Rh1BG116000
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0032458
Physical Location & Seq
Forward (+)
19775356 .. 19775784
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG116000.1

Sequence Viewer

Length: 429 bp
ATGGAGCAAGAAGAGTTGCTTGAGCCACAAGCGAAGCGGCAACGAACGGTGCCATCCATTGGTAATGCACCACTAACAATGCCATCAGAAGATGATGCTGCATTCGCAGCTGAACTAGAAGAGTCATTGGAATGCTTTAAAGATGATAATGCACCCTCAGAAGCTCGAGCAATTGGCTTTCAAGGTGGGGAGAATGGTGGACTCCAACAATTAGCAGCCGAGGTGCAATCAGGCCCTTCATTTGTAGACGATCATGGAATATTTAATCCGCTGCCGGAGGAAGACTTTCTCTTGGCGGAAATGTTAGAAGAAATGGGTATGTTTGAAGAAATGGGTATGGTGGACATGGAAGAACTAGTTATGAATGGAAGCATCTTCAGCCAGCCAGATTTAAGCATGGATATCTCTTTGGAGTTGGTTAATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

142

Amino Acids

15.56

Weight (kDa)

4.05

Isoelectric Point (pI)

60.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0032458)

Species Orthologous Gene IDs
rosa_rugosa Rorug07G0158000
rosa_samantha Rh1BG116000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 49
AccB7I CCANNNNNTGG 1 cut(s) 59
AccI GTMKAC 1 cut(s) 246
AciI CCGC 3 cut(s) 37, 269, 296
AcuI CTGAAG 1 cut(s) 361
AfiI CCNNNNNNNGG 1 cut(s) 59
AgsI TTSAA 2 cut(s) 182, 326
AhlI ACTAGT 1 cut(s) 355
AluBI AGCT 2 cut(s) 110, 164
AluI AGCT 2 cut(s) 110, 164
Ama87I CYCGRG 1 cut(s) 165
AoxI GGCC 1 cut(s) 232
ApeKI GCWGC 4 cut(s) 98, 107, 215, 271
Asp700I GAANNNNTTC 1 cut(s) 285
AspS9I GGNCC 1 cut(s) 233
AvaI CYCGRG 1 cut(s) 165
BanI GGYRCC 1 cut(s) 49
BbsI GAAGAC 1 cut(s) 288
BbvI GCAGC 4 cut(s) 85, 119, 227, 258
BccI CCATC 2 cut(s) 61, 91
BcuI ACTAGT 1 cut(s) 355
BfaI CTAG 2 cut(s) 116, 356
BisI GCNGC 5 cut(s) 38, 99, 108, 216, 272
BlsI GCNGC 5 cut(s) 39, 100, 109, 217, 273
BmeT110I CYCGRG 1 cut(s) 165
BmgT120I GGNCC 1 cut(s) 233
BmiI GGNNCC 1 cut(s) 51
BmsI GCATC 2 cut(s) 85, 381
BpiI GAAGAC 1 cut(s) 288
BpuEI CTTGAG 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 219
Bsc4I CCNNNNNNNGG 1 cut(s) 59
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 1 cut(s) 53
BseLI CCNNNNNNNGG 1 cut(s) 59
BseMII CTCAG 1 cut(s) 171
BseXI GCAGC 4 cut(s) 85, 119, 227, 258
BshFI GGCC 1 cut(s) 234
BshNI GGYRCC 1 cut(s) 49
BsiHKCI CYCGRG 1 cut(s) 165
BsiSI CCGG 1 cut(s) 275
BslI CCNNNNNNNGG 1 cut(s) 59
BsmI GAATGC 2 cut(s) 101, 137
BsnI GGCC 1 cut(s) 234
BsoBI CYCGRG 1 cut(s) 165
Bsp143I GATC 1 cut(s) 250
BspACI CCGC 3 cut(s) 37, 269, 296
BspANI GGCC 1 cut(s) 234
BspCNI CTCAG 1 cut(s) 170
BspLI GGNNCC 1 cut(s) 51
BspT107I GGYRCC 1 cut(s) 49
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 1 cut(s) 250
Bst4CI ACNGT 1 cut(s) 49
Bst6I CTCTTC 2 cut(s) 6, 114
BstC8I GCNNGC 1 cut(s) 383
BstDEI CTNAG 1 cut(s) 157
BstF5I GGATG 1 cut(s) 53
BstKTI GATC 1 cut(s) 253
BstMBI GATC 1 cut(s) 250
BstMWI GCNNNNNNNGC 3 cut(s) 104, 107, 378
BstV1I GCAGC 4 cut(s) 85, 119, 227, 258
BstV2I GAAGAC 1 cut(s) 288
BsuRI GGCC 1 cut(s) 234
BtsCI GGATG 1 cut(s) 53
Cac8I GCNNGC 1 cut(s) 383
Cfr13I GGNCC 1 cut(s) 233
CviAII CATG 3 cut(s) 254, 346, 397
CviJI RGCY 8 cut(s) 25, 110, 164, 177, 218, 234, 381, 385
CviKI_1 RGCY 8 cut(s) 25, 110, 164, 177, 218, 234, 381, 385
DdeI CTNAG 1 cut(s) 157
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
DraI TTTAAA 1 cut(s) 139
Eam1104I CTCTTC 2 cut(s) 6, 114
EarI CTCTTC 2 cut(s) 6, 114
EciI GGCGGA 1 cut(s) 311
Eco32I GATATC 1 cut(s) 403
Eco57I CTGAAG 1 cut(s) 361
Eco88I CYCGRG 1 cut(s) 165
EcoO109I RGGNCCY 1 cut(s) 233
EcoRV GATATC 1 cut(s) 403
FaeI CATG 3 cut(s) 257, 349, 400
FaiI YATR 6 cut(s) 255, 320, 338, 347, 362, 398
FalI AAGNNNNNCTT 1 cut(s) 35
FatI CATG 3 cut(s) 253, 345, 396
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 5 cut(s) 38, 99, 108, 216, 272
FokI GGATG 1 cut(s) 40
Fsp4HI GCNGC 5 cut(s) 38, 99, 108, 216, 272
FspBI CTAG 2 cut(s) 116, 356
GluI GCNGC 5 cut(s) 38, 99, 108, 216, 272
HaeIII GGCC 1 cut(s) 234
HapII CCGG 1 cut(s) 275
Hin1II CATG 3 cut(s) 257, 349, 400
HinfI GANTC 2 cut(s) 122, 201
HpaII CCGG 1 cut(s) 275
Hpy166II GTNNAC 3 cut(s) 200, 247, 343
Hpy188I TCNGA 2 cut(s) 88, 160
Hpy8I GTNNAC 3 cut(s) 200, 247, 343
HpyAV CCTTC 1 cut(s) 246
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4V TGCA 4 cut(s) 68, 101, 152, 226
HpyF10VI GCNNNNNNNGC 3 cut(s) 104, 107, 378
HpyF3I CTNAG 1 cut(s) 157
Hsp92II CATG 3 cut(s) 257, 349, 400
Kzo9I GATC 1 cut(s) 250
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 4 cut(s) 216, 288, 395, 399
Lsp1109I GCAGC 4 cut(s) 85, 119, 227, 258
LweI GCATC 2 cut(s) 85, 381
MaeI CTAG 2 cut(s) 116, 356
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MboII GAAGA 8 cut(s) 23, 101, 131, 293, 320, 338, 362, 367
MfeI CAATTG 1 cut(s) 171
MluCI AATT 2 cut(s) 171, 209
MlyI GAGTC 2 cut(s) 131, 195
MmeI TCCRAC 1 cut(s) 229
MnlI CCTC 3 cut(s) 166, 214, 271
MroXI GAANNNNTTC 1 cut(s) 285
MseI TTAA 4 cut(s) 138, 264, 392, 420
MslI CAYNNNNRTG 1 cut(s) 130
MspA1I CMGCKG 2 cut(s) 110, 271
MspI CCGG 1 cut(s) 275
MunI CAATTG 1 cut(s) 171
Mva1269I GAATGC 2 cut(s) 101, 137
MwoI GCNNNNNNNGC 3 cut(s) 104, 107, 378
NdeII GATC 1 cut(s) 250
NlaIII CATG 3 cut(s) 257, 349, 400
NlaIV GGNNCC 1 cut(s) 51
NmeAIII GCCGAG 1 cut(s) 244
PaeR7I CTCGAG 1 cut(s) 165
PctI GAATGC 2 cut(s) 101, 137
PdmI GAANNNNTTC 1 cut(s) 285
PflMI CCANNNNNTGG 1 cut(s) 59
PkrI GCNGC 5 cut(s) 39, 100, 109, 217, 273
PleI GAGTC 2 cut(s) 130, 195
PpsI GAGTC 2 cut(s) 130, 195
PspN4I GGNNCC 1 cut(s) 51
PspPI GGNCC 1 cut(s) 233
PspXI VCTCGAGB 1 cut(s) 165
PvuII CAGCTG 1 cut(s) 110
RseI CAYNNNNRTG 1 cut(s) 130
SaqAI TTAA 4 cut(s) 138, 264, 392, 420
SatI GCNGC 5 cut(s) 38, 99, 108, 216, 272
Sau3AI GATC 1 cut(s) 250
Sau96I GGNCC 1 cut(s) 233
SchI GAGTC 2 cut(s) 131, 195
SetI ASST 4 cut(s) 112, 166, 187, 225
SfaNI GCATC 2 cut(s) 85, 381
Sfr274I CTCGAG 1 cut(s) 165
SlaI CTCGAG 1 cut(s) 165
SmiMI CAYNNNNRTG 1 cut(s) 130
SmlI CTYRAG 2 cut(s) 20, 165
SmoI CTYRAG 2 cut(s) 20, 165
SpeI ACTAGT 1 cut(s) 355
Sse9I AATT 2 cut(s) 171, 209
SsiI CCGC 3 cut(s) 37, 269, 296
SspI AATATT 1 cut(s) 261
SspMI CTAG 2 cut(s) 116, 356
TaaI ACNGT 1 cut(s) 49
TaqI TCGA 1 cut(s) 166
TasI AATT 2 cut(s) 171, 209
TauI GCSGC 1 cut(s) 40
Tru1I TTAA 4 cut(s) 138, 264, 392, 420
Tru9I TTAA 4 cut(s) 138, 264, 392, 420
TseI GCWGC 4 cut(s) 98, 107, 215, 271
TspDTI ATGAA 2 cut(s) 228, 377
Van91I CCANNNNNTGG 1 cut(s) 59
XhoI CTCGAG 1 cut(s) 165
XmiI GTMKAC 1 cut(s) 246
XmnI GAANNNNTTC 1 cut(s) 285
XspI CTAG 2 cut(s) 116, 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.