PAN-like domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0005601 |
| rosa_samantha | Rh1BG035500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 108 |
| AarI | CACCTGC | 1 cut(s) | 274 |
| Acc36I | ACCTGC | 1 cut(s) | 274 |
| AcoI | YGGCCR | 1 cut(s) | 260 |
| AcsI | RAATTY | 1 cut(s) | 40 |
| AcuI | CTGAAG | 3 cut(s) | 62, 120, 169 |
| AfeI | AGCGCT | 1 cut(s) | 34 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 283 |
| AjnI | CCWGG | 1 cut(s) | 157 |
| AluBI | AGCT | 1 cut(s) | 72 |
| AluI | AGCT | 1 cut(s) | 72 |
| Alw26I | GTCTC | 1 cut(s) | 157 |
| Aor51HI | AGCGCT | 1 cut(s) | 34 |
| AoxI | GGCC | 1 cut(s) | 260 |
| ApoI | RAATTY | 1 cut(s) | 40 |
| AspLEI | GCGC | 2 cut(s) | 35, 136 |
| BalI | TGGCCA | 1 cut(s) | 262 |
| BciT130I | CCWGG | 1 cut(s) | 159 |
| BcoDI | GTCTC | 1 cut(s) | 157 |
| BfaI | CTAG | 2 cut(s) | 149, 302 |
| BfoI | RGCGCY | 1 cut(s) | 36 |
| BfuAI | ACCTGC | 1 cut(s) | 274 |
| Bme1390I | CCNGG | 1 cut(s) | 159 |
| BmrFI | CCNGG | 1 cut(s) | 159 |
| BsaJI | CCNNGG | 3 cut(s) | 157, 241, 296 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 283 |
| BseBI | CCWGG | 1 cut(s) | 159 |
| BseDI | CCNNGG | 3 cut(s) | 157, 241, 296 |
| BseGI | GGATG | 1 cut(s) | 44 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 283 |
| BseYI | CCCAGC | 1 cut(s) | 123 |
| BsgI | GTGCAG | 1 cut(s) | 308 |
| BshFI | GGCC | 1 cut(s) | 262 |
| BslFI | GGGAC | 1 cut(s) | 153 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 283 |
| BsmAI | GTCTC | 1 cut(s) | 157 |
| BsmFI | GGGAC | 1 cut(s) | 153 |
| BsnI | GGCC | 1 cut(s) | 262 |
| BspANI | GGCC | 1 cut(s) | 262 |
| BspMI | ACCTGC | 1 cut(s) | 274 |
| BssECI | CCNNGG | 3 cut(s) | 157, 241, 296 |
| BssT1I | CCWWGG | 2 cut(s) | 241, 296 |
| Bst2UI | CCWGG | 1 cut(s) | 159 |
| Bst6I | CTCTTC | 1 cut(s) | 59 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 281 |
| BstF5I | GGATG | 1 cut(s) | 44 |
| BstH2I | RGCGCY | 1 cut(s) | 36 |
| BstHHI | GCGC | 2 cut(s) | 35, 136 |
| BstMAI | GTCTC | 1 cut(s) | 157 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 133 |
| BstNI | CCWGG | 1 cut(s) | 159 |
| BstSCI | CCNGG | 1 cut(s) | 157 |
| BsuRI | GGCC | 1 cut(s) | 262 |
| BtsCI | GGATG | 1 cut(s) | 44 |
| BveI | ACCTGC | 1 cut(s) | 274 |
| CfoI | GCGC | 2 cut(s) | 35, 136 |
| CviJI | RGCY | 7 cut(s) | 72, 127, 180, 219, 262, 276, 301 |
| CviKI_1 | RGCY | 7 cut(s) | 72, 127, 180, 219, 262, 276, 301 |
| DraI | TTTAAA | 1 cut(s) | 39 |
| EaeI | YGGCCR | 1 cut(s) | 260 |
| Eam1104I | CTCTTC | 1 cut(s) | 59 |
| EarI | CTCTTC | 1 cut(s) | 59 |
| Eco130I | CCWWGG | 2 cut(s) | 241, 296 |
| Eco47III | AGCGCT | 1 cut(s) | 34 |
| Eco57I | CTGAAG | 3 cut(s) | 62, 120, 169 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 281 |
| EcoRII | CCWGG | 1 cut(s) | 157 |
| EcoT14I | CCWWGG | 2 cut(s) | 241, 296 |
| ErhI | CCWWGG | 2 cut(s) | 241, 296 |
| FaiI | YATR | 5 cut(s) | 108, 113, 222, 235, 255 |
| FaqI | GGGAC | 1 cut(s) | 153 |
| FokI | GGATG | 1 cut(s) | 31 |
| FspBI | CTAG | 2 cut(s) | 149, 302 |
| GlaI | GCGC | 2 cut(s) | 34, 135 |
| GsaI | CCCAGC | 1 cut(s) | 127 |
| HaeII | RGCGCY | 1 cut(s) | 36 |
| HaeIII | GGCC | 1 cut(s) | 262 |
| HhaI | GCGC | 2 cut(s) | 35, 136 |
| Hin6I | GCGC | 2 cut(s) | 33, 134 |
| HinP1I | GCGC | 2 cut(s) | 33, 134 |
| HincII | GTYRAC | 1 cut(s) | 205 |
| HindII | GTYRAC | 1 cut(s) | 205 |
| HpaI | GTTAAC | 1 cut(s) | 205 |
| Hpy166II | GTNNAC | 1 cut(s) | 205 |
| Hpy8I | GTNNAC | 1 cut(s) | 205 |
| HpyAV | CCTTC | 2 cut(s) | 58, 68 |
| HpyCH4V | TGCA | 2 cut(s) | 283, 289 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 133 |
| HspAI | GCGC | 2 cut(s) | 33, 134 |
| KspAI | GTTAAC | 1 cut(s) | 205 |
| LpnPI | CCDG | 6 cut(s) | 122, 137, 144, 171, 213, 269 |
| MaeI | CTAG | 2 cut(s) | 149, 302 |
| MaeIII | GTNAC | 1 cut(s) | 81 |
| MboII | GAAGA | 2 cut(s) | 46, 175 |
| MlsI | TGGCCA | 1 cut(s) | 262 |
| MluCI | AATT | 1 cut(s) | 40 |
| MluNI | TGGCCA | 1 cut(s) | 262 |
| MnlI | CCTC | 2 cut(s) | 62, 287 |
| Mox20I | TGGCCA | 1 cut(s) | 262 |
| MscI | TGGCCA | 1 cut(s) | 262 |
| MseI | TTAA | 2 cut(s) | 38, 204 |
| Msp20I | TGGCCA | 1 cut(s) | 262 |
| MspR9I | CCNGG | 1 cut(s) | 159 |
| MvaI | CCWGG | 1 cut(s) | 159 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 133 |
| NmuCI | GTSAC | 1 cut(s) | 81 |
| PaqCI | CACCTGC | 1 cut(s) | 274 |
| PsiI | TTATAA | 1 cut(s) | 108 |
| Psp6I | CCWGG | 1 cut(s) | 157 |
| PspFI | CCCAGC | 1 cut(s) | 123 |
| PspGI | CCWGG | 1 cut(s) | 157 |
| SaqAI | TTAA | 2 cut(s) | 38, 204 |
| ScrFI | CCNGG | 1 cut(s) | 159 |
| SetI | ASST | 3 cut(s) | 74, 288, 298 |
| Sse9I | AATT | 1 cut(s) | 40 |
| SspMI | CTAG | 2 cut(s) | 149, 302 |
| StyD4I | CCNGG | 1 cut(s) | 157 |
| StyI | CCWWGG | 2 cut(s) | 241, 296 |
| TaqI | TCGA | 1 cut(s) | 171 |
| TasI | AATT | 1 cut(s) | 40 |
| Tru1I | TTAA | 2 cut(s) | 38, 204 |
| Tru9I | TTAA | 2 cut(s) | 38, 204 |
| TseFI | GTSAC | 1 cut(s) | 81 |
| Tsp45I | GTSAC | 1 cut(s) | 81 |
| TspDTI | ATGAA | 1 cut(s) | 33 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 281 |
| XapI | RAATTY | 1 cut(s) | 40 |
| XspI | CTAG | 2 cut(s) | 149, 302 |