Rh1CG044600

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0031249
Physical Location & Seq
Forward (+)
8474217 .. 8474537
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG044600.1

Sequence Viewer

Length: 216 bp
ATGCTTGAGGTGACGCGTGGGTTTCATGAGCTGCCAAGGGAGGTGAAGGCTGAGTACTATACTAGGGATCCCAAGAGGAAGGTCAAATACTTTAGTAGCTTTAATTTGTACGAGTCAAAGTTTGCTGCTTGGAGGGACAGCTTGTTTTGTGACATGGCTCCGGAGCCCTTGGATCCCCAAGAATTGCCTCTGGGATATAACTATGGAGTATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

71

Amino Acids

8.49

Weight (kDa)

5.75

Isoelectric Point (pI)

37.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0031249)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003199.1_g000001
rosa_samantha Rh1CG044600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 16
AccIII TCCGGA 1 cut(s) 160
AclWI GGATC 4 cut(s) 62, 75, 167, 180
AfaI GTAC 2 cut(s) 56, 110
AflIII ACRYGT 1 cut(s) 14
AluBI AGCT 3 cut(s) 31, 99, 141
AluI AGCT 3 cut(s) 31, 99, 141
AlwI GGATC 4 cut(s) 62, 75, 167, 180
Aor13HI TCCGGA 1 cut(s) 160
ApeKI GCWGC 2 cut(s) 31, 125
AsuHPI GGTGA 2 cut(s) 22, 55
BamHI GGATCC 2 cut(s) 67, 172
BanII GRGCYC 1 cut(s) 168
BarI GAAGNNNNNNTAC 4 cut(s) 38, 70, 71, 103
BbvI GCAGC 2 cut(s) 18, 112
BfaI CTAG 1 cut(s) 63
BisI GCNGC 2 cut(s) 32, 126
BlsI GCNGC 2 cut(s) 33, 127
BmcAI AGTACT 1 cut(s) 56
BmiI GGNNCC 4 cut(s) 69, 159, 165, 174
BpuEI CTTGAG 1 cut(s) 26
BsaJI CCNNGG 2 cut(s) 35, 168
BsaWI WCCGGW 1 cut(s) 160
BseAI TCCGGA 1 cut(s) 160
BseDI CCNNGG 2 cut(s) 35, 168
BseMII CTCAG 1 cut(s) 42
BseXI GCAGC 2 cut(s) 18, 112
Bsh1236I CGCG 1 cut(s) 16
BsiSI CCGG 1 cut(s) 161
BslFI GGGAC 1 cut(s) 149
BsmFI GGGAC 1 cut(s) 149
Bsp1286I GDGCHC 1 cut(s) 168
Bsp13I TCCGGA 1 cut(s) 160
Bsp143I GATC 2 cut(s) 67, 172
BspCNI CTCAG 1 cut(s) 43
BspEI TCCGGA 1 cut(s) 160
BspFNI CGCG 1 cut(s) 16
BspHI TCATGA 1 cut(s) 25
BspLI GGNNCC 4 cut(s) 69, 159, 165, 174
BspPI GGATC 4 cut(s) 62, 75, 167, 180
BssECI CCNNGG 2 cut(s) 35, 168
BssMI GATC 2 cut(s) 67, 172
BssT1I CCWWGG 2 cut(s) 35, 168
BstDEI CTNAG 1 cut(s) 51
BstFNI CGCG 1 cut(s) 16
BstKTI GATC 2 cut(s) 70, 175
BstMBI GATC 2 cut(s) 67, 172
BstUI CGCG 1 cut(s) 16
BstV1I GCAGC 2 cut(s) 18, 112
BstX2I RGATCY 2 cut(s) 67, 172
BstYI RGATCY 2 cut(s) 67, 172
CciI TCATGA 1 cut(s) 25
CseI GACGC 1 cut(s) 22
Csp6I GTAC 2 cut(s) 55, 109
CviAII CATG 2 cut(s) 26, 154
CviJI RGCY 6 cut(s) 31, 50, 99, 141, 158, 166
CviKI_1 RGCY 6 cut(s) 31, 50, 99, 141, 158, 166
CviQI GTAC 2 cut(s) 55, 109
DdeI CTNAG 1 cut(s) 51
DpnI GATC 2 cut(s) 69, 174
DpnII GATC 2 cut(s) 67, 172
Eco130I CCWWGG 2 cut(s) 35, 168
Eco24I GRGCYC 1 cut(s) 168
EcoT14I CCWWGG 2 cut(s) 35, 168
EcoT38I GRGCYC 1 cut(s) 168
ErhI CCWWGG 2 cut(s) 35, 168
FaeI CATG 2 cut(s) 29, 157
FaiI YATR 5 cut(s) 27, 60, 155, 198, 204
FaqI GGGAC 1 cut(s) 149
FatI CATG 2 cut(s) 25, 153
Fnu4HI GCNGC 2 cut(s) 32, 126
FriOI GRGCYC 1 cut(s) 168
Fsp4HI GCNGC 2 cut(s) 32, 126
FspBI CTAG 1 cut(s) 63
GluI GCNGC 2 cut(s) 32, 126
HapII CCGG 1 cut(s) 161
HgaI GACGC 1 cut(s) 22
Hin1II CATG 2 cut(s) 29, 157
HinfI GANTC 1 cut(s) 113
HpaII CCGG 1 cut(s) 161
HphI GGTGA 2 cut(s) 22, 55
Hpy188III TCNNGA 2 cut(s) 26, 161
HpyAV CCTTC 2 cut(s) 40, 73
HpyF3I CTNAG 1 cut(s) 51
Hsp92II CATG 2 cut(s) 29, 157
Kpn2I TCCGGA 1 cut(s) 160
Kzo9I GATC 2 cut(s) 67, 172
LmnI GCTCC 2 cut(s) 163, 163
LpnPI CCDG 2 cut(s) 174, 176
Lsp1109I GCAGC 2 cut(s) 18, 112
MaeI CTAG 1 cut(s) 63
MaeIII GTNAC 2 cut(s) 10, 149
MalI GATC 2 cut(s) 69, 174
MboI GATC 2 cut(s) 67, 172
MflI RGATCY 2 cut(s) 67, 172
MhlI GDGCHC 1 cut(s) 168
MluCI AATT 2 cut(s) 103, 182
MluI ACGCGT 1 cut(s) 14
MlyI GAGTC 1 cut(s) 122
MnlI CCTC 4 cut(s) 34, 69, 126, 198
MroI TCCGGA 1 cut(s) 160
MseI TTAA 1 cut(s) 102
MspI CCGG 1 cut(s) 161
MvnI CGCG 1 cut(s) 16
NdeII GATC 2 cut(s) 67, 172
NlaIII CATG 2 cut(s) 29, 157
NlaIV GGNNCC 4 cut(s) 69, 159, 165, 174
NmuCI GTSAC 2 cut(s) 10, 149
PagI TCATGA 1 cut(s) 25
PkrI GCNGC 2 cut(s) 33, 127
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
PspN4I GGNNCC 4 cut(s) 69, 159, 165, 174
PsuI RGATCY 2 cut(s) 67, 172
RsaI GTAC 2 cut(s) 56, 110
RsaNI GTAC 2 cut(s) 55, 109
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 2 cut(s) 32, 126
Sau3AI GATC 2 cut(s) 67, 172
ScaI AGTACT 1 cut(s) 56
SchI GAGTC 1 cut(s) 122
SduI GDGCHC 1 cut(s) 168
SetI ASST 6 cut(s) 12, 33, 45, 84, 101, 143
SmlI CTYRAG 1 cut(s) 5
SmoI CTYRAG 1 cut(s) 5
Sse9I AATT 2 cut(s) 103, 182
SspMI CTAG 1 cut(s) 63
StyI CCWWGG 2 cut(s) 35, 168
TasI AATT 2 cut(s) 103, 182
TatI WGTACW 1 cut(s) 54
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TseFI GTSAC 2 cut(s) 10, 149
TseI GCWGC 2 cut(s) 31, 125
Tsp45I GTSAC 2 cut(s) 10, 149
TspDTI ATGAA 1 cut(s) 14
XspI CTAG 1 cut(s) 63
ZrmI AGTACT 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.