCCGGTACTGCCTTCATATGGGAGAGGTAGAGATGCCCCCGATGGAAGGTTTAGCAGTCTCATCTTTGGAACAAACCTAACCGACATTATAATTACTGGTAACAATGGCACCCTTGATGGCCAAGGTGCTCCTTGGTGGGACAAGTTCCACAAGGGTCTTTTGAATGTGACTCGTCCATACTTGATTGAGATTATGTACTCTAATCACATCCAAATCTCTAATCTCACTCTGATCAATTCTCCATCTTGGCATGTCCACCCCATTTACAGCAGCTATATAACAATCCAAGGTTACTATCCTTGCACCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

230

Amino Acids

25.17

Weight (kDa)

9.07

Isoelectric Point (pI)

29.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 145 - 222 2.7e-07 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030097)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0414921
rosa_samantha Rh1AG429600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 470
AccB1I GGYRCC 2 cut(s) 167, 488
AciI CCGC 2 cut(s) 74, 237
AcoI YGGCCR 1 cut(s) 499
AfaI GTAC 3 cut(s) 119, 387, 578
AfiI CCNNNNNNNGG 5 cut(s) 73, 279, 331, 398, 426
AgsI TTSAA 3 cut(s) 208, 298, 544
AluBI AGCT 4 cut(s) 212, 259, 294, 654
AluI AGCT 4 cut(s) 212, 259, 294, 654
Alw21I GWGCWC 3 cut(s) 151, 256, 511
Alw26I GTCTC 2 cut(s) 30, 443
Ama87I CYCGRG 1 cut(s) 272
AoxI GGCC 2 cut(s) 371, 499
ApeKI GCWGC 4 cut(s) 32, 35, 212, 651
AsuC2I CCSGG 3 cut(s) 273, 274, 289
AvaI CYCGRG 1 cut(s) 272
BalI TGGCCA 1 cut(s) 501
BanI GGYRCC 2 cut(s) 167, 488
Bbv12I GWGCWC 3 cut(s) 151, 256, 511
BbvI GCAGC 4 cut(s) 19, 22, 199, 663
BccI CCATC 6 cut(s) 101, 134, 173, 416, 491, 631
BceAI ACGGC 1 cut(s) 155
BclI TGATCA 2 cut(s) 220, 612
BcnI CCSGG 3 cut(s) 273, 274, 289
BcoDI GTCTC 2 cut(s) 30, 443
BfaI CTAG 1 cut(s) 306
BfmI CTRYAG 1 cut(s) 213
BisI GCNGC 5 cut(s) 33, 36, 75, 213, 652
BlsI GCNGC 5 cut(s) 34, 37, 76, 214, 653
Bme1390I CCNGG 3 cut(s) 273, 274, 289
BmeT110I CYCGRG 1 cut(s) 272
BmiI GGNNCC 2 cut(s) 169, 490
BmrFI CCNGG 3 cut(s) 273, 274, 289
BmsI GCATC 3 cut(s) 248, 325, 403
BplI GAGNNNNNCTC 2 cut(s) 243, 275
BpuMI CCSGG 3 cut(s) 273, 274, 289
BsaAI YACGTR 1 cut(s) 117
BsaJI CCNNGG 4 cut(s) 272, 502, 512, 667
BsaWI WCCGGW 1 cut(s) 382
Bsc4I CCNNNNNNNGG 5 cut(s) 73, 279, 331, 398, 426
Bse1I ACTGG 2 cut(s) 481, 687
Bse3DI GCAATG 1 cut(s) 27
BseDI CCNNGG 4 cut(s) 272, 502, 512, 667
BseGI GGATG 4 cut(s) 112, 340, 364, 588
BseLI CCNNNNNNNGG 5 cut(s) 73, 279, 331, 398, 426
BseMI GCAATG 1 cut(s) 27
BseMII CTCAG 1 cut(s) 368
BseNI ACTGG 2 cut(s) 481, 687
BseXI GCAGC 4 cut(s) 19, 22, 199, 663
BshFI GGCC 2 cut(s) 373, 501
BshNI GGYRCC 2 cut(s) 167, 488
BsiHKAI GWGCWC 3 cut(s) 151, 256, 511
BsiHKCI CYCGRG 1 cut(s) 272
BsiSI CCGG 4 cut(s) 136, 273, 288, 383
BslFI GGGAC 2 cut(s) 364, 533
BslI CCNNNNNNNGG 5 cut(s) 73, 279, 331, 398, 426
BsmAI GTCTC 2 cut(s) 30, 443
BsmFI GGGAC 2 cut(s) 364, 533
BsnI GGCC 2 cut(s) 373, 501
BsoBI CYCGRG 1 cut(s) 272
Bsp1286I GDGCHC 3 cut(s) 151, 256, 511
Bsp143I GATC 2 cut(s) 220, 612
BspACI CCGC 2 cut(s) 74, 237
BspANI GGCC 2 cut(s) 373, 501
BspCNI CTCAG 1 cut(s) 367
BspLI GGNNCC 2 cut(s) 169, 490
BspMAI CTGCAG 1 cut(s) 217
BspT107I GGYRCC 2 cut(s) 167, 488
BsrDI GCAATG 1 cut(s) 27
BsrI ACTGG 2 cut(s) 481, 687
BssECI CCNNGG 4 cut(s) 272, 502, 512, 667
BssMI GATC 2 cut(s) 220, 612
BssT1I CCWWGG 3 cut(s) 502, 512, 667
Bst4CI ACNGT 1 cut(s) 146
BstBAI YACGTR 1 cut(s) 117
BstDEI CTNAG 2 cut(s) 227, 354
BstENI CCTNNNNNAGG 1 cut(s) 329
BstF5I GGATG 4 cut(s) 112, 340, 364, 588
BstKTI GATC 2 cut(s) 223, 615
BstMAI GTCTC 2 cut(s) 30, 443
BstMBI GATC 2 cut(s) 220, 612
BstMWI GCNNNNNNNGC 2 cut(s) 209, 265
BstNSI RCATGY 1 cut(s) 635
BstSCI CCNGG 3 cut(s) 271, 272, 287
BstSFI CTRYAG 1 cut(s) 213
BstSNI TACGTA 1 cut(s) 117
BstV1I GCAGC 4 cut(s) 19, 22, 199, 663
BsuRI GGCC 2 cut(s) 373, 501
BtgZI GCGATG 1 cut(s) 192
BtsCI GGATG 4 cut(s) 112, 340, 364, 588
BtsIMutI CAGTG 1 cut(s) 151
Cfr9I CCCGGG 1 cut(s) 272
Csp6I GTAC 3 cut(s) 118, 386, 577
CviAII CATG 2 cut(s) 29, 632
CviJI RGCY 8 cut(s) 212, 259, 283, 294, 309, 373, 501, 654
CviKI_1 RGCY 8 cut(s) 212, 259, 283, 294, 309, 373, 501, 654
CviQI GTAC 3 cut(s) 118, 386, 577
DdeI CTNAG 2 cut(s) 227, 354
DpnI GATC 2 cut(s) 222, 614
DpnII GATC 2 cut(s) 220, 612
EaeI YGGCCR 1 cut(s) 499
Eco105I TACGTA 1 cut(s) 117
Eco130I CCWWGG 3 cut(s) 502, 512, 667
Eco88I CYCGRG 1 cut(s) 272
EcoNI CCTNNNNNAGG 1 cut(s) 329
EcoT14I CCWWGG 3 cut(s) 502, 512, 667
ErhI CCWWGG 3 cut(s) 502, 512, 667
FaeI CATG 2 cut(s) 32, 635
FaqI GGGAC 2 cut(s) 364, 533
FatI CATG 2 cut(s) 28, 631
FauNDI CATATG 1 cut(s) 397
FbaI TGATCA 2 cut(s) 220, 612
Fnu4HI GCNGC 5 cut(s) 33, 36, 75, 213, 652
FokI GGATG 4 cut(s) 119, 347, 371, 575
Fsp4HI GCNGC 5 cut(s) 33, 36, 75, 213, 652
FspBI CTAG 1 cut(s) 306
GluI GCNGC 5 cut(s) 33, 36, 75, 213, 652
HaeIII GGCC 2 cut(s) 373, 501
HapII CCGG 4 cut(s) 136, 273, 288, 383
Hin1II CATG 2 cut(s) 32, 635
HinfI GANTC 3 cut(s) 352, 362, 550
HpaII CCGG 4 cut(s) 136, 273, 288, 383
Hpy166II GTNNAC 1 cut(s) 637
Hpy188I TCNGA 2 cut(s) 367, 612
Hpy188III TCNNGA 1 cut(s) 356
Hpy8I GTNNAC 1 cut(s) 637
HpyAV CCTTC 2 cut(s) 402, 420
HpyCH4III ACNGT 1 cut(s) 146
HpyCH4IV ACGT 2 cut(s) 90, 116
HpyCH4V TGCA 3 cut(s) 38, 215, 684
HpyF10VI GCNNNNNNNGC 2 cut(s) 209, 265
HpyF3I CTNAG 2 cut(s) 227, 354
HpySE526I ACGT 2 cut(s) 90, 116
Hsp92II CATG 2 cut(s) 32, 635
Ksp22I TGATCA 2 cut(s) 220, 612
Kzo9I GATC 2 cut(s) 220, 612
LmnI GCTCC 3 cut(s) 251, 291, 514
LpnPI CCDG 6 cut(s) 149, 286, 301, 341, 396, 462
Lsp1109I GCAGC 4 cut(s) 19, 22, 199, 663
LweI GCATC 3 cut(s) 248, 325, 403
MaeI CTAG 1 cut(s) 306
MaeII ACGT 2 cut(s) 90, 116
MaeIII GTNAC 4 cut(s) 112, 479, 547, 671
MalI GATC 2 cut(s) 222, 614
MboI GATC 2 cut(s) 220, 612
MboII GAAGA 3 cut(s) 106, 109, 371
MhlI GDGCHC 3 cut(s) 151, 256, 511
MlsI TGGCCA 1 cut(s) 501
MluCI AATT 3 cut(s) 342, 471, 616
MluNI TGGCCA 1 cut(s) 501
MlyI GAGTC 3 cut(s) 346, 371, 544
MnlI CCTC 4 cut(s) 279, 311, 335, 398
Mox20I TGGCCA 1 cut(s) 501
MscI TGGCCA 1 cut(s) 501
MseI TTAA 4 cut(s) 8, 102, 191, 691
MslI CAYNNNNRTG 1 cut(s) 333
Msp20I TGGCCA 1 cut(s) 501
MspI CCGG 4 cut(s) 136, 273, 288, 383
MspR9I CCNGG 3 cut(s) 273, 274, 289
MwoI GCNNNNNNNGC 2 cut(s) 209, 265
NciI CCSGG 3 cut(s) 273, 274, 289
NdeI CATATG 1 cut(s) 397
NdeII GATC 2 cut(s) 220, 612
NlaIII CATG 2 cut(s) 32, 635
NlaIV GGNNCC 2 cut(s) 169, 490
NmuCI GTSAC 1 cut(s) 547
NspI RCATGY 1 cut(s) 635
PkrI GCNGC 5 cut(s) 34, 37, 76, 214, 653
PleI GAGTC 3 cut(s) 346, 370, 544
PpsI GAGTC 3 cut(s) 346, 370, 544
Ppu21I YACGTR 1 cut(s) 117
PsiI TTATAA 1 cut(s) 470
PspN4I GGNNCC 2 cut(s) 169, 490
PstI CTGCAG 1 cut(s) 217
RsaI GTAC 3 cut(s) 119, 387, 578
RsaNI GTAC 3 cut(s) 118, 386, 577
RseI CAYNNNNRTG 1 cut(s) 333
SaqAI TTAA 4 cut(s) 8, 102, 191, 691
SatI GCNGC 5 cut(s) 33, 36, 75, 213, 652
Sau3AI GATC 2 cut(s) 220, 612
SchI GAGTC 3 cut(s) 346, 371, 544
ScrFI CCNGG 3 cut(s) 273, 274, 289
SduI GDGCHC 3 cut(s) 151, 256, 511
SfaNI GCATC 3 cut(s) 248, 325, 403
SfcI CTRYAG 1 cut(s) 213
SmaI CCCGGG 1 cut(s) 274
SmiMI CAYNNNNRTG 1 cut(s) 333
SnaBI TACGTA 1 cut(s) 117
Sse9I AATT 3 cut(s) 342, 471, 616
SsiI CCGC 2 cut(s) 74, 237
SspMI CTAG 1 cut(s) 306
StyD4I CCNGG 3 cut(s) 271, 272, 287
StyI CCWWGG 3 cut(s) 502, 512, 667
TaaI ACNGT 1 cut(s) 146
TaiI ACGT 2 cut(s) 93, 119
TasI AATT 3 cut(s) 342, 471, 616
TatI WGTACW 1 cut(s) 576
TauI GCSGC 1 cut(s) 77
Tru1I TTAA 4 cut(s) 8, 102, 191, 691
Tru9I TTAA 4 cut(s) 8, 102, 191, 691
TscAI CASTG 1 cut(s) 151
TseFI GTSAC 1 cut(s) 547
TseI GCWGC 4 cut(s) 32, 35, 212, 651
Tsp45I GTSAC 1 cut(s) 547
TspDTI ATGAA 1 cut(s) 384
TspMI CCCGGG 1 cut(s) 272
TspRI CASTG 1 cut(s) 151
XagI CCTNNNNNAGG 1 cut(s) 329
XceI RCATGY 1 cut(s) 635
XmaI CCCGGG 1 cut(s) 272
XspI CTAG 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.