Rh1BG212800

Mitogen-activated protein kinase kinase kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Reverse (-)
33171830 .. 33173790
1961 bp
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UTR
Exon/CDS
Intron
Rh1BG212800.1

Sequence Viewer

Length: 237 bp
ATGTTCAGATCTTCCCTTCCAAAACTCTTAGAACTCCCATCACCTCAGATCGACTTCGGCTTGGACTTCCGTATTATAGAAAGTGTCGGTGGCCGTGTGTGCAAGGCAATACTTGATTCTGGAAGAATTATTGCTGTTAAAAAGATTCAAATTCCAGAAGATGGTTCAAATGAGAACCAGGGGGAGTTGTCTGGCAGCAAATCCTCTGTCCCTTATTTTCCTGTCCCATCCCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

78

Amino Acids

8.47

Weight (kDa)

6.16

Isoelectric Point (pI)

59.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0034027)

Species Orthologous Gene IDs
rosa_samantha Rh1BG212800 Rh1DG239000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 161
AcoI YGGCCR 1 cut(s) 91
AcsI RAATTY 1 cut(s) 150
AfiI CCNNNNNNNGG 1 cut(s) 161
AgsI TTSAA 2 cut(s) 149, 168
AjnI CCWGG 1 cut(s) 177
AoxI GGCC 1 cut(s) 91
ApeKI GCWGC 1 cut(s) 195
ApoI RAATTY 1 cut(s) 150
ArsI GACNNNNNNTTYG 2 cut(s) 192, 224
AsuHPI GGTGA 1 cut(s) 33
BbvI GCAGC 1 cut(s) 207
BccI CCATC 3 cut(s) 46, 155, 235
BceAI ACGGC 1 cut(s) 78
BciT130I CCWGG 1 cut(s) 179
BglII AGATCT 1 cut(s) 8
BisI GCNGC 1 cut(s) 196
BlsI GCNGC 1 cut(s) 197
Bme1390I CCNGG 1 cut(s) 179
BmrFI CCNGG 1 cut(s) 179
BsaJI CCNNGG 1 cut(s) 178
Bsc4I CCNNNNNNNGG 1 cut(s) 161
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 1 cut(s) 178
BseGI GGATG 1 cut(s) 227
BseLI CCNNNNNNNGG 1 cut(s) 161
BseMII CTCAG 1 cut(s) 59
BseXI GCAGC 1 cut(s) 207
BshFI GGCC 1 cut(s) 93
BslFI GGGAC 2 cut(s) 194, 209
BslI CCNNNNNNNGG 1 cut(s) 161
BsmFI GGGAC 2 cut(s) 194, 209
BsnI GGCC 1 cut(s) 93
Bsp143I GATC 2 cut(s) 8, 48
BspANI GGCC 1 cut(s) 93
BspCNI CTCAG 1 cut(s) 58
BssECI CCNNGG 1 cut(s) 178
BssMI GATC 2 cut(s) 8, 48
Bst2UI CCWGG 1 cut(s) 179
BstDEI CTNAG 2 cut(s) 28, 45
BstF5I GGATG 1 cut(s) 227
BstKTI GATC 2 cut(s) 11, 51
BstMBI GATC 2 cut(s) 8, 48
BstMWI GCNNNNNNNGC 1 cut(s) 99
BstNI CCWGG 1 cut(s) 179
BstSCI CCNGG 1 cut(s) 177
BstV1I GCAGC 1 cut(s) 207
BstX2I RGATCY 1 cut(s) 8
BstYI RGATCY 1 cut(s) 8
BsuRI GGCC 1 cut(s) 93
BtsCI GGATG 1 cut(s) 227
CviJI RGCY 2 cut(s) 60, 93
CviKI_1 RGCY 2 cut(s) 60, 93
DdeI CTNAG 2 cut(s) 28, 45
DpnI GATC 2 cut(s) 10, 50
DpnII GATC 2 cut(s) 8, 48
EaeI YGGCCR 1 cut(s) 91
EcoRII CCWGG 1 cut(s) 177
FaiI YATR 1 cut(s) 77
FaqI GGGAC 2 cut(s) 194, 209
Fnu4HI GCNGC 1 cut(s) 196
FokI GGATG 1 cut(s) 214
Fsp4HI GCNGC 1 cut(s) 196
GluI GCNGC 1 cut(s) 196
HaeIII GGCC 1 cut(s) 93
HinfI GANTC 2 cut(s) 116, 145
HphI GGTGA 1 cut(s) 33
Hpy188I TCNGA 2 cut(s) 8, 48
Hpy188III TCNNGA 2 cut(s) 120, 155
HpyAV CCTTC 1 cut(s) 26
HpyCH4V TGCA 1 cut(s) 102
HpyF10VI GCNNNNNNNGC 1 cut(s) 99
HpyF3I CTNAG 2 cut(s) 28, 45
Kzo9I GATC 2 cut(s) 8, 48
LpnPI CCDG 5 cut(s) 105, 164, 168, 177, 191
Lsp1109I GCAGC 1 cut(s) 207
MalI GATC 2 cut(s) 10, 50
MboI GATC 2 cut(s) 8, 48
MboII GAAGA 3 cut(s) 3, 135, 170
MflI RGATCY 1 cut(s) 8
MluCI AATT 2 cut(s) 126, 150
MnlI CCTC 2 cut(s) 54, 214
MseI TTAA 1 cut(s) 138
MslI CAYNNNNRTG 1 cut(s) 232
MspR9I CCNGG 1 cut(s) 179
MvaI CCWGG 1 cut(s) 179
MwoI GCNNNNNNNGC 1 cut(s) 99
NdeII GATC 2 cut(s) 8, 48
PfeI GAWTC 2 cut(s) 116, 145
PflMI CCANNNNNTGG 1 cut(s) 161
PkrI GCNGC 1 cut(s) 197
Psp6I CCWGG 1 cut(s) 177
PspGI CCWGG 1 cut(s) 177
PsuI RGATCY 1 cut(s) 8
RseI CAYNNNNRTG 1 cut(s) 232
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 1 cut(s) 196
Sau3AI GATC 2 cut(s) 8, 48
ScrFI CCNGG 1 cut(s) 179
SetI ASST 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 232
Sse9I AATT 2 cut(s) 126, 150
StyD4I CCNGG 1 cut(s) 177
TaqI TCGA 1 cut(s) 51
TasI AATT 2 cut(s) 126, 150
TfiI GAWTC 2 cut(s) 116, 145
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TseI GCWGC 1 cut(s) 195
TspGWI ACGGA 1 cut(s) 59
Van91I CCANNNNNTGG 1 cut(s) 161
XapI RAATTY 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.